def test_solar_semidiameter_angular_size():
assert_quantity_allclose(sun.solar_semidiameter_angular_size("2012/11/11"),
968.604 * u.arcsec,
atol=1e-3 * u.arcsec)
assert_quantity_allclose(sun.solar_semidiameter_angular_size("2043/03/01"),
968.059 * u.arcsec,
atol=1e-3 * u.arcsec)
assert_quantity_allclose(sun.solar_semidiameter_angular_size("2001/07/21"),
943.778 * u.arcsec,
atol=1e-3 * u.arcsec)
def test_solar_semidiameter_angular_size():
assert_quantity_allclose(sun.solar_semidiameter_angular_size("2012/11/11"),
968.871294 * u.arcsec,
atol=1e-3 * u.arcsec)
assert_quantity_allclose(sun.solar_semidiameter_angular_size("2043/03/01"),
968.326347 * u.arcsec,
atol=1e-3 * u.arcsec)
assert_quantity_allclose(sun.solar_semidiameter_angular_size("2001/07/21"),
944.039007 * u.arcsec,
atol=1e-3 * u.arcsec)
def rsun_arcseconds(self):
"""Radius of the sun in arcseconds"""
rsun_arcseconds = self.meta.get('rsun_obs',
self.meta.get('solar_r',
self.meta.get('radius', None)))
if rsun_arcseconds is None:
warnings.warn_explicit("Missing metadata for solar radius: assuming photospheric limb as seen from Earth",
Warning, __file__, inspect.currentframe().f_back.f_lineno)
rsun_arcseconds = sun.solar_semidiameter_angular_size(self.date).value
return rsun_arcseconds
def rsun_obs(self):
"""Radius of the Sun."""
rsun_arcseconds = self.meta.get("rsun_obs", self.meta.get("solar_r", self.meta.get("radius", None)))
if rsun_arcseconds is None:
warnings.warn_explicit(
"Missing metadata for solar radius: assuming photospheric limb as seen from Earth",
Warning,
__file__,
inspect.currentframe().f_back.f_lineno,
)
rsun_arcseconds = sun.solar_semidiameter_angular_size(self.date).to("arcsec").value
return u.Quantity(rsun_arcseconds, "arcsec")
def _dsunAtSoho(date, rad_d, rad_1au = None):
"""Determines the distance to the Sun from SOhO following
d_{\sun,Object} =
D_{\sun\earth} \frac{\tan(radius_{1au}[rad])}{\tan(radius_{d}[rad])}
though tan x ~ x for x << 1
d_{\sun,Object} =
D_{\sun\eart} \frac{radius_{1au}[rad]}{radius_{d}[rad]}
since radius_{1au} and radius_{d} are dividing each other we can use [arcsec]
instead.
---
TODO: Does this apply just to observations on the same Earth-Sun line?
If not it can be moved outside here.
"""
if not rad_1au:
rad_1au = sun.solar_semidiameter_angular_size(date)
return sun.sunearth_distance(date) * constants.au * (rad_1au / rad_d)
def _dsunAtSoho(date, rad_d, rad_1au=None):
"""Determines the distance to the Sun from SOhO following
d_{\sun,Object} =
D_{\sun\earth} \frac{\tan(radius_{1au}[rad])}{\tan(radius_{d}[rad])}
though tan x ~ x for x << 1
d_{\sun,Object} =
D_{\sun\eart} \frac{radius_{1au}[rad]}{radius_{d}[rad]}
since radius_{1au} and radius_{d} are dividing each other we can use [arcsec]
instead.
---
TODO: Does this apply just to observations on the same Earth-Sun line?
If not it can be moved outside here.
