def test_vectorize_units():
def test(x):
''' A function that will fail if called with an array '''
if x > 0:
return x * 2
else:
return x
# First run has no units
u = uc.UncertCalc(test, samples=1000)
u.set_input('x', nom=100, std=1)
u.calculate(gum=False)
assert np.isclose(u.out.mc.nom().magnitude, 200, atol=1)
assert str(u.out.mc._units[0]) == 'dimensionless'
# Now input has units but output units are not specified
u = uc.UncertCalc(test, samples=1000)
u.set_input('x', nom=100, std=1, units='cm')
u.calculate(gum=False)
assert np.isclose(u.out.mc.nom().magnitude, 200, atol=1)
assert str(u.out.mc._units[0]) == 'centimeter'
# Finally, request a unit conversion on the output
u = uc.UncertCalc(test, units='meter', samples=1000)
u.set_input('x', nom=100, std=1, units='cm')
u.calculate(gum=False)
assert np.isclose(u.out.mc.nom().magnitude, 2, atol=.1)
assert str(u.out.mc._units[0]) == 'meter'
def test_inductance():
''' Inductance calculation. Test wrapping callable with units '''
from scipy.special import ellipk, ellipe
def inductance_nagaoka(radius, length, N, mu0):
''' Calculate inductance using Nagaoka formula '''
k = numpy.sqrt(4 * radius**2 / (4 * radius**2 + length**2))
kprime = numpy.sqrt(1 - k**2)
Kk = ellipk(k**2)
Ek = ellipe(k**2)
kL = 4 / 3 / numpy.pi / kprime * ((kprime / k)**2 * (Kk - Ek) + Ek - k)
return mu0 * numpy.pi * N**2 * radius**2 / length * kL
u = uc.UncertCalc(
inductance_nagaoka,
units='uH',
finunits=['meter', 'meter', 'dimensionless', 'henry/meter'],
foutunits=['henry'])
u.set_input('radius', 2.7, units='mm', unc=.005, k=1)
u.set_input('length', 9, units='mm', unc=.01, k=1)
u.set_input('N', 100, units='dimensionless') # No uncertainty
u.set_input('mu0',
1.25663706212E-6,
unc=0.00000000019E-6,
units='H/m',
k=2)
u.calculate()
assert numpy.isclose(u.out.gum.nom().magnitude, 25.21506)
assert numpy.isclose(u.out.mc.nom().magnitude, 25.21506)
def test_units():
# Basic units propagation
u = uc.UncertCalc('J*V', units='mW', seed=12345)
u.set_input('J', nom=4, unc=.04, k=2, units='V')
u.set_input('V', nom=20, units='mA')
u.set_uncert('V', name='u(typeA)', std=.1, k=2)
u.set_uncert('V', name='u(typeB)', std=.15, k=2)
u.calculate()
assert str(u.out.gum._units[0]) == 'milliwatt'
assert np.isclose(u.out.gum.nom().magnitude, 80)
assert str(u.out.mc._units[0]) == 'milliwatt'
assert np.isclose(u.out.mc.nom().magnitude, 80)
assert str(u.out.mc.nom().units) == 'milliwatt'
assert 'mW' in str(u.out.gum.report())
assert 'mW' in str(u.out.gum.report_expanded())
assert 'mW' in str(u.out.mc.report())
assert 'mW' in str(u.out.mc.report_expanded())
# Change output to microwatts and recalculate
u.model.outunits = ['uW']
u.calculate()
assert str(u.out.gum._units[0]) == 'microwatt'
assert np.isclose(u.out.gum.nom().magnitude, 80000)
assert str(u.out.gum.nom().units) == 'microwatt'
