Beispiel #1
0
def writeSwigHeader(fileOut, name, plugins, classes):
    capName = strFunctions.cap(name)
    fileOut.write('#ifdef USE_{0}\n\n'.format(name.upper()))
    fileOut.write(
        '#include <sbml/packages/{0}/extension/{1}Extension.h>\n'.format(
            name, capName))
    alreadyIncluded = []
    for plugin in plugins:
        package = name
        if plugin.has_key('package') and plugin['package'] != None:
            package = plugin['package']
        capPackageName = strFunctions.cap(package)
        if package != name and alreadyIncluded.count(package) == 0:
            alreadyIncluded.append(package)
            fileOut.write(
                '#include <sbml/packages/{0}/extension/{1}Extension.h>\n'.
                format(package, capPackageName))
            fileOut.write(
                '#include <sbml/packages/{0}/common/{1}ExtensionTypes.h>\n'.
                format(package, capPackageName))
        fileOut.write(
            '#include <sbml/packages/{0}/extension/{1}{2}Plugin.h>\n'.format(
                name, capName, plugin['sbase']))
    fileOut.write(
        '#include <sbml/packages/{0}/common/{1}ExtensionTypes.h>\n'.format(
            name, capName))
    for clazz in classes:
        if clazz['typecode'] != 'HACK':
            fileOut.write('#include <sbml/packages/{0}/sbml/{1}.h>\n'.format(
                name, clazz['name']))
    fileOut.write('\n')
    fileOut.write('#endif // USE_{0} \n\n'.format(name.upper()))
Beispiel #2
0
def writeGetFunction(attrib, output, element):
  att = generalFunctions.parseAttributeForC(attrib)
  attName = att[0]
  capAttName = att[1]
  attType = att[2]
  if att[3] == 'const char *':
    attTypeCode = 'char *'
  else:
    attTypeCode = att[3]
  num = att[4]
  if attrib['type'] != 'element' and attrib['type'] != 'lo_element':
    output.write('LIBSEDML_EXTERN\n')
    output.write('{0}\n'.format(attTypeCode))
    output.write('{0}_get{1}'.format(element, capAttName))
    output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
  elif attrib['type'] == 'element':
    if attrib['name'] == 'Math' or attrib['name'] == 'math':
      output.write('LIBSEDML_EXTERN\n')
      output.write('ASTNode_t*\n')
      output.write('{0}_getMath'.format(element))
      output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
    else:
      output.write('LIBSEDML_EXTERN\n')
      output.write('{0}_t*\n'.format(strFunctions.cap(attrib['element'])))
      output.write('{0}_get{1}'.format(element, capAttName))
      output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
      output.write('LIBSEDML_EXTERN\n')
      output.write('{0}_t*\n'.format(strFunctions.cap(attrib['element'])))
      output.write('{0}_create{1}'.format(element, capAttName))
      output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
def writeCreateObject(outFile, element, sbmltypecode, attribs, isSedListOf, hasChildren=False, hasMath=False,baseClass='SedBase'):  
  if (isSedListOf == True or hasChildren == False) and baseClass  == 'SedBase':
    return;
  outFile.write('/**\n')
  outFile.write(' * return the SEDML object corresponding to next XMLToken.\n')
  outFile.write(' */\n')
  outFile.write('SedBase*\n{0}::createObject(XMLInputStream& stream)\n'.format(element))
  outFile.write('{\n')
  if baseClass == 'SedBase':
    outFile.write('  SedBase* object = NULL;\n\n')
  else:
    outFile.write('  SedBase* object = {0}::createObject(stream);\n\n'.format(baseClass))
  if hasChildren or hasMath:
    outFile.write('  const string& name   = stream.peek().getName();\n\n')
  for i in range (0, len(attribs)):
    current = attribs[i]
    if current.has_key('lo_elementName'):        
      outFile.write('  if (name == "{0}")\n'.format(current['lo_elementName']))	
      outFile.write('  {\n')	
      outFile.write('    object = &m{0};\n'.format(strFunctions.capp(current['name'])))	
      outFile.write('  }\n\n')
    elif current['type'] == 'lo_element':
      outFile.write('  if (name == "listOf{0}")\n'.format(strFunctions.capp(current['name'])))	
      outFile.write('  {\n')	
      outFile.write('    object = &m{0};\n'.format(strFunctions.capp(current['name'])))	
      outFile.write('  }\n\n')
    elif current['type'] == 'element' and (current['name'] !='Math' and current['name'] != 'math'):
      outFile.write('  if (name == "{0}")\n'.format(current['name']))	
      outFile.write('  {\n')	
      outFile.write('    m{0}= new {1}();\n'.format(strFunctions.cap(current['name']), current['element']))	
      outFile.write('    object = m{0};\n'.format(strFunctions.cap(current['name'])))	
      outFile.write('  }\n\n')
  outFile.write('  connectToChild();\n\n')
  outFile.write('  return object;\n')  
  outFile.write('}\n\n\n')  
Beispiel #4
0
def writeWriteElementsCPPCode(outFile, element, attributes, hasChildren=False, hasMath=False, baseClass='SedBase'):
  writeInternalStart(outFile)
  outFile.write('/*\n')
  outFile.write(' * write contained elements\n')
  outFile.write(' */\n')
  outFile.write('void\n{0}::writeElements (XMLOutputStream& stream) const\n'.format(element))
  outFile.write('{\n')
  outFile.write('\t{0}::writeElements(stream);\n'.format(baseClass))
  if hasChildren == True:
    for i in range(0, len(attributes)):
      if attributes[i]['type'] == 'element' and (attributes[i]['name'] != 'Math' and attributes[i]['name'] != 'math'):
        outFile.write('\tif (isSet{0}() == true)\n'.format(strFunctions.cap(attributes[i]['name'])))
        outFile.write('\t{\n\t\t')
        outFile.write('m{0}->write(stream);'.format(strFunctions.cap(attributes[i]['name'])))
        outFile.write('\n\t}\n')
      if attributes[i]['type'] == 'lo_element':
        outFile.write('\tif (getNum{0}s() > 0)\n'.format(strFunctions.cap(attributes[i]['name'])))
        outFile.write('\t{\n\t\t')
        outFile.write('m{0}.write(stream);'.format(strFunctions.cap(attributes[i]['name'])))
        outFile.write('\n\t}\n')
  if hasMath == True:
    for i in range(0, len(attributes)):
      if attributes[i]['type'] == 'element' and attributes[i]['name'] == 'Math' or attributes[i]['name'] == 'math':
        outFile.write('\tif (isSet{0}() == true)\n'.format('Math'))
        outFile.write('\t{\n\t\twriteMathML(getMath(), stream, NULL);\n\t}\n')
  outFile.write('}\n\n\n')
  writeInternalEnd(outFile)
Beispiel #5
0
def writeCopyAttributes(attrs, output, tabs, name):
  for i in range(0, len(attrs)):
    attName = strFunctions.cap(attrs[i]['name'])
    atttype = attrs[i]['type']
    if atttype == 'array':
      output.write('{0}m{1}  = NULL;\n'.format(tabs, attName, name))
      output.write('{0}set{1}({2}.m{1}, {2}.m{1}Length);\n'.format(tabs, attName, name))
    elif atttype != 'lo_element' and  atttype != 'inline_lo_element':
      if atttype != 'element':
        output.write('{0}m{1}  = {2}.m{1};\n'.format(tabs, attName, name))
      else:
        output.write('{0}if ({2}.m{1} != NULL)\n'.format(tabs, strFunctions.cap(attrs[i]['name']), name))
        output.write('{0}'.format(tabs))
        output.write('{\n')
        if attrs[i]['name'] != 'math':
          output.write('{0}  m{1} = {2}.m{1}->clone();\n'.format(tabs, strFunctions.cap(attrs[i]['name']), name))
        else:
          output.write('{0}  m{1} = {2}.m{1}->deepCopy();\n'.format(tabs, strFunctions.cap(attrs[i]['name']), name))
        output.write('{0}'.format(tabs))
        output.write('}\n')
        output.write('{0}else\n'.format(tabs))
        output.write('{0}'.format(tabs))
        output.write('{\n')
        output.write('{0}  m{1} = NULL;\n'.format(tabs, strFunctions.cap(attrs[i]['name'])))
        output.write('{0}'.format(tabs))
        output.write('}\n')
    else:
      if attName.endswith('x'):
        output.write('{0}m{1}es  = {2}.m{1}es;\n'.format(tabs, attName, name))
      elif attName.endswith('s'):
        output.write('{0}m{1}  = {2}.m{1};\n'.format(tabs, attName, name))
      else:
        output.write('{0}m{1}s  = {2}.m{1}s;\n'.format(tabs, attName, name))
    if atttype == 'double' or atttype == 'int' or atttype == 'uint' or atttype == 'bool':
      output.write('{0}mIsSet{1}  = {2}.mIsSet{1};\n'.format(tabs, attName, name))
def writeLocal(fileOut, name, classes):
  capName = name.upper()
  fileOut.write('#ifdef USE_{0}\n\n'.format(capName))
  fileOut.write('SBMLCONSTRUCTOR_EXCEPTION({0}PkgNamespaces)\n'.format(strFunctions.cap(name)))
  for i in range (0, len(classes)):
    if classes[i]['typecode'] != 'HACK':
      fileOut.write('SBMLCONSTRUCTOR_EXCEPTION({0})\n'.format(classes[i]['name']))
  for i in range (0, len(classes)):
    if (classes[i]['hasListOf'] == True):
      loName = strFunctions.listOfName(classes[i]['name'])
      fileOut.write('SBMLCONSTRUCTOR_EXCEPTION({0})\n'.format(strFunctions.cap(loName)))
  fileOut.write('\n')
  
  for i in range (0, len(classes)):
    if (classes[i]['abstract'] == True or isBaseClassForOthers(classes[i], classes)):
      fileOut.write('/**\n')
      fileOut.write(' * Convert {0} objects into the most specific object possible.\n'.format(classes[i]['name']))
      fileOut.write(' */\n')
      fileOut.write('%typemap(out) {0}*\n'.format(classes[i]['name']))
      fileOut.write('{\n')
      fileOut.write('	$result = SWIG_NewPointerObj($1, GetDowncastSwigTypeForPackage($1, "{0}"), $owner | %newpointer_flags);\n'.format(name))
      fileOut.write('}\n')
      fileOut.write('\n')
  fileOut.write('\n')
  fileOut.write('#endif // USE_{0} \n\n'.format(capName))
Beispiel #7
0
def writeCreateObject(outFile, element, sbmltypecode, attribs, isSedListOf, hasChildren=False, hasMath=False,baseClass='SedBase'):  
  if (isSedListOf == True or hasChildren == False) and baseClass  == 'SedBase':
    return;
  outFile.write('/**\n')
  outFile.write(' * return the SEDML object corresponding to next XMLToken.\n')
  outFile.write(' */\n')
  outFile.write('SedBase*\n{0}::createObject(XMLInputStream& stream)\n'.format(element))
  outFile.write('{\n')
  if baseClass == 'SedBase':
    outFile.write('\tSedBase* object = NULL;\n\n')
  else:
    outFile.write('\tSedBase* object = {0}::createObject(stream);\n\n'.format(baseClass))
  if hasChildren or hasMath:
    outFile.write('\tconst string& name   = stream.peek().getName();\n\n')
  for i in range (0, len(attribs)):
    current = attribs[i]
    if current.has_key('lo_elementName'):        
      outFile.write('\tif (name == "{0}")\n'.format(current['lo_elementName']))	
      outFile.write('\t{\n')	
      outFile.write('\t\tobject = &m{0};\n'.format(strFunctions.capp(current['name'])))	
      outFile.write('\t}\n\n')
    elif current['type'] == 'lo_element':
      outFile.write('\tif (name == "listOf{0}")\n'.format(strFunctions.capp(current['name'])))	
      outFile.write('\t{\n')	
      outFile.write('\t\tobject = &m{0};\n'.format(strFunctions.capp(current['name'])))	