"""
if not rad_1au:
rad_1au = sun.solar_semidiameter_angular_size(date)
dsun = sun.sunearth_distance(date) * constants.au * (rad_1au / rad_d)
# return scalar value not astropy.quantity
return dsun.value
def test_rsun_missing():
"""Tests output if 'rsun' is missing"""
euvi_no_rsun = Map(fitspath)
euvi_no_rsun.meta['rsun'] = None
assert euvi_no_rsun.rsun_obs.value == sun.solar_semidiameter_angular_size(euvi.date).to('arcsec').value
def backprojection(calibrated_event_list, pixel_size=(1., 1.) * u.arcsec,
image_dim=(64, 64) * u.pix):
"""
Given a stacked calibrated event list fits file create a back
projection image.
.. warning:: The image is not in the right orientation!
Parameters
----------
calibrated_event_list : string
filename of a RHESSI calibrated event list
pixel_size : `~astropy.units.Quantity` instance
the size of the pixels in arcseconds. Default is (1,1).
image_dim : `~astropy.units.Quantity` instance
the size of the output image in number of pixels
Returns
-------
out : RHESSImap
Return a backprojection map.
Examples
--------
This example is broken.
>>> import sunpy.data
>>> import sunpy.data.sample # doctest: +SKIP
>>> import sunpy.instr.rhessi as rhessi
>>> map = rhessi.backprojection(sunpy.data.sample.RHESSI_IMAGE) # doctest: +SKIP
>>> map.peek() # doctest: +SKIP
"""
pixel_size = pixel_size.to(u.arcsec)
image_dim = np.array(image_dim.to(u.pix).value, dtype=int)
afits = sunpy.io.read_file(calibrated_event_list)
info_parameters = afits[2]
xyoffset = info_parameters.data.field('USED_XYOFFSET')[0]
time_range = TimeRange(info_parameters.data.field('ABSOLUTE_TIME_RANGE')[0])
image = np.zeros(image_dim)
# find out what detectors were used
det_index_mask = afits[1].data.field('det_index_mask')[0]
detector_list = (np.arange(9)+1) * np.array(det_index_mask)
for detector in detector_list:
if detector > 0:
image = image + _backproject(calibrated_event_list, detector=detector,
pixel_size=pixel_size.value, image_dim=image_dim)
dict_header = {
"DATE-OBS": time_range.center.strftime("%Y-%m-%d %H:%M:%S"),
"CDELT1": pixel_size[0],
"NAXIS1": image_dim[0],
"CRVAL1": xyoffset[0],
"CRPIX1": image_dim[0]/2 + 0.5,
"CUNIT1": "arcsec",
"CTYPE1": "HPLN-TAN",
"CDELT2": pixel_size[1],
"NAXIS2": image_dim[1],
"CRVAL2": xyoffset[1],
"CRPIX2": image_dim[0]/2 + 0.5,
"CUNIT2": "arcsec",
"CTYPE2": "HPLT-TAN",
"HGLT_OBS": 0,
"HGLN_OBS": 0,
"RSUN_OBS": solar_semidiameter_angular_size(time_range.center).value,
"RSUN_REF": sunpy.sun.constants.radius.value,
"DSUN_OBS": get_sunearth_distance(time_range.center).value * sunpy.sun.constants.au.value
}
result_map = sunpy.map.Map(image, dict_header)
return result_map
def backprojection(calibrated_event_list, pixel_size: u.arcsec=(1., 1.) * u.arcsec,
image_dim: u.pix=(64, 64) * u.pix):
"""
Given a stacked calibrated event list fits file create a back
projection image.
.. warning:: The image is not in the right orientation!
Parameters
----------
calibrated_event_list : str
filename of a RHESSI calibrated event list
pixel_size : `~astropy.units.Quantity` instance
the size of the pixels in arcseconds. Default is (1,1).
image_dim : `~astropy.units.Quantity` instance
the size of the output image in number of pixels
Returns
-------
out : RHESSImap
Return a backprojection map.
Examples
--------
This example is broken.
