def update_spotfinder(self):
# used by distl.image_viewer
S = spotfinder_factory(self.rundir,self.Files,self.phil_params)
self.S = S
for frame in self.frames:
if self.verbose:
pretty_image_stats(S,frame)
notes(S,self.frames[0])
def printSpots(self):
'''spotfinder and pickle implicitly assumes ADSC format'''
if self.phil_params.distl.dxtbx:
self.S = S = dxtbx_spotfinder_factory(self.phil_params)
else:
self.S = S = spotfinder_factory(self.rundir,self.Files,self.phil_params)
for frame in self.frames:
if self.verbose:
pretty_image_stats(S,frame)
notes(S,self.frames[0])
def get_spotfinder(self, distl_params
): #following heuristics_base.register_frames() example
#application-specific adjustments to parameters
#XXX this should probably be a deep copy of parameters.
if distl_params.distl.res.inner != None:
distl_params.distl_lowres_limit = distl_params.distl.res.inner
if distl_params.distl.res.outer != None:
distl_params.force_method2_resolution_limit = distl_params.distl.res.outer
distl_params.distl_highres_limit = distl_params.distl.res.outer
distl_params.distl_force_binning = False
distl_params.distl_permit_binning = False
distl_params.wedgelimit = 1
distl_params.spotfinder_header_tests = False
#unusual location for min spot area tests...
from iotbx.detectors.context.config_detector import beam_center_convention_from_image_object
beam_center_convention_from_image_object(self, distl_params)
# end special min spot area treatment
from spotfinder.applications.practical_heuristics import heuristics_base
from spotfinder.diffraction.imagefiles import file_names
class empty:
pass
E = empty()
E.argv = ["Empty", self.filename]
names = file_names(E)
this_frame = names.frames()[0]
process_dictionary = dict(
twotheta="%f" % self.twotheta,
ybeam="%f" % self.beamy,
xbeam="%f" % self.beamx,
distance="%f" % self.distance,
wavelength="%f" % self.wavelength,
template=[
item.template for item in names.FN if item.number == this_frame
][0],
)
Spotfinder = heuristics_base(process_dictionary, distl_params)
Spotfinder.images[this_frame] = Spotfinder.oneImage(
this_frame, Spotfinder.pd, self)
Spotfinder.determine_maxcell(this_frame, Spotfinder.pd)
Spotfinder.images[this_frame]['spotoutput']['relpath'] = self.filename
from spotfinder.applications.stats_distl import pretty_image_stats
pretty_image_stats(Spotfinder, this_frame)
return Spotfinder, this_frame
def get_spotfinder(self,distl_params): #following heuristics_base.register_frames() example
#application-specific adjustments to parameters
#XXX this should probably be a deep copy of parameters.
if distl_params.distl.res.inner!=None:
distl_params.distl_lowres_limit = distl_params.distl.res.inner
if distl_params.distl.res.outer!=None:
distl_params.force_method2_resolution_limit = distl_params.distl.res.outer
distl_params.distl_highres_limit = distl_params.distl.res.outer
distl_params.distl_force_binning = False
distl_params.distl_permit_binning = False
distl_params.wedgelimit = 1
distl_params.spotfinder_header_tests = False
#unusual location for min spot area tests...
from iotbx.detectors.context.config_detector import beam_center_convention_from_image_object
beam_center_convention_from_image_object(self,distl_params)
# end special min spot area treatment
from spotfinder.applications.practical_heuristics import heuristics_base
from spotfinder.diffraction.imagefiles import file_names
class empty:pass
E = empty()
E.argv = ["Empty",self.filename]
names = file_names(E)
this_frame = names.frames()[0]
process_dictionary = dict(twotheta = "%f"%self.twotheta,
ybeam = "%f"%self.beamy,
xbeam = "%f"%self.beamx,
distance = "%f"%self.distance,
wavelength = "%f"%self.wavelength,
template = [item.template for item in names.FN if item.number==this_frame][0],
)
Spotfinder = heuristics_base(process_dictionary,distl_params)
Spotfinder.images[this_frame] = Spotfinder.oneImage(this_frame,
Spotfinder.pd, self)
Spotfinder.determine_maxcell(this_frame,Spotfinder.pd)
Spotfinder.images[this_frame]['spotoutput']['relpath']=self.filename
from spotfinder.applications.stats_distl import pretty_image_stats
pretty_image_stats(Spotfinder,this_frame)
return Spotfinder,this_frame