      outFile.write('\t}\n\n')
    elif current['type'] == 'element' and (current['name'] !='Math' and current['name'] != 'math'):
      outFile.write('\tif (name == "{0}")\n'.format(current['name']))	
      outFile.write('\t{\n')	
      outFile.write('\t\tm{0}= new {1}();\n'.format(strFunctions.cap(current['name']), current['element']))	
      outFile.write('\t\tobject = m{0};\n'.format(strFunctions.cap(current['name'])))	
      outFile.write('\t}\n\n')
  outFile.write('\tconnectToChild();\n\n')
  outFile.write('\treturn object;\n')  
  outFile.write('}\n\n\n')  
def writePlugins(fileOut, name, plugins):
  capName = name.upper()
  fileOut.write('#ifdef USE_{0}\n'.format(capName))
  fileOut.write('if (pkgName == "{0}")\n'.format(name))
  fileOut.write('{\n')
  for i in range (0, len(plugins)):
    plugin = plugins[i]
    if (i == 0):
      fileOut.write('  if ')
    else:
      fileOut.write('  else if ')
    typecode = 'SBML_{0}'.format(createSBase(plugin['sbase'].upper()))
    if plugin.has_key('typecode') and plugin['typecode'] != None:
      typecode = plugin['typecode']
    fileOut.write('(sb->getTypeCode() == {0})\n'.format(typecode))
    fileOut.write('  {\n')
    if typecode != 'SBML_LIST_OF':
      fileOut.write('    return SWIGTYPE_p_{0}{1}Plugin;\n'.format(strFunctions.cap(name), plugin['sbase']))
    else:

      fileOut.write('    std::string name = sb->getElementName();\n')
      fileOut.write('    if(name == "{0}")\n'.format(strFunctions.lowerFirst(plugin['sbase'])))
      fileOut.write('      return SWIGTYPE_p_{0}{1}Plugin;\n'.format(strFunctions.cap(name), plugin['sbase']))
    
    fileOut.write('  }\n')
  fileOut.write('}\n')
  fileOut.write('\n')
  fileOut.write('#endif // USE_{0} \n\n'.format(capName))
Beispiel #9
0
def parseAttribute(attrib):
  attName = attrib['name']
  capAttName = strFunctions.cap(attName)
  reqd = attrib['reqd']
  if attrib['type'] == 'SId':
    attType = 'string'
    attTypeCode = 'std::string&'
    num = False
  elif attrib['type'] == 'SIdRef':
    attType = 'string'
    attTypeCode = 'std::string&'
    num = False
  elif attrib['type'] == 'UnitSIdRef':
    attType = 'string'
    attTypeCode = 'std::string&'
    num = False
  elif attrib['type'] == 'UnitSId':
    attType = 'string'
    attTypeCode = 'std::string&'
    num = False
  elif attrib['type'] == 'string':
    attType = 'string'
    attTypeCode = 'std::string&'
    num = False
  elif attrib['type'] == 'double':
    attType = 'double'
    attTypeCode = 'double'
    num = True
  elif attrib['type'] == 'int':
    attType = 'integer'
    attTypeCode = 'int'
    num = True
  elif attrib['type'] == 'uint':
    attType = 'unsigned integer'
    attTypeCode = 'unsigned int'
    num = True
  elif attrib['type'] == 'bool':
    attType = 'boolean'
    attTypeCode = 'bool'
    num = False
  elif attrib['type'] == 'element':
    attType = 'element'
    if attrib['name'] == 'math' or attrib['name'] == 'Math':
      attTypeCode = 'ASTNode*'
    else:
      #attTypeCode = 'element-not-done'
      if attrib.has_key('element'):
	    attTypeCode = '{0}*'.format(attrib['element'])
      else:
        attTypeCode = '{0}*'.format(strFunctions.cap(attrib['name']))
    num = False
  elif attrib['type'] == 'lo_element':
    attType = 'lo_element'
    attTypeCode = attrib['element']
    num = False
  else:
    attType = 'FIX ME'
    attTypeCode = 'FIX ME'
    num = False
  return [attName, capAttName, attType, attTypeCode, num, reqd]
Beispiel #10
0
def parseAttribute(attrib):
    attName = attrib['name']
    capAttName = strFunctions.cap(attName)
    reqd = attrib['reqd']
    if attrib['type'] == 'SId':
        attType = 'string'
        attTypeCode = 'std::string&'
        num = False
    elif attrib['type'] == 'SIdRef':
        attType = 'string'
        attTypeCode = 'std::string&'
        num = False
    elif attrib['type'] == 'UnitSIdRef':
        attType = 'string'
        attTypeCode = 'std::string&'
        num = False
    elif attrib['type'] == 'UnitSId':
        attType = 'string'
        attTypeCode = 'std::string&'
        num = False
    elif attrib['type'] == 'string':
        attType = 'string'
        attTypeCode = 'std::string&'
        num = False
    elif attrib['type'] == 'double':
        attType = 'double'
        attTypeCode = 'double'
        num = True
    elif attrib['type'] == 'int':
        attType = 'integer'
        attTypeCode = 'int'
        num = True
    elif attrib['type'] == 'uint':
        attType = 'unsigned integer'
        attTypeCode = 'unsigned int'
        num = True
    elif attrib['type'] == 'bool':
        attType = 'boolean'
        attTypeCode = 'bool'
        num = False
    elif attrib['type'] == 'element':
        attType = 'element'
        if attrib['name'] == 'math' or attrib['name'] == 'Math':
            attTypeCode = 'ASTNode*'
        else:
            #attTypeCode = 'element-not-done'
            if attrib.has_key('element'):
                attTypeCode = '{0}*'.format(attrib['element'])
            else:
                attTypeCode = '{0}*'.format(strFunctions.cap(attrib['name']))
        num = False
    elif attrib['type'] == 'lo_element':
        attType = 'lo_element'
        attTypeCode = attrib['element']
        num = False
    else:
        attType = 'FIX ME'
        attTypeCode = 'FIX ME'
        num = False
    return [attName, capAttName, attType, attTypeCode, num, reqd]
Beispiel #11
0
def writeIncludes(fileOut, pkg, element, members, attribs):
    fileOut.write('\n\n')
    fileOut.write('#ifndef {0}_H__\n'.format(element))
    fileOut.write('#define {0}_H__\n'.format(element))
    fileOut.write('\n\n')
    fileOut.write('#include <sbml/common/extern.h>\n')
    fileOut.write('\n\n')
    fileOut.write('#ifdef __cplusplus\n')
    fileOut.write('\n\n')
    fileOut.write('#include <sbml/extension/SBasePlugin.h>\n')
    for i in range(0, len(members)):
        mem = members[i]
        fileOut.write('#include <sbml/packages/{0}/sbml/{1}.h>\n'.format(
            pkg.lower(), mem['name']))
    if len(members) == 0:
        fileOut.write(
            '#include <sbml/packages/{0}/extension/{1}Extension.h>\n'.format(
                pkg.lower(), pkg))
    for i in range(0, len(attribs)):
        if (attribs[i]['type'] == 'element'
                or attribs[i]['type'] == 'lo_element' or attribs[i]['type']
                == 'inline_lo_element') and attribs[i]['name'] != 'math':
            if (attribs[i]['element'] == None):
                fileOut.write(
                    '#include <sbml/packages/{0}/sbml/{1}.h>\n'.format(
                        pkg.lower(), strFunctions.cap(attribs[i]['name'])))
            else:
                fileOut.write(
                    '#include <sbml/packages/{0}/sbml/{1}.h>\n'.format(
                        pkg.lower(), strFunctions.cap(attribs[i]['element'])))

    fileOut.write('\n\n')
    fileOut.write('LIBSBML_CPP_NAMESPACE_BEGIN\n')
    fileOut.write('\n\n')
Beispiel #12
0
def writePlugins(fileOut, name, plugins):
    capName = name.upper()
    fileOut.write('#ifdef USE_{0}\n'.format(capName))
    fileOut.write('if (pkgName == "{0}")\n'.format(name))
    fileOut.write('{\n')
    for i in range(0, len(plugins)):
        plugin = plugins[i]
        if (i == 0):
            fileOut.write('  if ')
        else:
            fileOut.write('  else if ')
        typecode = 'SBML_{0}'.format(createSBase(plugin['sbase'].upper()))
        if plugin.has_key('typecode') and plugin['typecode'] != None:
            typecode = plugin['typecode']
        fileOut.write('(sb->getTypeCode() == {0})\n'.format(typecode))
        fileOut.write('  {\n')
        if typecode != 'SBML_LIST_OF':
            fileOut.write('    return SWIGTYPE_p_{0}{1}Plugin;\n'.format(
                strFunctions.cap(name), plugin['sbase']))
        else:

            fileOut.write('    std::string name = sb->getElementName();\n')
            fileOut.write('    if(name == "{0}")\n'.format(
                strFunctions.lowerFirst(plugin['sbase'])))
            fileOut.write('      return SWIGTYPE_p_{0}{1}Plugin;\n'.format(
                strFunctions.cap(name), plugin['sbase']))

        fileOut.write('  }\n')
    fileOut.write('}\n')
    fileOut.write('\n')
    fileOut.write('#endif // USE_{0} \n\n'.format(capName))
Beispiel #13
0
def writeLocal(fileOut, name, classes):
    capName = name.upper()
    fileOut.write('#ifdef USE_{0}\n\n'.format(capName))
    fileOut.write('SBMLCONSTRUCTOR_EXCEPTION({0}PkgNamespaces)\n'.format(
        strFunctions.cap(name)))
    for i in range(0, len(classes)):
        if classes[i]['typecode'] != 'HACK':
            fileOut.write('SBMLCONSTRUCTOR_EXCEPTION({0})\n'.format(
                classes[i]['name']))
    for i in range(0, len(classes)):
        if (classes[i]['hasListOf'] == True):
            loName = strFunctions.listOfName(classes[i]['name'])
            fileOut.write('SBMLCONSTRUCTOR_EXCEPTION({0})\n'.format(
                strFunctions.cap(loName)))
    fileOut.write('\n')

    for i in range(0, len(classes)):
        if (classes[i]['abstract'] == True
                or isBaseClassForOthers(classes[i], classes)):
            fileOut.write('/**\n')
            fileOut.write(
                ' * Convert {0} objects into the most specific object possible.\n'
                .format(classes[i]['name']))
            fileOut.write(' */\n')
            fileOut.write('%typemap(out) {0}*\n'.format(classes[i]['name']))
            fileOut.write('{\n')
            fileOut.write(
                '	$result = SWIG_NewPointerObj($1, GetDowncastSwigTypeForPackage($1, "{0}"), $owner | %newpointer_flags);\n'
                .format(name))
            fileOut.write('}\n')
            fileOut.write('\n')
    fileOut.write('\n')
    fileOut.write('#endif // USE_{0} \n\n'.format(capName))
Beispiel #14
0
def writeCopyAttributes(attrs, output, tabs, name):
  for i in range(0, len(attrs)):
    attName = strFunctions.cap(attrs[i]['name'])
    atttype = attrs[i]['type']
    if atttype == 'array':
      output.write('{0}m{1}  = NULL;\n'.format(tabs, attName, name))
      output.write('{0}set{1}({2}.m{1}, {2}.m{1}Length);\n'.format(tabs, attName, name))
    elif atttype != 'lo_element' and  atttype != 'inline_lo_element':
      if atttype != 'element':
        output.write('{0}m{1}  = {2}.m{1};\n'.format(tabs, attName, name))
      else:
        output.write('{0}if ({2}.m{1} != NULL)\n'.format(tabs, strFunctions.cap(attrs[i]['name']), name))
        output.write('{0}'.format(tabs))
        output.write('{\n')
        if attrs[i]['name'] != 'math':
          output.write('{0}  m{1} = {2}.m{1}->clone();\n'.format(tabs, strFunctions.cap(attrs[i]['name']), name))
        else:
          output.write('{0}  m{1} = {2}.m{1}->deepCopy();\n'.format(tabs, strFunctions.cap(attrs[i]['name']), name))