>>> import sunpy.data
>>> import sunpy.data.sample # doctest: +REMOTE_DATA
>>> import sunpy.instr.rhessi as rhessi
>>> map = rhessi.backprojection(sunpy.data.sample.RHESSI_EVENT_LIST) # doctest: +SKIP
>>> map.peek() # doctest: +SKIP
"""
# import sunpy.map in here so that net and timeseries don't end up importing map
import sunpy.map
pixel_size = pixel_size.to(u.arcsec)
image_dim = np.array(image_dim.to(u.pix).value, dtype=int)
afits = sunpy.io.read_file(calibrated_event_list)
info_parameters = afits[2]
xyoffset = info_parameters.data.field('USED_XYOFFSET')[0]
time_range = TimeRange(info_parameters.data.field('ABSOLUTE_TIME_RANGE')[0], format='utime')
image = np.zeros(image_dim)
# find out what detectors were used
det_index_mask = afits[1].data.field('det_index_mask')[0]
detector_list = (np.arange(9)+1) * np.array(det_index_mask)
for detector in detector_list:
if detector > 0:
image = image + _backproject(calibrated_event_list, detector=detector,
pixel_size=pixel_size.value, image_dim=image_dim)
dict_header = {
"DATE-OBS": time_range.center.strftime("%Y-%m-%d %H:%M:%S"),
"CDELT1": pixel_size[0],
"NAXIS1": image_dim[0],
"CRVAL1": xyoffset[0],
"CRPIX1": image_dim[0]/2 + 0.5,
"CUNIT1": "arcsec",
"CTYPE1": "HPLN-TAN",
"CDELT2": pixel_size[1],
"NAXIS2": image_dim[1],
"CRVAL2": xyoffset[1],
"CRPIX2": image_dim[0]/2 + 0.5,
"CUNIT2": "arcsec",
"CTYPE2": "HPLT-TAN",
"HGLT_OBS": 0,
"HGLN_OBS": 0,
"RSUN_OBS": solar_semidiameter_angular_size(time_range.center).value,
"RSUN_REF": sunpy.sun.constants.radius.value,
"DSUN_OBS": get_sunearth_distance(time_range.center).value * sunpy.sun.constants.au.value
}
result_map = sunpy.map.Map(image, dict_header)
return result_map
def backprojection(calibrated_event_list, pixel_size=(1.,1.), image_dim=(64,64)):
"""Given a stacked calibrated event list fits file create a back
projection image.
.. warning:: The image is not in the right orientation!
Parameters
----------
calibrated_event_list : string
filename of a RHESSI calibrated event list
detector : int
the detector number
pixel_size : 2-tuple
the size of the pixels in arcseconds. Default is (1,1).
image_dim : 2-tuple
the size of the output image in number of pixels
Returns
-------
out : RHESSImap
Return a backprojection map.
Examples
--------
>>> import sunpy.instr.rhessi as rhessi
>>> map = rhessi.backprojection(sunpy.RHESSI_EVENT_LIST)
>>> map.show()
"""
calibrated_event_list = sunpy.RHESSI_EVENT_LIST
fits = pyfits.open(calibrated_event_list)
info_parameters = fits[2]
xyoffset = info_parameters.data.field('USED_XYOFFSET')[0]
time_range = TimeRange(info_parameters.data.field('ABSOLUTE_TIME_RANGE')[0])
image = np.zeros(image_dim)
#find out what detectors were used
det_index_mask = fits[1].data.field('det_index_mask')[0]
detector_list = (np.arange(9)+1) * np.array(det_index_mask)
for detector in detector_list:
if detector > 0:
image = image + _backproject(calibrated_event_list, detector=detector, pixel_size=pixel_size, image_dim=image_dim)
dict_header = {
"DATE-OBS": time_range.center().strftime("%Y-%m-%d %H:%M:%S"),
"CDELT1": pixel_size[0],
"NAXIS1": image_dim[0],
"CRVAL1": xyoffset[0],
"CRPIX1": image_dim[0]/2 + 0.5,
"CUNIT1": "arcsec",
"CTYPE1": "HPLN-TAN",
"CDELT2": pixel_size[1],
"NAXIS2": image_dim[1],
"CRVAL2": xyoffset[1],
"CRPIX2": image_dim[0]/2 + 0.5,
"CUNIT2": "arcsec",
"CTYPE2": "HPLT-TAN",
"HGLT_OBS": 0,
"HGLN_OBS": 0,
"RSUN_OBS": solar_semidiameter_angular_size(time_range.center()),
"RSUN_REF": sun.radius,
"DSUN_OBS": sunearth_distance(time_range.center()) * sunpy.sun.constants.au
}
header = sunpy.map.MapHeader(dict_header)
result_map = sunpy.map.Map(image, header)
return result_map
def backprojection(calibrated_event_list,
pixel_size=(1., 1.) * u.arcsec,
image_dim=(64, 64) * u.pix):
"""
Given a stacked calibrated event list fits file create a back
projection image.
