def test_pubmed_obtain(self):
pubmedlist = [ b.pubmed_code for b in PubMedRef.objects.all() ]
for pdbent in self.subobj.pdbref_set.all():
if pdbent.pubmed_id != '':
p = PubMedRef( pubmed_code = pdbent.pubmed_id )
p.get_descriptors()
if p not in self.subobj.pubmedref_set.all():
p.save()
p.submission.add( self.subobj )
self.subobj.save()
for k in ('authors', 'title', 'journal', 'volume', 'year' ):
print p.pubmed_code, k, getattr( p, k )
def form_pubmed_ajax(request):
pubmedlist = [ b.pubmed_code.lower() for b in PubMedRef.objects.all() ]
if request.POST.has_key('client_response'):
client_response = request.POST['client_response'].lower()
if client_response in pubmedlist:
p = PubMedRef.objects.get( pubmed_code = client_response )
p.get_descriptors()
response_dict = { 'server_response' : p.title }
return HttpResponse(json.dumps( response_dict ))
else:
p = PubMedRef( pubmed_code = client_response )
p.get_descriptors()
p.save()
response_dict = { 'server_response' : p.title }
return HttpResponse(json.dumps( response_dict ))
else:
return render_to_response('subform/ftemp.html', context_instance=RequestContext(request))
def trialfirst( pmid ):
pubmedlist = [ b.pubmed_code.lower() for b in PubMedRef.objects.all() ]
subobj = get_object_or_404( Submission, pk = '1' )
owned_list = subobj.pubmedref_set.all()
ownobj = get_object_or_404( Owner, myt_id = '1' )
olist = [ b.pubmed_code.lower() for b in owned_list ]
client_response = '24519857'
if client_response in pubmedlist:
p = PubMedRef.objects.get( pubmed_code = client_response )
p.get_descriptors()
p.save()
response_dict = { 'server_response' : p.title }
if p.pubmed_code.lower() not in olist:
p.submission.add( subobj )
p.save()
subobj.save()
else:
#try: #try except handles incorrect pubmed codes
p = PubMedRef( pubmed_code = client_response )
p.get_descriptors()
p.save()
response_dict = { 'server_response' : p.title }
p.submission.add( subobj )
p.save()
subobj.save()
#except:
#pass
owned_list = subobj.pubmedref_set.all()
olist = [ b.pubmed_code.lower() for b in owned_list ]
outstr = ''
def refresh_pubmed_ajax(request, owner_id, sub_id ):
pubmedlist = [ b.pubmed_code.lower() for b in PubMedRef.objects.all() ]
subobj = get_object_or_404( Submission, pk = sub_id )
owned_list = subobj.pubmedref_set.all()
ownobj = get_object_or_404( Owner, myt_id = owner_id )
olist = [ b.pubmed_code.lower() for b in owned_list ]
if request.POST.has_key('client_response') and request.POST['client_response'].lower() != '':
client_response = request.POST['client_response'].lower()
if client_response in pubmedlist:
p = PubMedRef.objects.get( pubmed_code = client_response )
p.get_descriptors()
p.save()
response_dict = { 'server_response' : p.title }
if p.pubmed_code.lower() not in olist:
p.submission.add( subobj )
p.save()
subobj.save()
else:
try: #try except handles incorrect pubmed codes
p = PubMedRef( pubmed_code = client_response )
p.get_descriptors()
p.save()
response_dict = { 'server_response' : p.title }
p.submission.add( subobj )
p.save()
subobj.save()
except:
pass
owned_list = subobj.pubmedref_set.all()
olist = [ b.pubmed_code.lower() for b in owned_list ]
outstr = ''
for pmc in olist:
outstr += pmc + '<br>'
context = { 'submission' : subobj, 'owner' : ownobj }
return HttpResponse(render(request, 'subform/refresh_form_pubmed.html', context) )
else:
context = { 'submission' : subobj, 'owner' : ownobj }
return HttpResponse(render(request, 'subform/refresh_form_pubmed.html', context) )