        output.write('{0}'.format(tabs))
        output.write('}\n')
        output.write('{0}else\n'.format(tabs))
        output.write('{0}'.format(tabs))
        output.write('{\n')
        output.write('{0}  m{1} = NULL;\n'.format(tabs, strFunctions.cap(attrs[i]['name'])))
        output.write('{0}'.format(tabs))
        output.write('}\n')
    else:
      if attName.endswith('x'):
        output.write('{0}m{1}es  = {2}.m{1}es;\n'.format(tabs, attName, name))
      elif attName.endswith('s'):
        output.write('{0}m{1}  = {2}.m{1};\n'.format(tabs, attName, name))
      else:
        output.write('{0}m{1}s  = {2}.m{1}s;\n'.format(tabs, attName, name))
    if atttype == 'double' or atttype == 'int' or atttype == 'uint' or atttype == 'bool':
      output.write('{0}mIsSet{1}  = {2}.mIsSet{1};\n'.format(tabs, attName, name))
Beispiel #15
0
def writeCopyAttributes(attrs, output, tabs, name):
  for i in range(0, len(attrs)):
    attName = strFunctions.cap(attrs[i]['name'])
    atttype = attrs[i]['type']
    if atttype == 'element' and attName == 'Math':
      output.write('{0}m{1}  = {2}.m{1} != NULL ? {2}.m{1}->deepCopy() : NULL;\n'.format(tabs, strFunctions.cap(attrs[i]['name']), name))
    else:
      output.write('{0}m{1}  = {2}.m{1};\n'.format(tabs, strFunctions.cap(attrs[i]['name']), name))
    if atttype == 'double' or atttype == 'int' or atttype == 'uint' or atttype == 'bool':
      output.write('{0}mIsSet{1}  = {2}.mIsSet{1};\n'.format(tabs, strFunctions.cap(attrs[i]['name']), name))
Beispiel #16
0
def writeAtt(atttype, name, output, constType, pkg):
    if atttype == 'SId' or atttype == 'SIdRef' or atttype == 'UnitSId' or atttype == 'UnitSIdRef' or atttype == 'string':
        output.write('\t, m{0} ("")\n'.format(strFunctions.cap(name)))
    elif atttype == 'element':
        output.write('\t, m{0} (NULL)\n'.format(strFunctions.cap(name)))
    elif atttype == 'lo_element':
        output.write('\t, m{0} ('.format(strFunctions.cap(name)))
        if constType == 0:
            output.write(')\n')
        elif constType == 1:
            output.write('level, version)\n')
        elif constType == 2:
            output.write('{0}ns)\n'.format(pkg))
    elif atttype == 'double':
        output.write('\t, m{0} (numeric_limits<double>::quiet_NaN())\n'.format(
            strFunctions.cap(name)))
        output.write('\t, mIsSet{0} (false)\n'.format(strFunctions.cap(name)))
    elif atttype == 'int' or atttype == 'uint':
        output.write('\t, m{0} (SEDML_INT_MAX)\n'.format(
            strFunctions.cap(name)))
        output.write('\t, mIsSet{0} (false)\n'.format(strFunctions.cap(name)))
    elif atttype == 'bool':
        output.write('\t, m{0} (false)\n'.format(strFunctions.cap(name)))
        output.write('\t, mIsSet{0} (false)\n'.format(strFunctions.cap(name)))
    else:
        output.write('\tFIX ME   {0};\n'.format(name))
def writeListOfSubElements(attrib, output, element):
    loname = generalFunctions.writeListOf(strFunctions.cap(attrib['name']))
    output.write('LIBSEDML_EXTERN\n')
    output.write('int\n')
    output.write('{0}_add{1}({0}_t * {2}, '.format(
        element, strFunctions.cap(attrib['name']),
        strFunctions.objAbbrev(element)))
    output.write('{0}_t * {1});\n\n\n'.format(
        attrib['element'], strFunctions.objAbbrev(attrib['element'])))
    if attrib.has_key('abstract') == False or (attrib.has_key('abstract') and
                                               attrib['abstract'] == False):
        output.write('LIBSEDML_EXTERN\n')
        output.write('{0}_t *\n'.format(attrib['element']))
        output.write('{0}_create{1}({0}_t * {2}'.format(
            element, strFunctions.cap(attrib['name']),
            strFunctions.objAbbrev(element)))
        output.write(');\n\n\n')
    elif attrib.has_key('concrete'):
        for elem in attrib['concrete']:
            output.write('LIBSEDML_EXTERN\n')
            output.write('{0}_t *\n'.format(elem['element']))
            output.write('{0}_create{1}({0}_t * {2}'.format(
                element, strFunctions.cap(elem['name']),
                strFunctions.objAbbrev(element)))
            output.write(');\n\n\n')
    output.write('LIBSEDML_EXTERN\n')
    output.write('SedListOf_t *\n')
    output.write('{0}_get{1}({0}_t * {2})'.format(
        element, loname, strFunctions.objAbbrev(element)))
    output.write(';\n\n\n')
    output.write('LIBSEDML_EXTERN\n')
    output.write('{0}_t *\n'.format(attrib['element']))
    output.write('{0}_get{1}({0}_t * {2}, '.format(
        element, strFunctions.cap(attrib['name']),
        strFunctions.objAbbrev(element)))
    output.write('unsigned int n);\n\n\n')
    output.write('LIBSEDML_EXTERN\n')
    output.write('{0}_t *\n'.format(attrib['element']))
    output.write('{0}_get{1}ById({0}_t * {2}, '.format(
        element, strFunctions.cap(attrib['name']),
        strFunctions.objAbbrev(element)))
    output.write('const char * sid);\n\n\n')
    output.write('LIBSEDML_EXTERN\n')
    output.write('unsigned int\n')
    output.write('{0}_getNum{1}s({0}_t * {2}'.format(
        element, strFunctions.cap(attrib['name']),
        strFunctions.objAbbrev(element)))
    output.write(');\n\n\n')
    output.write('LIBSEDML_EXTERN\n')
    output.write('{0}_t *\n'.format(attrib['element']))
    output.write('{0}_remove{1}({0}_t * {2}, '.format(
        element, strFunctions.cap(attrib['name']),
        strFunctions.objAbbrev(element)))
    output.write('unsigned int n);\n\n\n')
    output.write('LIBSEDML_EXTERN\n')
    output.write('{0}_t *\n'.format(attrib['element']))
    output.write('{0}_remove{1}ById({0}_t * {2}, '.format(
        element, strFunctions.cap(attrib['name']),
        strFunctions.objAbbrev(element)))
    output.write('const char * sid);\n\n\n')
def writeReadOtherXMLCPPCode(outFile, element, hasMath = True, attribs = None, baseClass='SedBase'):
  writeInternalStart(outFile)
  outFile.write('bool\n{0}::readOtherXML (XMLInputStream& stream)\n'.format(element))
  outFile.write('{\n')
  outFile.write('  bool          read = false;\n')
  outFile.write('  const string& name = stream.peek().getName();\n\n')
  if hasMath == True: 
    outFile.write('  if (name == "math")\n  {\n')
    outFile.write('    const XMLToken elem = stream.peek();\n')
    outFile.write('    const std::string prefix = checkMathMLNamespace(elem);\n\n')
    #outFile.write('    if (stream.getSedNamespaces() == NULL)\n    {\n')
    #outFile.write('      stream.setSedNamespaces(new SedNamespaces(getLevel(), getVersion()));\n    }\n\n')
    outFile.write('    delete mMath;\n')
    outFile.write('    mMath = readMathML(stream, prefix);\n')
    #outFile.write('    if (mMath != NULL)\n    {\n      mMath->setParentSEDMLObject(this);\n    }\n')
    outFile.write('    read = true;\n  }\n\n')
  elif containsType(attribs, 'XMLNode*'):
    node = getByType(attribs, 'XMLNode*')
    outFile.write('  if (name == "{0}")\n'.format(node['name']))
    outFile.write('  {\n')	
    outFile.write('    const XMLToken& token = stream.next();\n')	
    outFile.write('    stream.skipText();\n')	
    outFile.write('    m{0} = new XMLNode(stream);\n'.format(strFunctions.cap(node['name'])))	
    outFile.write('    stream.skipPastEnd(token);\n')	
    outFile.write('    read = true;\n  }\n\n')
  elif containsType(attribs, 'DimensionDescription*'):
    node = getByType(attribs, 'DimensionDescription*')
    outFile.write('  if (name == "{0}")\n'.format(node['name']))
    outFile.write('  {\n')	
    outFile.write('    const XMLToken& token = stream.next();\n')	
    outFile.write('    m{0} = new DimensionDescription();\n'.format(strFunctions.cap(node['name'])))	
    outFile.write('    m{0}->read(stream);\n'.format(strFunctions.cap(node['name'])))	
    outFile.write('    stream.skipPastEnd(token);\n')	
    outFile.write('    read = true;\n  }\n\n')
  elif containsType(attribs, 'std::vector<double>'):
    elem = getByType(attribs, 'std::vector<double>')
    outFile.write('  while (stream.peek().getName() == "{0}")\n'.format(elem['name']))
    outFile.write('  {\n')
    outFile.write('    stream.next(); // consume start\n')
    outFile.write('    stringstream text;\n')
    outFile.write('    while(stream.isGood() && stream.peek().isText())\n')
    outFile.write('      text << stream.next().getCharacters();\n')
    outFile.write('    double value; text >> value;\n')
    outFile.write('    if (!text.fail())\n')
    outFile.write('      m{0}.push_back(value);\n'.format(strFunctions.capp(elem['name'])))
    outFile.write('    stream.next(); // consume end\n')
    outFile.write('    read = true;\n')
    outFile.write('  }\n')
  outFile.write('  if ({0}::readOtherXML(stream))\n'.format(baseClass))
  outFile.write('  {\n    read = true;\n  }\n')
  outFile.write('  return read;\n')
  outFile.write('}\n\n\n')
  writeInternalEnd(outFile)
Beispiel #19
0
def writeCopyAttributes(attrs, output, tabs, name):
  for i in range(0, len(attrs)):
    attName = strFunctions.cap(attrs[i]['name'])
    atttype = attrs[i]['type']
    if atttype == 'element' and attName == 'Math':
      output.write('{0}m{1}  = {2}.m{1} != NULL ? {2}.m{1}->deepCopy() : NULL;\n'.format(tabs, strFunctions.cap(attrs[i]['name']), name))
    elif atttype == 'XMLNode*' or atttype == 'DimensionDescription*':
      output.write('{0}m{1}  = {2}.m{1} != NULL ? {2}.m{1}->clone() : NULL;\n'.format(tabs, strFunctions.cap(attrs[i]['name']), name))
    else:
      output.write('{0}m{1}  = {2}.m{1};\n'.format(tabs, strFunctions.capp(attrs[i]['name'], atttype == 'lo_element' or atttype == 'std::vector<double>'), name))
    if atttype == 'double' or atttype == 'int' or atttype == 'uint' or atttype == 'bool':
      output.write('{0}mIsSet{1}  = {2}.mIsSet{1};\n'.format(tabs, strFunctions.cap(attrs[i]['name']), name))
def writeJavaNS(fileOut, name):
  capName = name.upper()
  fileOut.write('/**\n')
  fileOut.write(' * casting to most specific SBMLNamespaces object\n */\n\n')
  fileOut.write('#ifdef USE_{0}\n'.format(capName))
  fileOut.write('%pragma(java) modulecode =\n')
  fileOut.write('%{\n')
  fileOut.write('  if (ns.hasURI({0}Extension.getXmlnsL3V1V1()))\n'.format(strFunctions.cap(name)))
  fileOut.write('  {\n')
  fileOut.write('    return new {0}PkgNamespaces(cPtr, owner);\n'.format(strFunctions.cap(name)))
  fileOut.write('  }\n')
  fileOut.write('%}\n')
  fileOut.write('#endif /* USE_{0} */\n\n'.format(capName))
Beispiel #21
0
def writeCopyAttributes(attrs, output, tabs, name):
    for i in range(0, len(attrs)):
        attName = strFunctions.cap(attrs[i]['name'])
        atttype = attrs[i]['type']
        if atttype == 'element' and attName == 'Math':
            output.write(
                '{0}m{1}  = {2}.m{1} != NULL ? {2}.m{1}->deepCopy() : NULL;\n'.