.. warning:: The image is not in the right orientation!
Parameters
----------
calibrated_event_list : string
filename of a RHESSI calibrated event list
pixel_size : `~astropy.units.Quantity` instance
the size of the pixels in arcseconds. Default is (1,1).
image_dim : `~astropy.units.Quantity` instance
the size of the output image in number of pixels
Returns
-------
out : RHESSImap
Return a backprojection map.
Examples
--------
>>> import sunpy.data
>>> import sunpy.data.sample
>>> import sunpy.instr.rhessi as rhessi
>>> sunpy.data.download_sample_data(overwrite=False) # doctest: +SKIP
>>> map = rhessi.backprojection(sunpy.data.sample.RHESSI_EVENT_LIST) # doctest: +SKIP
>>> map.peek() # doctest: +SKIP
"""
if not isinstance(pixel_size, u.Quantity):
raise ValueError("Must be astropy Quantity in arcseconds")
try:
pixel_size = pixel_size.to(u.arcsec)
except:
raise ValueError("'{0}' is not a valid pixel_size unit".format(
pixel_size.unit))
if not (isinstance(image_dim, u.Quantity) and image_dim.unit == 'pix'):
raise ValueError("Must be astropy Quantity in pixels")
try:
import sunpy.data.sample
except ImportError:
import sunpy.data
sunpy.data.download_sample()
# This may need to be moved up to data from sample
calibrated_event_list = sunpy.data.sample.RHESSI_EVENT_LIST
afits = fits.open(calibrated_event_list)
info_parameters = afits[2]
xyoffset = info_parameters.data.field('USED_XYOFFSET')[0]
time_range = TimeRange(
info_parameters.data.field('ABSOLUTE_TIME_RANGE')[0])
image = np.zeros(image_dim.value)
# find out what detectors were used
det_index_mask = afits[1].data.field('det_index_mask')[0]
detector_list = (np.arange(9) + 1) * np.array(det_index_mask)
for detector in detector_list:
if detector > 0:
image = image + _backproject(calibrated_event_list,
detector=detector,
pixel_size=pixel_size.value,
image_dim=image_dim.value)
dict_header = {
"DATE-OBS":
time_range.center().strftime("%Y-%m-%d %H:%M:%S"),
"CDELT1":
pixel_size[0],
"NAXIS1":
image_dim[0],
"CRVAL1":
xyoffset[0],
"CRPIX1":
image_dim[0].value / 2 + 0.5,
"CUNIT1":
"arcsec",
"CTYPE1":
"HPLN-TAN",
"CDELT2":
pixel_size[1],
"NAXIS2":
image_dim[1],
"CRVAL2":
xyoffset[1],
"CRPIX2":
image_dim[0].value / 2 + 0.5,
"CUNIT2":
"arcsec",
"CTYPE2":
"HPLT-TAN",
"HGLT_OBS":
0,
"HGLN_OBS":
0,
"RSUN_OBS":
solar_semidiameter_angular_size(time_range.center()).value,
"RSUN_REF":
sunpy.sun.constants.radius.value,
"DSUN_OBS":
sunearth_distance(time_range.center()) * sunpy.sun.constants.au.value
}
header = sunpy.map.MapMeta(dict_header)
result_map = sunpy.map.Map(image, header)
return result_map
def backprojection(calibrated_event_list,
pixel_size=(1., 1.),
image_dim=(64, 64)):
"""
Given a stacked calibrated event list fits file create a back
projection image.
