def add_run_number_to_files(subject, run):
run_num = re.sub('\D', ',', run).split(',')[-1]
files = glob.glob(op.join(MEG_DIR, subject, '{}-epilepsy-*.fif'.format(subject))) + \
glob.glob(op.join(EEG_DIR, subject, '{}-epilepsy-*.fif'.format(subject)))
# glob.glob(op.join(MMVT_DIR, subject, 'meg', '{}-epilepsy-*.fif'.format(subject))) + \
# glob.glob(op.join(MMVT_DIR, subject, 'eeg', '{}-epilepsy-*.fif'.format(subject)))
for fname in files:
new_fname = fname.replace('-epilepsy-', '-epilepsy{}-'.format(run_num))
print('{} - > {}'.format(fname, new_fname))
utils.rename_files(fname, new_fname)
def fix_amplitude_fnames(subject, bands):
stcs_files = glob.glob(op.join(MMVT_DIR, subject, 'meg', '{}-epilepsy-*-zvals-?h.stc'.format(subject))) + \
glob.glob(op.join(MMVT_DIR, subject, 'eeg', '{}-epilepsy-*-zvals-?h.stc'.format(subject)))
for stc_fname in stcs_files:
stc_name = utils.namebase(
stc_fname)[len('{}-epilepsy-'.format(subject)):-len('-zvals-lh')]
if stc_name.endswith('amplitude'):
continue
if not any([stc_name.endswith(band) for band in bands]):
stc_name += '_amplitude'
stc_end = '-zvals-lh.stc' if stc_fname.endswith(
'-zvals-lh.stc') else '-zvals-rh.stc'
new_stc_fname = op.join(
utils.get_parent_fol(stc_fname),
'{}-epilepsy-{}{}'.format(subject, stc_name, stc_end))
print('{} -> {}'.format(stc_fname, new_stc_fname))
utils.rename_files(stc_fname, new_stc_fname)
def rename_and_convert_electrodes_file(subject, ras_xls_sheet_name=''):
subject_elec_fname_no_ras_pattern = op.join(SUBJECTS_DIR, subject, 'electrodes', '{subject}.{postfix}')
subject_elec_fname_pattern = op.join(SUBJECTS_DIR, subject, 'electrodes', '{subject}_RAS.{postfix}')
subject_elec_fname_csv = subject_elec_fname_pattern.format(subject=subject, postfix='csv')
subject_elec_fname_xlsx = subject_elec_fname_pattern.format(subject=subject, postfix='xlsx')
utils.rename_files([subject_elec_fname_no_ras_pattern.format(subject=subject, postfix='xlsx'),
subject_elec_fname_no_ras_pattern.format(subject=subject.upper(), postfix='xlsx'),
subject_elec_fname_no_ras_pattern.format(subject=subject, postfix='xls'),
subject_elec_fname_no_ras_pattern.format(subject=subject.upper(), postfix='xls')],
subject_elec_fname_pattern.format(subject=subject, postfix='xlsx'))
utils.rename_files([subject_elec_fname_pattern.format(subject=subject.upper(), postfix='csv')],
subject_elec_fname_csv)
utils.rename_files([subject_elec_fname_pattern.format(subject=subject.upper(), postfix='xlsx')],
subject_elec_fname_xlsx)
if op.isfile(subject_elec_fname_xlsx) and \
(not op.isfile(subject_elec_fname_csv) or op.getsize(subject_elec_fname_csv) == 0):
utils.csv_from_excel(subject_elec_fname_xlsx, subject_elec_fname_csv, ras_xls_sheet_name)