                format(tabs, strFunctions.cap(attrs[i]['name']), name))
        else:
            output.write('{0}m{1}  = {2}.m{1};\n'.format(
                tabs, strFunctions.cap(attrs[i]['name']), name))
        if atttype == 'double' or atttype == 'int' or atttype == 'uint' or atttype == 'bool':
            output.write('{0}mIsSet{1}  = {2}.mIsSet{1};\n'.format(
                tabs, strFunctions.cap(attrs[i]['name']), name))
Beispiel #22
0
def writeAtt(atttype, name, output, constType, pkg):
  if atttype == 'SId' or atttype == 'SIdRef' or atttype == 'UnitSId' or atttype == 'UnitSIdRef' or atttype == 'string':
    output.write('\t, m{0} ("")\n'.format(strFunctions.cap(name)))
  elif atttype == 'element' or atttype == 'XMLNode*':
    output.write('\t, m{0} (NULL)\n'.format(strFunctions.cap(name)))
  elif atttype == 'lo_element':
    output.write('\t, m{0} ('.format(strFunctions.capp(name)))
    if constType == 0:
      output.write(')\n')
    elif constType == 1:
      output.write('level, version)\n')
    elif constType == 2:
      output.write('{0}ns)\n'.format(pkg))
  elif atttype == 'double':
    output.write('\t, m{0} (numeric_limits<double>::quiet_NaN())\n'.format(strFunctions.cap(name)))
    output.write('\t, mIsSet{0} (false)\n'.format(strFunctions.cap(name)))
  elif atttype == 'int' or atttype == 'uint':
    output.write('\t, m{0} (SEDML_INT_MAX)\n'.format(strFunctions.cap(name)))
    output.write('\t, mIsSet{0} (false)\n'.format(strFunctions.cap(name)))
  elif atttype == 'bool':
    output.write('\t, m{0} (false)\n'.format(strFunctions.cap(name)))
    output.write('\t, mIsSet{0} (false)\n'.format(strFunctions.cap(name)))
  elif atttype == 'std::vector<double>':
    output.write('\t, m{0} ()\n'.format(strFunctions.capp(name)))
  else:
    output.write('\tFIX ME   {0};\n'.format(name))
Beispiel #23
0
def writeJavaNS(fileOut, name):
    capName = name.upper()
    fileOut.write('/**\n')
    fileOut.write(' * casting to most specific SBMLNamespaces object\n */\n\n')
    fileOut.write('#ifdef USE_{0}\n'.format(capName))
    fileOut.write('%pragma(java) modulecode =\n')
    fileOut.write('%{\n')
    fileOut.write('  if (ns.hasURI({0}Extension.getXmlnsL3V1V1()))\n'.format(
        strFunctions.cap(name)))
    fileOut.write('  {\n')
    fileOut.write('    return new {0}PkgNamespaces(cPtr, owner);\n'.format(
        strFunctions.cap(name)))
    fileOut.write('  }\n')
    fileOut.write('%}\n')
    fileOut.write('#endif /* USE_{0} */\n\n'.format(capName))
def writeListOfSubFunctions(attrib, output, element, elementDict):
  loname = generalFunctions.writeListOf(strFunctions.cap(attrib['name']))
  output.write('  /**\n')
  output.write('   * Returns the  \"{0}\"'.format(loname))
  output.write(' in this {0} object.\n'.format(element))
  output.write('   *\n')
  output.write('   * @return the \"{0}\"'.format(loname))
  output.write(' attribute of this {0}.\n'.format(element))
  output.write('   */\n')
  output.write('  const {0}*'.format(loname))
  output.write(' getListOf{0}s() const;\n\n\n'.format(strFunctions.cap(attrib['name'])))
  writeListOfHeader.writeGetFunctions(output, strFunctions.cap(attrib['name']), attrib['element'], True, element)
  output.write('  /**\n')
  output.write('   * Adds a copy the given \"{0}\" to this {1}.\n'.format(attrib['element'], element))
  output.write('   *\n')
  output.write('   * @param {0}; the {1} object to add\n'.format(strFunctions.objAbbrev(attrib['element']), attrib['element']))
  output.write('   *\n')
  output.write('   * @return integer value indicating success/failure of the\n')
  output.write('   * function.  @if clike The value is drawn from the\n')
  output.write('   * enumeration #OperationReturnValues_t. @endif The possible values\n')
  output.write('   * returned by this function are:\n')
  output.write('   * @li LIBSEDML_OPERATION_SUCCESS\n')
  output.write('   * @li LIBSEDML_INVALID_ATTRIBUTE_VALUE\n')
  output.write('   */\n')
  output.write('  int add{0}(const {1}* {2});\n\n\n'.format(strFunctions.cap(attrib['name']), attrib['element'], strFunctions.objAbbrev(attrib['element'])))
  output.write('  /**\n')
  output.write('   * Get the number of {0} objects in this {1}.\n'.format(attrib['element'], element))
  output.write('   *\n')
  output.write('   * @return the number of {0} objects in this {1}\n'.format(attrib['element'], element))
  output.write('   */\n')
  output.write('  unsigned int getNum{0}s() const;\n\n\n'.format(strFunctions.cap(attrib['name'])))
  if attrib.has_key('abstract') == False or (attrib.has_key('abstract') and attrib['abstract'] == False):
    output.write('  /**\n')
    output.write('   * Creates a new {0} object, adds it to this {1}s\n'.format(attrib['element'], element))
    output.write('   * {0} and returns the {1} object created.\n'.format(loname, attrib['element']))
    output.write('   *\n')
    output.write('   * @return a new {0} object instance\n'.format(attrib['element']))
    output.write('   *\n')
    output.write('   * @see add{0}(const {1}* {2})\n'.format(strFunctions.cap(attrib['name']), attrib['element'], strFunctions.objAbbrev(attrib['element'])))
    output.write('   */\n')
    output.write('  {0}* create{1}();\n\n\n'.format(attrib['element'], strFunctions.cap(attrib['name'])))
  elif attrib.has_key('concrete'):
    for elem in attrib['concrete']:
      output.write('  /**\n')
      output.write('   * Creates a new {0} object, adds it to this {1}s\n'.format(elem['element'], element))
      output.write('   * {0} and returns the {1} object created.\n'.format(loname, elem['element']))
      output.write('   *\n')
      output.write('   * @return a new {0} object instance\n'.format(elem['element']))
      output.write('   *\n')
      output.write('   * @see add{0}(const {0}* {1})\n'.format(attrib['element'], strFunctions.objAbbrev(attrib['element'])))
      output.write('   */\n')
      output.write('  {0}* create{1}();\n\n\n'.format(elem['element'], strFunctions.cap(elem['name'])))
  writeListOfHeader.writeRemoveFunctions(output, strFunctions.cap(attrib['name']), attrib['element'], True, element)
Beispiel #25
0
def writeUnsetFunction(attrib, output, element):
  attName = attrib['name']
  capAttName = strFunctions.cap(attName)
  if attrib['type'] == 'lo_element' or attrib['type'] == 'inline_lo_element':
    return
  elif attrib['type'] == 'element':
    output.write('  /**\n')
    output.write('   * Unsets the \"{0}\"'.format(attName))
    output.write(' element of this {0}.\n'.format(element))
    output.write('   *\n')
    output.write('   * @return integer value indicating success/failure of the\n')
    output.write('   * function.  @if clike The value is drawn from the\n')
    output.write('   * enumeration #OperationReturnValues_t. @endif The possible values\n')
    output.write('   * returned by this function are:\n')
    output.write('   * @li LIBSBML_OPERATION_SUCCESS\n')
    output.write('   * @li LIBSBML_OPERATION_FAILED\n')
    output.write('   */\n')
    output.write('  virtual int unset{0}();\n\n\n'.format(capAttName))
  else:
    output.write('  /**\n')
    output.write('   * Unsets the value of the \"{0}\"'.format(attName))
    output.write(' attribute of this {0}.\n'.format(element))
    output.write('   *\n')
    output.write('   * @return integer value indicating success/failure of the\n')
    output.write('   * function.  @if clike The value is drawn from the\n')
    output.write('   * enumeration #OperationReturnValues_t. @endif The possible values\n')
    output.write('   * returned by this function are:\n')
    output.write('   * @li LIBSBML_OPERATION_SUCCESS\n')
    output.write('   * @li LIBSBML_OPERATION_FAILED\n')
    output.write('   */\n')
    output.write('  virtual int unset{0}();\n\n\n'.format(capAttName))
Beispiel #26
0
def writeConnectToParent(outFile,
                         element,
                         sbmltypecode,
                         attribs,
                         isSedListOf,
                         hasChildren=False,
                         hasMath=False,
                         baseClass='SedBase'):
    #print 'isSedListOf={0} hasChildren={1} hasMath={2}'.format(isSedListOf, hasChildren, hasMath)
    if isSedListOf or hasChildren == False:
        return
    outFile.write('/*\n')
    outFile.write(
        ' * Read values from the given XMLAttributes set into their specific fields.\n'
    )
    outFile.write(' */\n')
    outFile.write('void\n{0}::connectToChild ()\n'.format(element))
    outFile.write('{\n')
    outFile.write('\t{0}::connectToChild();\n\n'.format(baseClass))
    for i in range(0, len(attribs)):
        current = attribs[i]
        if current['type'] == 'lo_element':
            outFile.write('\tm{0}.connectToParent(this);\n'.format(
                strFunctions.cap(current['name'])))
    outFile.write('}\n\n\n')
Beispiel #27
0
def writeCommonCPPCode(outFile,
                       element,
                       sbmltypecode,
                       attribs,
                       isSedListOf,
                       hasChildren=False,
                       hasMath=False,
                       elementDict=None,
                       baseClass='SedBase'):
    type = elementDict['name']
    name = elementDict['name']
    if elementDict.has_key('elementName'):
        name = strFunctions.cap(elementDict['elementName'])
    if elementDict.has_key('element'):
        type = elementDict['element']
    if isSedListOf == True:
        element = writeListOf(name)
    writeGetElementNameCPPCode(outFile, element, isSedListOf, elementDict)
    if hasChildren or baseClass != 'SedBase':
        writeCreateObject(outFile, element, sbmltypecode, attribs, isSedListOf,
                          hasChildren, hasMath, baseClass)
        writeConnectToParent(outFile, element, sbmltypecode, attribs,