.. warning:: The image is not in the right orientation!
Parameters
----------
calibrated_event_list : string
filename of a RHESSI calibrated event list
detector : int
the detector number
pixel_size : 2-tuple
the size of the pixels in arcseconds. Default is (1,1).
image_dim : 2-tuple
the size of the output image in number of pixels
Returns
-------
out : RHESSImap
Return a backprojection map.
Examples
--------
>>> import sunpy.instr.rhessi as rhessi
>>> map = rhessi.backprojection(sunpy.RHESSI_EVENT_LIST)
>>> map.show()
"""
calibrated_event_list = sunpy.RHESSI_EVENT_LIST
afits = fits.open(calibrated_event_list)
info_parameters = afits[2]
xyoffset = info_parameters.data.field('USED_XYOFFSET')[0]
time_range = TimeRange(
info_parameters.data.field('ABSOLUTE_TIME_RANGE')[0])
image = np.zeros(image_dim)
#find out what detectors were used
det_index_mask = afits[1].data.field('det_index_mask')[0]
detector_list = (np.arange(9) + 1) * np.array(det_index_mask)
for detector in detector_list:
if detector > 0:
image = image + _backproject(calibrated_event_list,
detector=detector,
pixel_size=pixel_size,
image_dim=image_dim)
dict_header = {
"DATE-OBS": time_range.center().strftime("%Y-%m-%d %H:%M:%S"),
"CDELT1": pixel_size[0],
"NAXIS1": image_dim[0],
"CRVAL1": xyoffset[0],
"CRPIX1": image_dim[0] / 2 + 0.5,
"CUNIT1": "arcsec",
"CTYPE1": "HPLN-TAN",
"CDELT2": pixel_size[1],
"NAXIS2": image_dim[1],
"CRVAL2": xyoffset[1],
"CRPIX2": image_dim[0] / 2 + 0.5,
"CUNIT2": "arcsec",
"CTYPE2": "HPLT-TAN",
"HGLT_OBS": 0,
"HGLN_OBS": 0,
"RSUN_OBS": solar_semidiameter_angular_size(time_range.center()),
"RSUN_REF": sun.radius,
"DSUN_OBS":
sunearth_distance(time_range.center()) * sunpy.sun.constants.au
}
header = sunpy.map.MapHeader(dict_header)
result_map = sunpy.map.Map(image, header)
return result_map
def backprojection(calibrated_event_list, pixel_size=(1.,1.) * u.arcsec, image_dim=(64,64) * u.pix):
"""
Given a stacked calibrated event list fits file create a back
projection image.
.. warning:: The image is not in the right orientation!
Parameters
----------
calibrated_event_list : string
filename of a RHESSI calibrated event list
detector : int
the detector number
pixel_size : `~astropy.units.Quantity` instance
the size of the pixels in arcseconds. Default is (1,1).
image_dim : `~astropy.units.Quantity` instance
the size of the output image in number of pixels
Returns
-------
out : RHESSImap
Return a backprojection map.
