class FastqcReportWriter(object):
def __init__(self, fastqc_summary, output_dir="./Fastqc_Writer_Report"):
self.fastqc_summary = fastqc_summary
self.file_manager = FastqcReportFileManager(output_dir)
def write_report_for_tag(self, tag):
file_path = self.file_manager.file_path_for_tag(tag)
html_string = self.fastqc_summary.get_html_for_tag(tag)
with open(file_path, "w") as html_file:
print(html_string, file=html_file)
print("Written: " + os.path.basename(file_path))
def write(self):
for tag in fastqc_report_tags():
self.write_report_for_tag(tag)
if __name__ == "__main__":
mateHandler = MateHandler()
dirInfos = [MateDirInfo(mate) for mate in mateHandler.list_project_mates()]
pairs = list(zip([dirInfo.first_fastqc_zip_path for dirInfo in dirInfos],
[dirInfo.second_fastqc_zip_path for dirInfo in dirInfos]))
fastqcSummary = PairedFastqcSummary(pairs)
writer = FastqcReportWriter(fastqcSummary, "TestData/FastqcSummary")
writer.write()