                             isSedListOf, hasChildren, hasMath, baseClass)
    writeGetTypeCodeCPPCode(outFile, element, sbmltypecode, isSedListOf)
    if isSedListOf == False:
        writeHasReqdAttribCPPCode(outFile, element, attribs, baseClass)
    if hasChildren == True or hasMath == True:
        writeHasReqdElementsCPPCode(outFile, element, attribs, baseClass)
Beispiel #28
0
def writeUnsetFunction(attrib, output, element):
  attName = attrib['name']
  capAttName = strFunctions.cap(attName)
  if attrib['type'] == 'lo_element' or attrib['type'] == 'inline_lo_element':
    return
  elif attrib['type'] == 'element':
    output.write('  /**\n')
    output.write('   * Unsets the \"{0}\"'.format(attName))
    output.write(' element of this {0}.\n'.format(element))
    output.write('   *\n')
    output.write('   * @return integer value indicating success/failure of the\n')
    output.write('   * function.  @if clike The value is drawn from the\n')
    output.write('   * enumeration #OperationReturnValues_t. @endif The possible values\n')
    output.write('   * returned by this function are:\n')
    output.write('   * @li LIBSBML_OPERATION_SUCCESS\n')
    output.write('   * @li LIBSBML_OPERATION_FAILED\n')
    output.write('   */\n')
    output.write('  virtual int unset{0}();\n\n\n'.format(capAttName))
  else:
    output.write('  /**\n')
    output.write('   * Unsets the value of the \"{0}\"'.format(attName))
    output.write(' attribute of this {0}.\n'.format(element))
    output.write('   *\n')
    output.write('   * @return integer value indicating success/failure of the\n')
    output.write('   * function.  @if clike The value is drawn from the\n')
    output.write('   * enumeration #OperationReturnValues_t. @endif The possible values\n')
    output.write('   * returned by this function are:\n')
    output.write('   * @li LIBSBML_OPERATION_SUCCESS\n')
    output.write('   * @li LIBSBML_OPERATION_FAILED\n')
    output.write('   */\n')
    output.write('  virtual int unset{0}();\n\n\n'.format(capAttName))
Beispiel #29
0
def writeProtectedFunctions(output, element, package, name, elementDict):
    type = elementDict['name']
    elName = elementDict['name']
    if elementDict.has_key('elementName'):
        elName = strFunctions.cap(elementDict['elementName'])
    if elementDict.has_key('element'):
        type = elementDict['element']

    listOf = generalFunctions.writeListOf(elName)
    generalFunctions.writeInternalStart(output)
    output.write('/*\n')
    output.write(' * Creates a new {0} in this {1}\n'.format(element, listOf))
    output.write(' */\n')
    output.write(
        'SedBase*\n{0}::createObject(XMLInputStream& stream)\n'.format(listOf))
    output.write('{\n')
    output.write('\tconst std::string& name   = stream.peek().getName();\n')
    output.write('\tSedBase* object = NULL;\n\n')
    if elementDict == None or elementDict.has_key('abstract') == False or (
            elementDict.has_key('abstract')
            and elementDict['abstract'] == False):
        output.write('\tif (name == "{0}")\n'.format(name))
        output.write('\t{\n')
        output.write(
            '\t\tobject = new {0}(getSedNamespaces());\n'.format(element))
        output.write('\t\tappendAndOwn(object);\n\t}\n\n')
    elif elementDict != None and elementDict.has_key('concrete'):
        for elem in elementDict['concrete']:
            output.write('\tif (name == "{0}")\n'.format(elem['name']))
            output.write('\t{\n')
            output.write('\t\tobject = new {0}(getSedNamespaces());\n'.format(
                elem['element']))
            output.write('\t\tappendAndOwn(object);\n\t}\n\n')
    output.write('\treturn object;\n')
    output.write('}\n\n\n')
    generalFunctions.writeInternalEnd(output)
    generalFunctions.writeInternalStart(output)
    output.write('/*\n')
    output.write(
        ' * Write the namespace for the {0} package.\n'.format(package))
    output.write(' */\n')
    output.write(
        'void\n{0}::writeXMLNS(XMLOutputStream& stream) const\n'.format(
            listOf))
    output.write('{\n')
    output.write('\tXMLNamespaces xmlns;\n\n')
    output.write('\tstd::string prefix = getPrefix();\n\n')
    output.write('\tif (prefix.empty())\n')
    output.write('\t{\n')
    output.write(
        '\t\tif (getNamespaces() != NULL && !getNamespaces()->hasURI(SEDML_XMLNS_L1))\n'
    )
    output.write('\t\t{\n')
    output.write('\t\t\txmlns.add(SEDML_XMLNS_L1,prefix);\n')
    output.write('\t\t}\n')
    output.write('\t}\n\n')
    output.write('\tstream << xmlns;\n')
    output.write('}\n\n\n')
    generalFunctions.writeInternalEnd(output)
Beispiel #30
0
def writeSetDocCPPCode(outFile, element,attribs, baseClass='SedBase'):
  writeInternalStart(outFile)
  outFile.write('/*\n')
  outFile.write(' * Sets the parent SedDocument.\n')
  outFile.write(' */\n')
  outFile.write('void\n{0}::setSedDocument (SedDocument* d)\n'.format(element))
  outFile.write('{\n')
  outFile.write('\t{0}::setSedDocument(d);\n'.format(baseClass))
  for i in range (0, len(attribs)):
    if attribs[i]['type'] == 'lo_element' or ( attribs[i]['type'] == 'element' and attribs[i]['name'] != 'math'):
      if attribs[i]['reqd'] == True or attribs[i]['type'] == 'lo_element':
        outFile.write('\tm{0}.setSedDocument(d);\n'.format(strFunctions.capp(attribs[i]['name'], attribs[i]['type'] == 'lo_element')))
      else:
        outFile.write('\tif (m{0} != NULL)\n'.format(strFunctions.cap(attribs[i]['name'])))
        outFile.write('\t\tm{0}->setSedDocument(d);\n'.format(strFunctions.cap(attribs[i]['name'])))
  outFile.write('}\n\n\n')
  writeInternalEnd(outFile)
def writeSetDocCPPCode(outFile, element,attribs, baseClass='SedBase'):
  writeInternalStart(outFile)
  outFile.write('/*\n')
  outFile.write(' * Sets the parent SedDocument.\n')
  outFile.write(' */\n')
  outFile.write('void\n{0}::setSedDocument (SedDocument* d)\n'.format(element))
  outFile.write('{\n')
  outFile.write('  {0}::setSedDocument(d);\n'.format(baseClass))
  for i in range (0, len(attribs)):
    if attribs[i]['type'] == 'lo_element' or ( attribs[i]['type'] == 'element' and attribs[i]['name'] != 'math'):
      if attribs[i]['reqd'] == True or attribs[i]['type'] == 'lo_element':
        outFile.write('  m{0}.setSedDocument(d);\n'.format(strFunctions.capp(attribs[i]['name'], attribs[i]['type'] == 'lo_element')))
      else:
        outFile.write('  if (m{0} != NULL)\n'.format(strFunctions.cap(attribs[i]['name'])))
        outFile.write('    m{0}->setSedDocument(d);\n'.format(strFunctions.cap(attribs[i]['name'])))
  outFile.write('}\n\n\n')
  writeInternalEnd(outFile)
Beispiel #32
0
def createHeader(element, header):
    type = element['name']
    name = element['name']
    if element.has_key('elementName'):
        name = strFunctions.cap(element['elementName'])
    if element.has_key('element'):
        type = element['element']
    writeClass(header, name, type, element['package'], element)
def writeExt(fileOut, name):
  capName = name.upper()
  fileOut.write('#ifdef USE_{0}\n'.format(capName))
  fileOut.write('if (pkgName == "{0}")\n'.format(name))
  fileOut.write('{\n')
  fileOut.write('  return SWIGTYPE_p_{0}Extension;\n'.format(strFunctions.cap(name)))
  fileOut.write('}\n')
  fileOut.write('#endif // USE_{0} \n\n'.format(capName))
Beispiel #34
0
def addCMakeFilename(outFile, filename, element):
    outFile.write(
        '#################################################################################\n'
    )
    outFile.write('#\n')
    outFile.write('# @file:   {0}\n'.format(filename))
    outFile.write('# @brief:  CMake configuration for L3 {0} package\n'.format(
        strFunctions.cap(element)))
    outFile.write('# @author: Generated by autocreate code\n#\n')
Beispiel #35
0
def writeConnectToParent(outFile, element, sbmltypecode, attribs, isSedListOf, hasChildren=False, hasMath=False, baseClass='SedBase'):  
  #print 'isSedListOf={0} hasChildren={1} hasMath={2}'.format(isSedListOf, hasChildren, hasMath)
  if isSedListOf or hasChildren == False:
    return;
  outFile.write('/*\n')
  outFile.write(' * Read values from the given XMLAttributes set into their specific fields.\n')
  outFile.write(' */\n')
  outFile.write('void\n{0}::connectToChild ()\n'.format(element))
  outFile.write('{\n')
  outFile.write('\t{0}::connectToChild();\n\n'.format(baseClass))
  for i in range (0, len(attribs)):
    if attribs[i]['type'] == 'lo_element' or ( attribs[i]['type'] == 'element' and attribs[i]['name'] != 'math'):
      if attribs[i]['reqd'] == True or attribs[i]['type'] == 'lo_element':
        outFile.write('\tm{0}.connectToParent(this);\n'.format(strFunctions.capp(attribs[i]['name'],attribs[i]['type'] == 'lo_element')))
      else:
        outFile.write('\tif (m{0} != NULL)\n'.format(strFunctions.cap(attribs[i]['name'])))
        outFile.write('\t\tm{0}->connectToParent(this);\n'.format(strFunctions.cap(attribs[i]['name'])))
  outFile.write('}\n\n\n')  
Beispiel #36
0
def writeExt(fileOut, name):
    capName = name.upper()
    fileOut.write('#ifdef USE_{0}\n'.format(capName))
    fileOut.write('if (pkgName == "{0}")\n'.format(name))
    fileOut.write('{\n')
    fileOut.write('  return SWIGTYPE_p_{0}Extension;\n'.format(
        strFunctions.cap(name)))
    fileOut.write('}\n')
    fileOut.write('#endif // USE_{0} \n\n'.format(capName))
def writeConnectToParent(outFile, element, sbmltypecode, attribs, isSedListOf, hasChildren=False, hasMath=False, baseClass='SedBase'):  
  #print 'isSedListOf={0} hasChildren={1} hasMath={2}'.format(isSedListOf, hasChildren, hasMath)
  if isSedListOf or hasChildren == False:
    return;
  outFile.write('/*\n')
  outFile.write(' * Read values from the given XMLAttributes set into their specific fields.\n')
  outFile.write(' */\n')
