def test_species_no_maps(self):
parser = cli.stdpopsim_cli_parser()
cmd = "download-genetic-maps some_species"
args = parser.parse_args(cmd.split())
assert args.species == "some_species"
assert len(args.genetic_maps) == 0
def test_species_two_maps(self):
parser = cli.stdpopsim_cli_parser()
cmd = "download-genetic-maps some_species map1 map2"
args = parser.parse_args(cmd.split())
assert args.species == "some_species"
assert args.genetic_maps == ["map1", "map2"]
def test_defaults(self):
parser = cli.stdpopsim_cli_parser()
cmd = "download-genetic-maps"
args = parser.parse_args([cmd])
assert args.species is None
assert len(args.genetic_maps) == 0
def test_species_no_maps(self):
parser = cli.stdpopsim_cli_parser()
cmd = "download-genetic-maps some_species"
args = parser.parse_args(cmd.split())
self.assertEqual(args.species, "some_species")
self.assertEqual(len(args.genetic_maps), 0)
def test_defaults(self):
parser = cli.stdpopsim_cli_parser()
cmd = "download-genetic-maps"
args = parser.parse_args([cmd])
self.assertEqual(args.species, None)
self.assertEqual(len(args.genetic_maps), 0)
def test_species_two_maps(self):
parser = cli.stdpopsim_cli_parser()
cmd = "download-genetic-maps some_species map1 map2"
args = parser.parse_args(cmd.split())
self.assertEqual(args.species, "some_species")
self.assertEqual(args.genetic_maps, ["map1", "map2"])
def test_very_verbose(self):
parser = cli.stdpopsim_cli_parser()
args = parser.parse_args(["-vv"] + self.basic_cmd)
with mock.patch("logging.basicConfig") as mocked_setup:
cli.setup_logging(args)
mocked_setup.assert_called_once_with(level="DEBUG", format=cli.log_format)
def test_default(self):
parser = cli.stdpopsim_cli_parser()
args = parser.parse_args(self.basic_cmd)
with mock.patch("logging.basicConfig") as mocked_setup:
cli.setup_logging(args)
mocked_setup.assert_called_once_with(level="WARN", format=cli.log_format)
