class TestInsulinMassSpecAndModelDataReader(TestCase):
def test_loadnmeth_2703(self):
self.reader = InsulinMassSpecAndModelDataReader()
res, times, relevant_proteins_nmeth_2703 = self.reader.loadnmeth_2703()
self.assertTrue(res)
self.assertTrue(times)
self.assertTrue(relevant_proteins_nmeth_2703)
def test_load_model_data(self):
self.reader = InsulinMassSpecAndModelDataReader()
[t, y] = self.reader.load_model_data()
self.assertTrue(t)
self.assertTrue(y)
class TestInsulinMassSpecAndModelDataReader(TestCase): def test_loadnmeth_2703(self): self.reader = InsulinMassSpecAndModelDataReader() res,times,relevant_proteins_nmeth_2703 = self.reader.loadnmeth_2703() self.assertTrue(res) self.assertTrue(times) self.assertTrue(relevant_proteins_nmeth_2703) def test_load_model_data(self): self.reader = InsulinMassSpecAndModelDataReader() [t,y] = self.reader.load_model_data() self.assertTrue(t) self.assertTrue(y)
def plot_all_alpha():
dataset, t, _ = InsulinMassSpecAndModelDataReader().loadnmeth_2703()
x = []
for protein_name in dataset:
x.append(dataset[protein_name])
plt.plot(np.matrix(x).T, 'b', alpha=0.3, color='#6D8AC4')
plt.xlabel('Time [min]')
plt.ylabel('Log2 - FoldChange compared to t = 0 [min]')
plt.xticks([0, 1, 2, 3, 4], t)
plt.ylim([-1.5, 1.5])
# plt.legend([e for e in dataset])
plt.show()
def plot_relevant_proteins():
dataset, t, relevant_proteins = InsulinMassSpecAndModelDataReader(
).loadnmeth_2703()
x = []
for protein_name in relevant_proteins:
x.append(dataset[relevant_proteins[protein_name]])
fig = plt.figure()
ax = fig.add_subplot(111)
ax.set_color_cycle([
"#D24FA2", "#68C738", "#D768DA", "#ABB336", "#A275D5", "#E0A233",
"#7187D9", "#DD5425", "#4FB4D2", "#D9464D", "#57C97A", "#E03375",
"#51953F", "#AF75AB", "#61752C", "#C55E7F", "#34A08C", "#C1624D",
"#5C7BA7", "#AC6F28"
])
for xs in x:
xs[0] = 0
plt.plot(np.matrix(x).T)
plt.xlabel('Time [min]')
plt.ylabel('Log2 - FoldChange compared to t = 0 [min]')
plt.xticks([0, 1, 2, 3, 4], t)
plt.ylim([-.7, 1.2])
ax.legend([e for e in relevant_proteins]).draggable()
plt.show()
def test_loadnmeth_2703(self):
self.reader = InsulinMassSpecAndModelDataReader()
res, times, relevant_proteins_nmeth_2703 = self.reader.loadnmeth_2703()
self.assertTrue(res)
self.assertTrue(times)
self.assertTrue(relevant_proteins_nmeth_2703)
def test_load_model_data(self):
self.reader = InsulinMassSpecAndModelDataReader()
[t, y] = self.reader.load_model_data()
self.assertTrue(t)
self.assertTrue(y)
def test_loadnmeth_2703(self): self.reader = InsulinMassSpecAndModelDataReader() res,times,relevant_proteins_nmeth_2703 = self.reader.loadnmeth_2703() self.assertTrue(res) self.assertTrue(times) self.assertTrue(relevant_proteins_nmeth_2703)
def test_load_model_data(self): self.reader = InsulinMassSpecAndModelDataReader() [t,y] = self.reader.load_model_data() self.assertTrue(t) self.assertTrue(y)