  outFile.write('void\n{0}::connectToChild ()\n'.format(element))
  outFile.write('{\n')
  outFile.write('  {0}::connectToChild();\n\n'.format(baseClass))
  for i in range (0, len(attribs)):
    if attribs[i]['type'] == 'lo_element' or ( attribs[i]['type'] == 'element' and attribs[i]['name'] != 'math'):
      if attribs[i]['reqd'] == True or attribs[i]['type'] == 'lo_element':
        outFile.write('  m{0}.connectToParent(this);\n'.format(strFunctions.capp(attribs[i]['name'],attribs[i]['type'] == 'lo_element')))
      else:
        outFile.write('  if (m{0} != NULL)\n'.format(strFunctions.cap(attribs[i]['name'])))
        outFile.write('    m{0}->connectToParent(this);\n'.format(strFunctions.cap(attribs[i]['name'])))
  outFile.write('}\n\n\n')  
Beispiel #38
0
def writeCode(name):
    capName = name.upper()
    codeName = name + '-register.cxx'
    fileOut = open(codeName, 'w')
    fileHeaders.addFilename(fileOut, codeName, name)
    fileHeaders.addLicence(fileOut)
    fileOut.write('\n')
    fileOut.write('#ifdef USE_{0}\n'.format(capName))
    fileOut.write('  {0}Extension::init();\n'.format(strFunctions.cap(name)))
    fileOut.write('#endif\n')
def writeCreateObject(fileOut, mem, ifCount, pkg):
  name = strFunctions.cap(mem['name'])
  if ifCount == 1:
    fileOut.write('    if (name == "{0}" ) \n'.format(strFunctions.lowerFirst(name)))
  else:
    fileOut.write('    else if (name == "{0}" ) \n'.format(strFunctions.lowerFirst(name)))
  fileOut.write('    { \n')
  fileOut.write('      m{0} = new {0}({1}ns);\n\n'.format(name, pkg.lower()))
  fileOut.write('      object = m{0};\n\n'.format(name))
  fileOut.write('    } \n')
Beispiel #40
0
def writeCode(name):
	capName = name.upper()
	codeName = name + '-register.cxx'
	fileOut = open(codeName, 'w')
	fileHeaders.addFilename(fileOut, codeName, name)
	fileHeaders.addLicence(fileOut)
	fileOut.write('\n')
	fileOut.write('#ifdef USE_{0}\n'.format(capName))
	fileOut.write('  {0}Extension::init();\n'.format(strFunctions.cap(name)))
	fileOut.write('#endif\n')
Beispiel #41
0
def writeWriteElementsCPPCode(outFile,
                              element,
                              attributes,
                              hasChildren=False,
                              hasMath=False,
                              baseClass='SedBase'):
    writeInternalStart(outFile)
    outFile.write('/*\n')
    outFile.write(' * write contained elements\n')
    outFile.write(' */\n')
    outFile.write(
        'void\n{0}::writeElements (XMLOutputStream& stream) const\n'.format(
            element))
    outFile.write('{\n')
    outFile.write('\t{0}::writeElements(stream);\n'.format(baseClass))
    if hasChildren == True:
        for i in range(0, len(attributes)):
            if attributes[i]['type'] == 'element' and (
                    attributes[i]['name'] != 'Math'
                    and attributes[i]['name'] != 'math'):
                outFile.write('\tif (isSet{0}() == true)\n'.format(
                    strFunctions.cap(attributes[i]['name'])))
                outFile.write('\t{\n\t\t')
                outFile.write('m{0}->write(stream);'.format(
                    strFunctions.cap(attributes[i]['name'])))
                outFile.write('\n\t}\n')
            if attributes[i]['type'] == 'lo_element':
                outFile.write('\tif (getNum{0}s() > 0)\n'.format(
                    strFunctions.cap(attributes[i]['name'])))
                outFile.write('\t{\n\t\t')
                outFile.write('m{0}.write(stream);'.format(
                    strFunctions.cap(attributes[i]['name'])))
                outFile.write('\n\t}\n')
    if hasMath == True:
        for i in range(0, len(attributes)):
            if attributes[i]['type'] == 'element' and attributes[i][
                    'name'] == 'Math' or attributes[i]['name'] == 'math':
                outFile.write('\tif (isSet{0}() == true)\n'.format('Math'))
                outFile.write(
                    '\t{\n\t\twriteMathML(getMath(), stream, NULL);\n\t}\n')
    outFile.write('}\n\n\n')
    writeInternalEnd(outFile)
Beispiel #42
0
def createHeader(element, header):
  type = element['name']
  name = element['name']
  if element.has_key('elementName'):
    name = strFunctions.cap(element['elementName']) 
  if element.has_key('element'):
    type = element['element']
  writeClass(header, name, type, element['package'], element)

 

  
def writeCopyAttributes(attrs, output, tabs, name):
    for i in range(0, len(attrs)):
        attName = strFunctions.cap(attrs[i]['name'])
        atttype = attrs[i]['type']
        if atttype == 'element' and attName == 'Math':
            output.write(
                '{0}m{1}  = {2}.m{1} != NULL ? {2}.m{1}->deepCopy() : NULL;\n'.
                format(tabs, strFunctions.cap(attrs[i]['name']), name))
        elif atttype == 'XMLNode*' or atttype == 'DimensionDescription*':
            output.write(
                '{0}m{1}  = {2}.m{1} != NULL ? {2}.m{1}->clone() : NULL;\n'.
                format(tabs, strFunctions.cap(attrs[i]['name']), name))
        else:
            output.write('{0}m{1}  = {2}.m{1};\n'.format(
                tabs,
                strFunctions.capp(
                    attrs[i]['name'], atttype == 'lo_element'
                    or atttype == 'std::vector<double>'), name))
        if atttype == 'double' or atttype == 'int' or atttype == 'uint' or atttype == 'bool':
            output.write('{0}mIsSet{1}  = {2}.mIsSet{1};\n'.format(
                tabs, strFunctions.cap(attrs[i]['name']), name))
def writeSwigHeader(fileOut, name, plugins, classes):
  capName = strFunctions.cap(name)
  fileOut.write('#ifdef USE_{0}\n\n'.format(name.upper()))
  fileOut.write('#include <sbml/packages/{0}/extension/{1}Extension.h>\n'.format(name, capName))
  alreadyIncluded = []
  for plugin in plugins:
    package = name
    if plugin.has_key('package') and plugin['package'] != None:
      package = plugin['package']
    capPackageName = strFunctions.cap(package)
    if package != name and alreadyIncluded.count(package) == 0:
      alreadyIncluded.append(package)
      fileOut.write('#include <sbml/packages/{0}/extension/{1}Extension.h>\n'.format(package, capPackageName))
      fileOut.write('#include <sbml/packages/{0}/common/{1}ExtensionTypes.h>\n'.format(package, capPackageName))
    fileOut.write('#include <sbml/packages/{0}/extension/{1}{2}Plugin.h>\n'.format(name, capName, plugin['sbase']))
  fileOut.write('#include <sbml/packages/{0}/common/{1}ExtensionTypes.h>\n'.format(name, capName))
  for clazz in classes:
    if clazz['typecode'] != 'HACK':
      fileOut.write('#include <sbml/packages/{0}/sbml/{1}.h>\n'.format(name, clazz['name']))
  fileOut.write('\n')
  fileOut.write('#endif // USE_{0} \n\n'.format(name.upper()))
Beispiel #45
0
def writeCreateObject(fileOut, mem, ifCount, pkg):
    name = strFunctions.cap(mem['name'])
    if ifCount == 1:
        fileOut.write('    if (name == "{0}" ) \n'.format(
            strFunctions.lowerFirst(name)))
    else:
        fileOut.write('    else if (name == "{0}" ) \n'.format(
            strFunctions.lowerFirst(name)))
    fileOut.write('    { \n')
    fileOut.write('      m{0} = new {0}({1}ns);\n\n'.format(name, pkg.lower()))
    fileOut.write('      object = m{0};\n\n'.format(name))
    fileOut.write('    } \n')
Beispiel #46
0
def writeHeader(name):
    capName = name.upper()
    codeName = name + '-register.h'
    fileOut = open(codeName, 'w')
    fileHeaders.addFilename(fileOut, codeName, name)
    fileHeaders.addLicence(fileOut)
    fileOut.write('\n')
    fileOut.write('#ifdef USE_{0}\n'.format(capName))
    fileOut.write(
        '  #include <sbml/packages/{0}/extension/{1}Extension.h>\n'.format(
            name, strFunctions.cap(name)))
    fileOut.write('#endif\n\n')
Beispiel #47
0
def writeAddFunction(code, type, listOf, name):
    code.write('/**\n')
    code.write(' * Adds a copy the given \"{0}\" to this {1}.\n'.format(
        type, listOf))
    code.write(' *\n')
    code.write(' * @param {0}; the {1} object to add\n'.format(
        strFunctions.objAbbrev(type), type))
    code.write(' *\n')
    code.write(' * @return integer value indicating success/failure of the\n')
    code.write(' * function.  @if clike The value is drawn from the\n')
    code.write(
        ' * enumeration #OperationReturnValues_t. @endif The possible values\n'
    )
    code.write(' * returned by this function are:\n')
    code.write(' * @li LIBSBML_OPERATION_SUCCESS\n')
    code.write(' * @li LIBSBML_INVALID_ATTRIBUTE_VALUE\n')
    code.write(' */\n')
    code.write('int\n')
    code.write('{0}::add{1}(const {2}* {3})\n'.format(
        listOf, strFunctions.cap(name), type, strFunctions.objAbbrev(type)))
    code.write('{\n')

    code.write('  if ({0} == NULL)\n'.format(strFunctions.objAbbrev(type)))
    code.write('  {\n')
    code.write('    return LIBSBML_OPERATION_FAILED;\n')
    code.write('  }\n')
    code.write('  else if ({0}->hasRequiredAttributes() == false)\n'.format(
        strFunctions.objAbbrev(type)))
    code.write('  {\n')
    code.write('    return LIBSBML_INVALID_OBJECT;\n')
    code.write('  }\n')
    code.write('  else if (getLevel() != {0}->getLevel())\n'.format(
        strFunctions.objAbbrev(type)))
    code.write('  {\n')
    code.write('    return LIBSBML_LEVEL_MISMATCH;\n')
    code.write('  }\n')
    code.write('  else if (getVersion() != {0}->getVersion())\n'.format(
        strFunctions.objAbbrev(type)))
    code.write('  {\n')
    code.write('    return LIBSBML_VERSION_MISMATCH;\n')
    code.write('  }\n')
    code.write(
        '  else if (matchesRequiredSBMLNamespacesForAddition(static_cast<const SBase *>({0})) == false)\n'
        .format(strFunctions.objAbbrev(type)))
    code.write('  {\n')
    code.write('    return LIBSBML_NAMESPACES_MISMATCH;\n')
