def test_relion_std_no_plot():
plot = False
typ = 'relion'
name = 'data_test.star'
index = None
params = None
tol_psi = 30
tol_theta = 15
tol_filament = 0.2
window_size = 3
plot_lim = 4
method = 'std'
tol_std = 1
mhf.calculate_priors(tracker=name,
params_file=params,
index_file=index,
typ=typ,
tol_psi=tol_psi,
tol_theta=tol_theta,
tol_filament=tol_filament,
tol_std=tol_std,
plot=plot,
plot_lim=plot_lim,
method=method,
window_size=window_size)
def test_relion_plot_std_fit():
plot = True
typ = 'relion'
name = 'data_test.star'
index = None
params = None
tol_psi = 30
tol_theta = 15
tol_filament = 0.2
tol_std = 1
tol_mean = 30
window_size = 3
plot_lim = 4
method = 'std'
prior_method = 'fit'
node = 0
mhf.calculate_priors(plot=plot,
typ=typ,
tracker=name,
index_file=index,
params_file=params,
tol_psi=tol_psi,
tol_theta=tol_theta,
tol_filament=tol_filament,
tol_std=tol_std,
tol_mean=tol_mean,
window_size=window_size,
plot_lim=plot_lim,
outlier_method=method,
prior_method=prior_method,
node=node)
def test_sphire_plot_std_linear():
plot = True
typ = 'sphire'
name = 'bdb:stack'
index = 'index.txt'
params = 'params.txt'
tol_psi = 30
tol_theta = 15
tol_filament = 0.2
tol_std = 1
tol_mean = 30
window_size = 3
plot_lim = 4
method = 'std'
prior_method = 'linear'
node = 0
shutil.copy2('index_raw.txt', 'index.txt')
shutil.copy2('params_raw.txt', 'params.txt')
mhf.calculate_priors(plot=plot,
typ=typ,
tracker=name,
index_file=index,
params_file=params,
tol_psi=tol_psi,
tol_theta=tol_theta,
tol_filament=tol_filament,
tol_std=tol_std,
tol_mean=tol_mean,
window_size=window_size,
plot_lim=plot_lim,
outlier_method=method,
prior_method=prior_method,
node=node)
