def test_blastn_db_build(self):
commonInputDir = util.file.get_test_input_path()
refFasta = os.path.join(commonInputDir, 'ebola.fasta')
myInputDir = util.file.get_test_input_path(self)
tempDir = tempfile.mkdtemp()
output_prefix = self.__class__.__name__
args = taxon_filter.parser_blastn_build_db(argparse.ArgumentParser()).parse_args(
[
# input fasta
refFasta,
# output directory
tempDir,
"--outputFilePrefix",
output_prefix
]
)
args.func_main(args)
# nhr=header. nin=index, nsq=sequence
for ext in [".nhr", ".nsq"]: # ".nin" can change
assert_equal_contents(
self, os.path.join(tempDir, output_prefix + ext),
os.path.join(myInputDir, "expected", output_prefix + ext)
)
def test_blastn_db_build(self):
commonInputDir = util.file.get_test_input_path()
refFasta = os.path.join(commonInputDir, 'ebola.fasta')
myInputDir = util.file.get_test_input_path(self)
tempDir = tempfile.mkdtemp()
output_prefix = self.__class__.__name__
args = taxon_filter.parser_blastn_build_db(
argparse.ArgumentParser()).parse_args([
# input fasta
refFasta,
# output directory
tempDir,
"--outputFilePrefix",
output_prefix
])
args.func_main(args)
# nhr=header. nin=index, nsq=sequence
for ext in [".nhr", ".nsq"]: # ".nin" can change
assert_equal_contents(
self, os.path.join(tempDir, output_prefix + ext),
os.path.join(myInputDir, "expected", output_prefix + ext))