assert str(u.out.mc._units[0]) == 'microwatt'
assert np.isclose(u.out.mc.nom().magnitude, 80000)
assert str(u.out.mc.nom().units) == 'microwatt'
def test_uc(capsys):
''' Test uncertainty calc '''
u = uc.UncertCalc('f = a * b + c', seed=4848484)
u.set_input('a', nom=10, std=1)
u.set_input('b', nom=5, dist='uniform', a=.5)
u.set_input('c', nom=3, unc=3, k=2)
u.correlate_vars('a', 'b', .6)
u.correlate_vars('c', 'b', -.3)
out = u.calculate()
report = out.report().get_md(mathfmt='text', figfmt='text')
cli.main_unc(['f=a*b+c', '--variables', 'a=10', 'b=5', 'c=3', '--uncerts', 'a; std=1', 'b; dist=uniform; a=.5', 'c; unc=3; k=2', '--correlate', 'a; b; .6', 'c; b; -.3', '--seed=4848484'])
report2, err = capsys.readouterr()
assert report == report2
# HTML format
reporthtml = out.report().get_html(mathfmt='latex', figfmt='svg')
cli.main_unc(['f=a*b+c', '--variables', 'a=10', 'b=5', 'c=3', '--uncerts', 'a; std=1', 'b; dist=uniform; a=.5', 'c; unc=3; k=2', '--correlate', 'a; b; .6', 'c; b; -.3', '-f', 'html', '--seed=4848484'])
report2html, err = capsys.readouterr()
assert reporthtml == report2html
# MD format
reportmd = out.report().get_md(mathfmt='latex', figfmt='svg')
cli.main_unc(['f=a*b+c', '--variables', 'a=10', 'b=5', 'c=3', '--uncerts', 'a; std=1', 'b; dist=uniform; a=.5', 'c; unc=3; k=2', '--correlate', 'a; b; .6', 'c; b; -.3', '-f', 'md', '--seed=4848484'])
report2md, err = capsys.readouterr()
assert reportmd == report2md
def test_projrem():
# Test add/remove items from project
u = suncal.UncertCalc('f = a*b', name='function1')
u2 = suncal.UncertCalc('g = c*d', name='function2')
proj = project.Project()
proj.add_item(u)
proj.add_item(u2)
assert proj.get_names() == ['function1', 'function2']
proj.rem_item(0)
assert proj.get_names() == ['function2']
proj = project.Project()
proj.add_item(u)
proj.add_item(u2)
proj.rem_item('function2')
assert proj.get_names() == ['function1']
def test_multifunc():
''' Test multiple functions in UncertCalc with different units '''
# Start without units -- convert all inputs to base units and *1000 to get milliwatt
u1 = uc.UncertCalc(['P = J*V*1000', 'R = V/J'], seed=398232)
u1.set_input('V', nom=10, std=.5)
u1.set_input('J', nom=5)
u1.set_uncert('J', name='u_A', std=.05) # 50 mA
u1.set_uncert('J', name='u_B', std=.01) # 1 mA = 10000 uA
u1.calculate()
meanP = u1.out.gum.nom('P').magnitude
uncertP = u1.out.gum.uncert('P').magnitude
meanR = u1.out.gum.nom('R').magnitude
uncertR = u1.out.gum.uncert('R').magnitude
# Now with units specified instead of converting first
u = uc.UncertCalc(['P = J*V', 'R = V/J'], units=['mW', 'ohm'], seed=398232)
u.set_input('V', nom=10, std=.5, units='V')
u.set_input('J', nom=5, units='ampere')
u.set_uncert('J', name='u_A', std=50, units='mA') # Uncert not same units as variable
u.set_uncert('J', name='u_B', std=10000, units='uA')
u.calculate()