    code.write('  }\n')
    code.write('  else\n')
    code.write('  {\n')
    code.write('\tappend({0});\n'.format(strFunctions.objAbbrev(type)))
    code.write('    return LIBSBML_OPERATION_SUCCESS;\n')
    code.write('  }\n')
    code.write('}\n\n\n')
Beispiel #48
0
def writeWriteElementsCPPCode(outFile, element, attributes, hasChildren=False, hasMath=False, baseClass='SedBase'):
  writeInternalStart(outFile)
  outFile.write('/*\n')
  outFile.write(' * write contained elements\n')
  outFile.write(' */\n')
  outFile.write('void\n{0}::writeElements (XMLOutputStream& stream) const\n'.format(element))
  outFile.write('{\n')
  outFile.write('\t{0}::writeElements(stream);\n'.format(baseClass))
  if hasChildren == True:
    for i in range(0, len(attributes)):
      if attributes[i]['type'] == 'element' and (attributes[i]['name'] != 'Math' and attributes[i]['name'] != 'math'):
        outFile.write('\tif (isSet{0}() == true)\n'.format(strFunctions.cap(attributes[i]['name'])))
        outFile.write('\t{\n\t\t')
        outFile.write('m{0}->write(stream);'.format(strFunctions.cap(attributes[i]['name'])))
        outFile.write('\n\t}\n')
      if attributes[i]['type'] == 'lo_element':
        outFile.write('\tif (getNum{0}() > 0)\n'.format(strFunctions.capp(attributes[i]['name'])))
        outFile.write('\t{\n\t\t')
        outFile.write('m{0}.write(stream);'.format(strFunctions.capp(attributes[i]['name'])))
        outFile.write('\n\t}\n')
  if containsType(attributes, 'std::vector<double>'):
    vector = getByType(attributes, 'std::vector<double>')
    outFile.write('\tif(has{0}())\n'.format(strFunctions.capp(vector['name'])))
    outFile.write('\t{\n')
    outFile.write('\t\tfor (std::vector<double>::const_iterator it = m{0}.begin(); it != m{0}.end(); ++it)\n'.format(strFunctions.capp(vector['name'])))
    outFile.write('\t\t{\n')
    outFile.write('\t\t\tstream.startElement("{0}");\n'.format(vector['name']))
    outFile.write('\t\t\tstream.setAutoIndent(false);\n')
    outFile.write('\t\t\tstream << " " << *it << " ";\n')
    outFile.write('\t\t\tstream.endElement("{0}");\n'.format(vector['name']))
    outFile.write('\t\t\tstream.setAutoIndent(true);\n')
    outFile.write('\t\t}\n')
    outFile.write('\t}\n')
  if hasMath == True:
    for i in range(0, len(attributes)):
      if attributes[i]['type'] == 'element' and attributes[i]['name'] == 'Math' or attributes[i]['name'] == 'math':
        outFile.write('\tif (isSet{0}() == true)\n'.format('Math'))
        outFile.write('\t{\n\t\twriteMathML(getMath(), stream, NULL);\n\t}\n')
  outFile.write('}\n\n\n')
  writeInternalEnd(outFile)
def writeJavaExt(fileOut, name):
  capName = name.upper()
  fileOut.write('/**\n')
  fileOut.write(' * casting to most specific SBMLExtension object\n */\n\n')
  fileOut.write('#ifdef USE_{0}\n'.format(capName))
  fileOut.write('%pragma(java) modulecode =\n')
  fileOut.write('%{\n')
  fileOut.write('  if (pkgName.equals("{0}"))\n'.format(name))
  fileOut.write('  {\n')
  fileOut.write('    return new {0}Extension(cPtr, owner);\n'.format(strFunctions.cap(name)))
  fileOut.write('  }\n')
  fileOut.write('%}\n')
  fileOut.write('#endif // USE_{0}\n\n'.format(capName))
def writeCreateLOObject(fileOut, mem, ifCount):
  name = strFunctions.cap(mem['name'])
  if ifCount == 1:
    fileOut.write('    if (name == "listOf{0}s" ) \n'.format(name))
  else:
    fileOut.write('    else if (name == "listOf{0}s" ) \n'.format(name))
  fileOut.write('    { \n')
  fileOut.write('      object = &m{0}s;\n\n'.format(name))
  fileOut.write('      if (targetPrefix.empty() == true) \n')
  fileOut.write('      { \n')
  fileOut.write('        m{0}s.getSBMLDocument()->enableDefaultNS(mURI, true); \n'.format(name))
  fileOut.write('      } \n')
  fileOut.write('    } \n')
Beispiel #51
0
def writeClass(header, nameOfElement, typeOfElement, nameOfPackage, elementDict):
  header.write('class LIBSEDML_EXTERN {0} :'.format(generalFunctions.writeListOf(nameOfElement)))
  header.write(' public SedListOf\n{0}\n\n'.format('{'))
  header.write('public:\n\n')
  writeConstructors(nameOfElement, typeOfElement, nameOfPackage, header)
  writeGetFunctions(header, nameOfElement, typeOfElement)
  header.write('\t/**\n')
  header.write('\t * Adds a copy the given \"{0}\" to this {1}.\n'.format(nameOfElement, generalFunctions.writeListOf(nameOfElement)))
  header.write('\t *\n')
  header.write('\t * @param {0}; the {1} object to add\n'.format(strFunctions.objAbbrev(nameOfElement), nameOfElement))
  header.write('\t *\n')
  header.write('\t * @return integer value indicating success/failure of the\n')
  header.write('\t * function.  @if clike The value is drawn from the\n')
  header.write('\t * enumeration #OperationReturnValues_t. @endif The possible values\n')
  header.write('\t * returned by this function are:\n')
  header.write('\t * @li LIBSEDML_OPERATION_SUCCESS\n')
  header.write('\t * @li LIBSEDML_INVALID_ATTRIBUTE_VALUE\n')
  header.write('\t */\n')
  header.write('\tint add{0}(const {1}* {2});\n\n\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
  header.write('\t/**\n')
  header.write('\t * Get the number of {0} objects in this {1}.\n'.format(nameOfElement, generalFunctions.writeListOf(nameOfElement)))
  header.write('\t *\n')
  header.write('\t * @return the number of {0} objects in this {1}\n'.format(nameOfElement, generalFunctions.writeListOf(nameOfElement)))
  header.write('\t */\n')
  header.write('\tunsigned int getNum{0}s() const;\n\n\n'.format(nameOfElement))
  if elementDict.has_key('abstract') == False or (elementDict.has_key('abstract') and elementDict['abstract'] == False):
    header.write('\t/**\n')
    header.write('\t * Creates a new {0} object, adds it to the\n'.format(nameOfElement))
    header.write('\t * {0} and returns the {1} object created. \n'.format(generalFunctions.writeListOf(nameOfElement), nameOfElement))
    header.write('\t *\n')
    header.write('\t * @return a new {0} object instance\n'.format(nameOfElement))
    header.write('\t *\n')
    header.write('\t * @see add{0}(const {1}* {2})\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
    header.write('\t */\n')
    header.write('\t{0}* create{1}();\n\n\n'.format(typeOfElement, nameOfElement))
  elif elementDict.has_key('concrete'):
    for elem in elementDict['concrete']:
      header.write('\t/**\n')
      header.write('\t * Creates a new {0} object, adds it to the\n'.format(nameOfElement))
      header.write('\t * {0} and returns the {1} object created. \n'.format(generalFunctions.writeListOf(nameOfElement), nameOfElement))
      header.write('\t *\n')
      header.write('\t * @return a new {0} object instance\n'.format(nameOfElement))
      header.write('\t *\n')
      header.write('\t * @see add{0}(const {1}* {2})\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
      header.write('\t */\n')
      header.write('\t{0}* create{1}();\n\n\n'.format(elem['element'], strFunctions.cap(elem['name'])))
  writeRemoveFunctions(header, nameOfElement, typeOfElement)
  generalFunctions.writeCommonHeaders(header, nameOfElement, None, True)
  header.write('protected:\n\n')
  writeProtectedFunctions(header, nameOfElement, nameOfPackage)
  header.write('\n};\n\n')
Beispiel #52
0
def writeClass(header, nameOfElement, typeOfElement, nameOfPackage, elementDict):
  header.write('class LIBSEDML_EXTERN {0} :'.format(generalFunctions.writeListOf(nameOfElement)))
  header.write(' public SedListOf\n{0}\n\n'.format('{'))
  header.write('public:\n\n')
  writeConstructors(nameOfElement, typeOfElement, nameOfPackage, header)
  writeGetFunctions(header, nameOfElement, typeOfElement)
  header.write('  /**\n')
  header.write('   * Adds a copy the given \"{0}\" to this {1}.\n'.format(nameOfElement, generalFunctions.writeListOf(nameOfElement)))
  header.write('   *\n')
  header.write('   * @param {0}; the {1} object to add\n'.format(strFunctions.objAbbrev(nameOfElement), nameOfElement))
  header.write('   *\n')
  header.write('   * @return integer value indicating success/failure of the\n')
  header.write('   * function.  @if clike The value is drawn from the\n')
  header.write('   * enumeration #OperationReturnValues_t. @endif The possible values\n')
  header.write('   * returned by this function are:\n')
  header.write('   * @li LIBSEDML_OPERATION_SUCCESS\n')
  header.write('   * @li LIBSEDML_INVALID_ATTRIBUTE_VALUE\n')
  header.write('   */\n')
  header.write('  int add{0}(const {1}* {2});\n\n\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
  header.write('  /**\n')
  header.write('   * Get the number of {0} objects in this {1}.\n'.format(nameOfElement, generalFunctions.writeListOf(nameOfElement)))
  header.write('   *\n')
  header.write('   * @return the number of {0} objects in this {1}\n'.format(nameOfElement, generalFunctions.writeListOf(nameOfElement)))
  header.write('   */\n')
  header.write('  unsigned int getNum{0}s() const;\n\n\n'.format(nameOfElement))
  if elementDict.has_key('abstract') == False or (elementDict.has_key('abstract') and elementDict['abstract'] == False):
    header.write('  /**\n')
    header.write('   * Creates a new {0} object, adds it to the\n'.format(nameOfElement))
    header.write('   * {0} and returns the {1} object created.\n'.format(generalFunctions.writeListOf(nameOfElement), nameOfElement))
    header.write('   *\n')
    header.write('   * @return a new {0} object instance\n'.format(nameOfElement))
    header.write('   *\n')
    header.write('   * @see add{0}(const {1}* {2})\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
    header.write('   */\n')
    header.write('  {0}* create{1}();\n\n\n'.format(typeOfElement, nameOfElement))
  elif elementDict.has_key('concrete'):
    for elem in elementDict['concrete']:
      header.write('  /**\n')
