def get_summary_data( filename, whiskers, trajectories ):
if os.path.exists(filename):
data = numpy.load(filename)
else:
data = array(list( summary.features(whiskers) ))
numpy.save( filename, data )
return data
return summary.commit_traj_to_data_table( trajectories, data )
if not all( map( os.path.exists, args )):
raise IOError, "Could not find one or more input source files."
if all(map( lambda f: os.path.splitext(f)[-1] in ['.trajectories','.whiskers'], args )):
if len(args)==1:
src = args[0]
tfile = None
else:
src = args[1] #know the order b.c. already sorted by file extenstion
tfile = args[0]
w = trace.Load_Whiskers( src )
data = numpy.array(list( summary.features(w, options.face) ))
if tfile:
t,tid = load_trajectories( tfile )
summary.commit_traj_to_data_table( t, data )
elif all(map( lambda f: os.path.splitext(f)[-1] in ['.trajectories','.measurements'], args )):
sources = dict( map( lambda f: (os.path.splitext(f)[-1], f), args ) )
try:
data = traj.MeasurementsTable( sources['.measurements'] ).asarray()
except KeyError:
raise UserException, "A .measurements file must be provided as one of the source files."
try:
t,tid = load_trajectories( sources['.trajectories'] )
summary.commit_traj_to_data_table( t, data )
except KeyError:
pass
if all(
map(
lambda f: os.path.splitext(f)[-1] in
['.trajectories', '.whiskers'], args)):
if len(args) == 1:
src = args[0]
tfile = None
else:
src = args[
1] #know the order b.c. already sorted by file extenstion
tfile = args[0]
w = trace.Load_Whiskers(src)
data = numpy.array(list(summary.features(w, options.face)))
if tfile:
t, tid = load_trajectories(tfile)
summary.commit_traj_to_data_table(t, data)
elif all(
map(
lambda f: os.path.splitext(f)[-1] in
['.trajectories', '.measurements'], args)):
sources = dict(map(lambda f: (os.path.splitext(f)[-1], f), args))
try:
data = traj.MeasurementsTable(sources['.measurements']).asarray()
except KeyError:
raise UserException, "A .measurements file must be provided as one of the source files."
try:
t, tid = load_trajectories(sources['.trajectories'])
summary.commit_traj_to_data_table(t, data)