# And compare.
assert np.isclose(u.out.gum.nom('P').magnitude, meanP)
assert np.isclose(u.out.gum.uncert('P').magnitude, uncertP)
assert str(u.out.gum.nom('P').units) == 'milliwatt'
assert np.isclose(u.out.mc.nom('P').magnitude, meanP, rtol=.0001)
assert np.isclose(u.out.mc.uncert('P').magnitude, uncertP, rtol=.001)
assert str(u.out.mc.nom('P').units) == 'milliwatt'
assert np.isclose(u.out.mc.nom('R').magnitude, meanR, rtol=.0001)
assert np.isclose(u.out.mc.uncert('R').magnitude, uncertR, rtol=.001)
assert str(u.out.mc.nom('R').units) == 'ohm'
assert np.isclose(u.out.mc.nom('R').magnitude, meanR, rtol=.0001)
assert np.isclose(u.out.mc.uncert('R').magnitude, uncertR, rtol=.001)
assert str(u.out.mc.nom('R').units) == 'ohm'
def test_power():
''' Test case for powers of dimensionless quantities '''
# See https://github.com/hgrecco/pint/issues/670
# Make sure we have a workaround since this inconsistency was closed without a fix
# with x = np.arange(5) * ureg.dimensionless
# np.exp(x) --> returns dimensionless array
# 2**x --> raises DimensionalityError
u = uc.UncertCalc('f = 2**x')
u.seed = 8833293
u.set_input('x', nom=4, std=.1) # No units / dimensionless
u.calculate()
assert u.out.mc.uncert().units == ureg.dimensionless
assert np.isclose(u.out.mc.nom().magnitude, 16.0, rtol=.01)
assert np.isclose(u.out.mc.uncert().magnitude, u.out.gum.uncert().magnitude, rtol=.02)
def test_savesamples(tmpdir):
''' Test savesamples function, in txt and npz formats. '''
np.random.seed(1111)
u = uc.UncertCalc('f=a+b', units='meter', samples=20)
u.set_input('a', nom=10, std=.1, units='cm')
u.set_input('b', nom=20, std=.2, units='mm')
u.calculate()
sfile = os.path.join(tmpdir, 'samples.txt')
nfile = os.path.join(tmpdir, 'samples.npz')
u.save_samples(sfile, fmt='csv')
u.save_samples(nfile, fmt='npz')
# Load in and compare (only comparing output column here)
loadedsamples = np.genfromtxt(sfile, skip_header=1)
assert np.allclose(loadedsamples[:, 2], u.out.mc.samples('f').magnitude)
loadednpz = np.load(nfile)
assert np.allclose(loadednpz['samples'][:, 2],
u.out.mc.samples('f').magnitude)
def test_saveload_fname(tmpdir):
# Set up a Project with all types of calculations. Save it to a file (both using file NAME
# and file OBJECT, read back the results, and compare the output report.
# Make sure to store seeds for everything that does MC.
np.random.seed(588132535)
# Set up several project components of the different types
u = suncal.UncertCalc('f = m/(pi*r**2)', seed=44444)
u.set_input('m', nom=2, std=.2)
u.set_input('r', nom=1, std=.1)
u2 = suncal.UncertCalc('g = m * 5', seed=4444)
u2.set_input('m', nom=5, std=.5)
rsk = risk.Risk()
rsk.set_procdist(distributions.get_distribution('t', loc=.5, scale=1,
df=9))
swp = sweeper.UncertSweep(u)
swp.add_sweep_nom('m', values=[.5, 1, 1.5, 2])
x = np.linspace(-10, 10, num=21)
y = x * 2 + np.random.normal(loc=0, scale=.5, size=len(x))
arr = curvefit.Array(x, y, uy=0.5)
fit = curvefit.CurveFit(arr, seed=909090)
rev = reverse.UncertReverse('f = m/(pi*r**2)',
seed=5555,
targetnom=20,
targetunc=.5,
solvefor='m')
rev.set_input('r', nom=5, std=.05)
revswp = sweeper.UncertSweepReverse(rev)
revswp.add_sweep_unc('r',
values=[.01, .02, .03, .04],
comp='u(r)',
param='std')
explore = dist_explore.DistExplore(seed=8888)
explore.dists = {
'a': distributions.get_distribution('normal', loc=3, scale=2),
'b': distributions.get_distribution('uniform', loc=0, scale=2),
'a+b': None
}
explore.get_config()
dset = dataset.DataSet()
dset.set_data(
np.vstack((np.repeat(np.arange(5),
5), np.random.normal(loc=10, scale=1,
size=25))).transpose())
proj = project.Project()
proj.add_item(u)
proj.add_item(u2)
proj.add_item(rsk)
proj.add_item(swp)
proj.add_item(fit)
proj.add_item(rev)
proj.add_item(revswp)
proj.add_item(explore)
proj.add_item(dset)
reportorig = proj.calculate()
# Save_config given file NAME
outfile = tmpdir.join('projconfig.yaml')
proj.save_config(outfile)
# Save_config given file OBJECT
outfileobj = StringIO()
proj.save_config(outfileobj)
outfileobj.seek(0)
proj2 = project.Project.from_configfile(outfile)
reportnew = proj2.calculate()
assert str(reportorig) == str(reportnew)
proj3 = project.Project.from_configfile(outfileobj)
reportobj = proj3.calculate()
assert str(reportorig) == str(reportobj)
outfileobj.close()