      header.write('   * Creates a new {0} object, adds it to the\n'.format(nameOfElement))
      header.write('   * {0} and returns the {1} object created.\n'.format(generalFunctions.writeListOf(nameOfElement), nameOfElement))
      header.write('   *\n')
      header.write('   * @return a new {0} object instance\n'.format(nameOfElement))
      header.write('   *\n')
      header.write('   * @see add{0}(const {1}* {2})\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
      header.write('   */\n')
      header.write('  {0}* create{1}();\n\n\n'.format(elem['element'], strFunctions.cap(elem['name'])))
  writeRemoveFunctions(header, nameOfElement, typeOfElement)
  generalFunctions.writeCommonHeaders(header, nameOfElement, None, True)
  header.write('protected:\n\n')
  writeProtectedFunctions(header, nameOfElement, nameOfPackage)
  header.write('\n};\n\n')
Beispiel #53
0
def writeProtectedFunctions(output, element, package, name, elementDict):
  type = elementDict['name']
  elName = elementDict['name']
  if elementDict.has_key('elementName'):
    elName = strFunctions.cap(elementDict['elementName']) 
  if elementDict.has_key('element'):
    type = elementDict['element']

  listOf = generalFunctions.writeListOf(elName)
  generalFunctions.writeInternalStart(output)
  output.write('/*\n')
  output.write(' * Creates a new {0} in this {1}\n'.format(element, listOf))
  output.write(' */\n')
  output.write('SedBase*\n{0}::createObject(XMLInputStream& stream)\n'.format(listOf))
  output.write('{\n' )
  output.write('  const std::string& name   = stream.peek().getName();\n')
  output.write('  SedBase* object = NULL;\n\n')
  if elementDict == None or elementDict.has_key('abstract') == False or (elementDict.has_key('abstract') and elementDict['abstract'] == False):
    output.write('  if (name == "{0}")\n'.format(name))
    output.write('  {\n')
    output.write('    object = new {0}(getSedNamespaces());\n'.format(element))
    output.write('    appendAndOwn(object);\n  }\n\n')
  elif elementDict != None and elementDict.has_key('concrete'):
    for elem in elementDict['concrete']:
      output.write('  if (name == "{0}")\n'.format(elem['name']))
      output.write('  {\n')
      output.write('    object = new {0}(getSedNamespaces());\n'.format(elem['element']))
      output.write('    appendAndOwn(object);\n  }\n\n')
  output.write('  return object;\n')
  output.write('}\n\n\n')
  generalFunctions.writeInternalEnd(output)
  generalFunctions.writeInternalStart(output)
  output.write('/*\n')
  output.write(' * Write the namespace for the {0} package.\n'.format(package))
  output.write(' */\n')
  output.write('void\n{0}::writeXMLNS(XMLOutputStream& stream) const\n'.format(listOf))
  output.write('{\n' )
  output.write('  XMLNamespaces xmlns;\n\n')
  output.write('  std::string prefix = getPrefix();\n\n')
  output.write('  if (prefix.empty())\n')
  output.write('  {\n')
  output.write('    if (getNamespaces() != NULL && !getNamespaces()->hasURI(SEDML_XMLNS_L1) && !getNamespaces()->hasURI(SEDML_XMLNS_L1V2) && !getNamespaces()->hasURI(SEDML_XMLNS_L1V3))\n')
  output.write('    {\n')
  output.write('      if (getVersion() == 2) xmlns.add(SEDML_XMLNS_L1V2,prefix);\n')
  output.write('      else if (getVersion() == 3) xmlns.add(SEDML_XMLNS_L1V3,prefix);\n')
  output.write('      else xmlns.add(SEDML_XMLNS_L1V2,prefix);\n')
  output.write('    }\n')
  output.write('  }\n\n')
  output.write('  stream << xmlns;\n')
  output.write('}\n\n\n')
  generalFunctions.writeInternalEnd(output)
Beispiel #54
0
def writeWriteAttributesCPPCode(outFile, element, attribs, baseClass='SedBase'):
  writeInternalStart(outFile)
  outFile.write('/*\n')
  outFile.write(' * Write values of XMLAttributes to the output stream.\n')
  outFile.write(' */\n')
  outFile.write('\tvoid\n{0}::writeAttributes (XMLOutputStream& stream) const\n'.format(element))
  outFile.write('{\n')
  outFile.write('\t{0}::writeAttributes(stream);\n\n'.format(baseClass))
  for i in range (0, len(attribs)):
    if attribs[i]['type'] != 'element' and attribs[i]['type'] != 'lo_element':
      outFile.write('\tif (isSet{0}() == true)\n'.format(strFunctions.cap(attribs[i]['name'])))
      outFile.write('\t\tstream.writeAttribute("{0}", getPrefix(), m{1});\n\n'.format(attribs[i]['name'], strFunctions.cap(attribs[i]['name'])))	 
  outFile.write('}\n\n\n')
  writeInternalEnd(outFile)
Beispiel #55
0
def writeGetFunction(attrib, output, element):
  att = generalFunctions.parseAttributeForC(attrib)
  attName = att[0]
  capAttName = att[1]
  attType = att[2]
  if att[3] == 'const char *':
    attTypeCode = 'char *'
  else:
    attTypeCode = att[3]
  num = att[4]
  if attrib['type'] == 'std::vector<double>':
    return
  elif attrib['type'] != 'element' and attrib['type'] != 'lo_element' and attrib['type'] != 'XMLNode*':
    output.write('LIBSEDML_EXTERN\n')
    output.write('{0}\n'.format(attTypeCode))
    output.write('{0}_get{1}'.format(element, capAttName))
    output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
  elif attrib['type'] == 'XMLNode*':
    output.write('LIBSEDML_EXTERN\n')
    output.write('XMLNode_t*\n')
    output.write('{0}_get{1}'.format(element, capAttName))
    output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))    
  elif attrib['type'] == 'element':
    if attrib['name'] == 'Math' or attrib['name'] == 'math':
      output.write('LIBSEDML_EXTERN\n')
      output.write('ASTNode_t*\n')
      output.write('{0}_getMath'.format(element))
      output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
    else:
      output.write('LIBSEDML_EXTERN\n')
      output.write('{0}_t*\n'.format(strFunctions.cap(attrib['element'])))
      output.write('{0}_get{1}'.format(element, capAttName))
      output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
      output.write('LIBSEDML_EXTERN\n')
      output.write('{0}_t*\n'.format(strFunctions.cap(attrib['element'])))
      output.write('{0}_create{1}'.format(element, capAttName))
      output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
Beispiel #56
0
def writeListOfSubElements(attrib, output, element):
  loname = generalFunctions.writeListOf(strFunctions.cap(attrib['name']))
  output.write('LIBSEDML_EXTERN\n')
  output.write('int\n')
  output.write('{0}_add{1}({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
  output.write('{0}_t * {1});\n\n\n'.format(attrib['element'], strFunctions.objAbbrev(attrib['element'])))
  if attrib.has_key('abstract') == False or (attrib.has_key('abstract') and attrib['abstract'] == False):
    output.write('LIBSEDML_EXTERN\n')
    output.write('{0}_t *\n'.format(attrib['element']))
    output.write('{0}_create{1}({0}_t * {2}' .format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
    output.write(');\n\n\n')
  elif attrib.has_key('concrete'):
    for elem in attrib['concrete']:
      output.write('LIBSEDML_EXTERN\n')
      output.write('{0}_t *\n'.format(elem['element']))
      output.write('{0}_create{1}({0}_t * {2}' .format(element, strFunctions.cap(elem['name']), strFunctions.objAbbrev(element)))
      output.write(');\n\n\n')
  output.write('LIBSEDML_EXTERN\n')
  output.write('SedListOf_t *\n')
  output.write('{0}_get{1}({0}_t * {2})'.format(element, loname, strFunctions.objAbbrev(element)))
  output.write(';\n\n\n')
  output.write('LIBSEDML_EXTERN\n')
  output.write('{0}_t *\n'.format(attrib['element']))
  output.write('{0}_get{1}({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
  output.write('unsigned int n);\n\n\n')
  output.write('LIBSEDML_EXTERN\n')
  output.write('{0}_t *\n'.format(attrib['element']))
  output.write('{0}_get{1}ById({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
  output.write('const char * sid);\n\n\n')
  output.write('LIBSEDML_EXTERN\n')
  output.write('unsigned int\n')
  output.write('{0}_getNum{1}s({0}_t * {2}' .format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
  output.write(');\n\n\n')
  output.write('LIBSEDML_EXTERN\n')
  output.write('{0}_t *\n'.format(attrib['element']))
  output.write('{0}_remove{1}({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
  output.write('unsigned int n);\n\n\n')
  output.write('LIBSEDML_EXTERN\n')
  output.write('{0}_t *\n'.format(attrib['element']))
  output.write('{0}_remove{1}ById({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
  output.write('const char * sid);\n\n\n')
Beispiel #57
0
def writeGetElementNameCPPCode(outFile, element, isSedListOf=False, dict=None):
  outFile.write('/*\n')
  outFile.write(' * Returns the XML element name of this object\n')
  outFile.write(' */\n')
  outFile.write('const std::string&\n{0}::getElementName () const\n'.format(element))
  outFile.write('{\n')
  if dict != None and dict.has_key('elementName'):
    if isSedListOf:
      outFile.write('\tstatic const string name = "listOf{0}s";\n'.format(strFunctions.cap(dict['elementName'])))
    else:
      outFile.write('\tstatic const string name = "{0}";\n'.format(dict['elementName']))
  else:
    outFile.write('\tstatic const string name = "{0}";\n'.format(strFunctions.lowerFirst(element)))
  outFile.write('\treturn name;\n')
  outFile.write('}\n\n\n')
Beispiel #58
0
def createHeader(element, header):
    type = element["name"]
    name = element["name"]
    if element.has_key("elementName"):
        name = strFunctions.cap(element["elementName"])
    if element.has_key("element"):
        type = element["element"]

    writeConstructors(element["name"], element["package"], header)
    writeAttributeFunctions(element["attribs"], header, element["name"], element)
    writeHasReqdAttrFunction(header, element["name"])
    if element["hasChildren"] == True or element["hasMath"] == True:
        writeHasReqdElementsFunction(header, element["name"])
    if element["hasListOf"] == True:
        writeListOfHeaders(header, name, type, element)