sys.version_info.minor)
sys.path = [local] + sys.path
# %%
# %%capture
# load all python and interactive tools
# %matplotlib widget
# %xmode Plain
# Plain or Minimal.
import spike
# %%
if os.uname(
).nodename == 'madMacBook': # a switch for the development environment
from spike.Interactive import INTER
INTER.hidecode(initial='hide', message=False)
# %%
import EUFT_Spike.Tools.FTICR_INTER as FI
from EUFT_Spike.Tools import DocEUFT
DocEUFT.Howto_display('1D')
# %%
# launch
#display(Markdown('## ... program is Ready'))
#I.hidecode(initial='show', message=False)
from importlib import reload
reload(FI)
w = FI.IFTMS()
# %% [markdown]
display(Markdown('## STARTING Environment...'))
import matplotlib as mpl
# %matplotlib widget
import spike
from spike.File import BrukerMS
from spike.Interactive import INTER as I
from spike.Interactive import FTICR_INTER as FI
from spike.Interactive import INTER_MS as IMS
from spike.Interactive.ipyfilechooser import FileChooser
print("\nInteractive module version,", I.__version__)
from datetime import datetime
print('Run date:', datetime.now().isoformat())
I.initialize()
display(Markdown('## ...program is Ready'))
from importlib import reload # this line is debugging help
# configurable items
mpl.rcParams['figure.figsize'] = (8, 4) # (X,Y) default figure size
I.Activate_Wheel = True # True/False wheel control in the graphic cells
# %% [markdown]
# ### Choose the file
# Use `FileChooser()` to choose a file on your disk - The optional `base` argument, starts the exploration on a given location.
#
# Bruker files are named `fid` and are contained in a `*.d` directory.
# %%
FC = FileChooser(filetype='fid')
# %% [markdown]
# ## To use it,
# execute each executable cell (marked with the `In[]`) either by cliking on the Run icon on the top of the window, or by hitting *shift-Return* on the keyboard
# %% [markdown]
# ### Initialization of the environment
# the following cell should be run only once, at the beginning of the processing
# %%
from IPython.display import display, HTML, Markdown, Image
display(Markdown('## STARTING Environment...'))
# %matplotlib notebook
import spike.Interactive.INTER as I
from spike.Interactive.FTICR_INTER import MR, MR_interact
from spike.Interactive.ipyfilechooser import FileChooser
I.hidecode()
# %% [markdown]
# ### Choose the file
# Use `FileChooser()` to choose a file on your disk - The optional `base` argument, starts the exploration on a given location.
#
# 2D processed files are `*.msh5` files.
# %%
FC = FileChooser('/DATA',filetype='y*.msh5', mode='r')
display(FC)
# %% [markdown]
# the `MR` tool simply loads and describe the content of the file
# %%
# load all python and interactive tools
from __future__ import print_function, division
from IPython.display import display, HTML, Markdown, Image
display(Markdown('## STARTING Environment...'))
import matplotlib.pyplot as plt
# %matplotlib widget
import os.path as op
import spike
from spike.File.BrukerNMR import Import_2D
from spike.Interactive import INTER as I
from spike.Interactive import INTER_2D as I2D
from spike.Interactive.ipyfilechooser import FileChooser
print("\nInteractive module version,", I.__version__)
from datetime import datetime
print('Run date:', datetime.now().isoformat())
I.initialize()
display(Markdown('## ...program is Ready'))
from importlib import reload # the two following lines are debugging help
# configurable items
plt.rcParams['figure.figsize'] = (8, 4) # (X,Y) default figure size
I.Activate_Wheel = True # True/False wheel control in the graphic cells
# %% [markdown]
# ---
#
# ### Choose the file
# The `FileChooser()` tool creates a dialog box which allows to choose a file on your disk
#
# - use the `Select` button
# - modify the ( *optional* ) `path` argument, to start the exploration on a given location
#
# ## Initialization
# the following cell is to be run once, at the beginning of the processing
# %%
# load all python and interactive tools - has to be run only once (but it does not hurt to rerun...)
from IPython.display import display, HTML, Markdown, Image
display(Markdown('## STARTING Environment...'))
import matplotlib as mpl
# %matplotlib widget
import spike
from spike.File.BrukerNMR import Import_1D
from spike.Interactive import INTER as I
from spike.Interactive.ipyfilechooser import FileChooser
from datetime import datetime
I.initialize()
print('Run date:', datetime.now().isoformat())
display(Markdown('## ...program is Ready'))
from importlib import reload # this line is debugging help
# configurable items - you may change them to fit you preferences
verbose = 1 # chose from 0 (terse) to 3 more verbose
mpl.rcParams['figure.figsize'] = (8, 4) # (X,Y) default figure size
I.Activate_Wheel = True # True/False scale with wheel control in the graphic cells
# %% [markdown]
# ### Choose the file
# The `FileChooser()` tool creates a dialog box which allows to choose a file on your disk
#
# - use the `Select` button, click on the directory to move around `..` is for going back in the directory tree
# - click on the file to select it
# %%
# load all python and interactive tools
from __future__ import print_function, division
from IPython.display import display, HTML, Markdown, Image
display(Markdown('## STARTING Environment...'))
# %matplotlib widget
import os.path as op
import spike
from spike.File.BrukerNMR import Import_1D
from spike.Interactive import INTER as I
from spike.Interactive.ipyfilechooser import FileChooser
display(Markdown('## ...program is Ready'))
from importlib import reload # the two following lines are debugging help
reload(I) # and can be removed safely when in production
I.hidecode()
# %% [markdown]
# ### Choose the file
# The `FileChooser()` tool creates a dialog box which allows to choose a file on your disk
#
# - use the `Select` button
# - modify the ( *optional* ) `path` argument, to start the exploration on a given location
# - After the selection, the selected filename is found in `FC.selected`
# %%
FC = FileChooser(path='/DATA/', filename='fid')
display(FC)
# %% [markdown]
# ### Import dataset