Python bedgraph_to_array Beispiele

Beispiel #1

Datei: test_bedgraph.py Projekt: tacorna/taco

def c_write_and_read_array(a, ref='chr1', start=0):
    filename = "tmp.bedgraph"
    with open(filename, 'w') as fileh:
        c_array_to_bedgraph(a, ref, start, fileh)
    a = bedgraph_to_array(open(filename))
    os.remove(filename)
    return a.get(ref, None)

Beispiel #2

def c_write_and_read_array(a, ref='chr1', start=0):
    filename = "tmp.bedgraph"
    with open(filename, 'w') as fileh:
        c_array_to_bedgraph(a, ref, start, fileh)
    a = bedgraph_to_array(open(filename))
    os.remove(filename)
    return a.get(ref, None)

Beispiel #3

Datei: test_bedgraph.py Projekt: tacorna/taco

def write_and_read_array(a, ref='chr1', start=0):
    buf = cStringIO.StringIO()
    array_to_bedgraph(a, ref, start, buf)
    contents = buf.getvalue()
    a = bedgraph_to_array(cStringIO.StringIO(contents))
    return a.get(ref, None)

Beispiel #4

def write_and_read_array(a, ref='chr1', start=0):
    buf = cStringIO.StringIO()
    array_to_bedgraph(a, ref, start, buf)
    contents = buf.getvalue()
    a = bedgraph_to_array(cStringIO.StringIO(contents))
    return a.get(ref, None)