def onFail(self, step):
"""
Override Analysis.onFail() to include galaxy specific things
"""
#if self.dryRun:
self.printPaths(log=step.log) # For posterity
step.log.out('') # skip a lineline
self.runCmd('ls -l ' + step.dir, dryRun=False, log=step.log)
step.log.out('')
retVal = Analysis.onFail(self, step)
if retVal > 255: # This case has been returning 0 !!!
retVal = 55
if retVal == 0:
retVal = 1 # Must fail!
return retVal
def onFail(self, step):
"""
Override Analysis.onFail() to include galaxy specific things
"""
#if self.dryRun:
self.printPaths(log=step.log) # For posterity
step.log.out('') # skip a lineline
self.runCmd('ls -l ' + step.dir, dryRun=False, log=step.log)
step.log.out('')
retVal = Analysis.onFail(self,step)
if retVal > 255: # This case has been returning 0 !!!
retVal = 55
if retVal == 0:
retVal = 1 # Must fail!
return retVal
def onFail(self, step):
self.pipeline.stop()
Analysis.onFail(self, step)
raise Exception('just failing')
def onFail(self, step):
self.pipeline.stop()
Analysis.onFail(self, step)
raise Exception('just failing')