Examples
--------
>>> import sunpy.instr.rhessi as rhessi
>>> map = rhessi.backprojection(sunpy.RHESSI_EVENT_LIST)
>>> map.peek()
"""
if not isinstance(pixel_size, u.Quantity):
raise ValueError("Must be astropy Quantity in arcseconds")
try:
pixel_size = pixel_size.to(u.arcsec)
except:
raise ValueError("'{0}' is not a valid pixel_size unit".format(pixel_size.unit))
if not (isinstance(image_dim, u.Quantity) and image_dim.unit == 'pix'):
raise ValueError("Must be astropy Quantity in pixels")
calibrated_event_list = sunpy.RHESSI_EVENT_LIST
afits = fits.open(calibrated_event_list)
info_parameters = afits[2]
xyoffset = info_parameters.data.field('USED_XYOFFSET')[0]
time_range = TimeRange(info_parameters.data.field('ABSOLUTE_TIME_RANGE')[0])
image = np.zeros(image_dim.value)
#find out what detectors were used
det_index_mask = afits[1].data.field('det_index_mask')[0]
detector_list = (np.arange(9)+1) * np.array(det_index_mask)
for detector in detector_list:
if detector > 0:
image = image + _backproject(calibrated_event_list, detector=detector, pixel_size=pixel_size.value
, image_dim=image_dim.value)
dict_header = {
"DATE-OBS": time_range.center().strftime("%Y-%m-%d %H:%M:%S"),
"CDELT1": pixel_size[0],
"NAXIS1": image_dim[0],
"CRVAL1": xyoffset[0],
"CRPIX1": image_dim[0].value/2 + 0.5,
"CUNIT1": "arcsec",
"CTYPE1": "HPLN-TAN",
"CDELT2": pixel_size[1],
"NAXIS2": image_dim[1],
"CRVAL2": xyoffset[1],
"CRPIX2": image_dim[0].value/2 + 0.5,
"CUNIT2": "arcsec",
"CTYPE2": "HPLT-TAN",
"HGLT_OBS": 0,
"HGLN_OBS": 0,
"RSUN_OBS": solar_semidiameter_angular_size(time_range.center()).value,
"RSUN_REF": sunpy.sun.constants.radius.value,
"DSUN_OBS": sunearth_distance(time_range.center()) * sunpy.sun.constants.au.value
}
header = sunpy.map.MapMeta(dict_header)
result_map = sunpy.map.Map(image, header)
return result_map
def test_rsun_missing():
"""Tests output if 'rsun' is missing"""
euvi_no_rsun = Map(fitspath)
euvi_no_rsun.meta['rsun'] = None
assert euvi_no_rsun.rsun_obs.value == sun.solar_semidiameter_angular_size(
euvi.date).to('arcsec').value
def test_solar_semidiameter_angular_size():
assert_array_almost_equal(sun.solar_semidiameter_angular_size("2012/11/11"), 968.383 * u.arcsec, decimal=3)
assert_array_almost_equal(sun.solar_semidiameter_angular_size("2043/03/01"), 968.274 * u.arcsec, decimal=3)
assert_array_almost_equal(sun.solar_semidiameter_angular_size("2001/07/21"), 943.706 * u.arcsec, decimal=3)
def test_solar_semidiameter_angular_size():
assert_quantity_allclose(sun.solar_semidiameter_angular_size("2012/11/11"), 968.604 * u.arcsec, atol=1e-3 * u.arcsec)
assert_quantity_allclose(sun.solar_semidiameter_angular_size("2043/03/01"), 968.059 * u.arcsec, atol=1e-3 * u.arcsec)
assert_quantity_allclose(sun.solar_semidiameter_angular_size("2001/07/21"), 943.778 * u.arcsec, atol=1e-3 * u.arcsec)
def test_solar_semidiameter_angular_size():
assert_quantity_allclose(sun.solar_semidiameter_angular_size("2012/11/11"), 968.871294 * u.arcsec, atol=1e-3 * u.arcsec)
assert_quantity_allclose(sun.solar_semidiameter_angular_size("2043/03/01"), 968.326347 * u.arcsec, atol=1e-3 * u.arcsec)
assert_quantity_allclose(sun.solar_semidiameter_angular_size("2001/07/21"), 944.039007 * u.arcsec, atol=1e-3 * u.arcsec)