def test_roadrunner(self):
# load test model as SBML
sbml = te.getTestModel('feedback.xml')
rr = te.loadSBMLModel(sbml)
# simulate
s = rr.simulate(0, 100.0, 200)
rr.plot(s)
self.assertIsNotNone(rr)
self.assertIsNotNone(s)
self.assertEqual(s.shape[0], 200)
self.assertEqual(s["time"][0], 0)
self.assertAlmostEqual(s["time"][-1], 100.0)
def test_roadrunner(self):
# load test model as SBML
sbml = te.getTestModel('feedback.xml')
rr = te.loadSBMLModel(sbml)
# simulate
s = rr.simulate(0, 100.0, 200)
rr.plot(s)
self.assertIsNotNone(rr)
self.assertIsNotNone(s)
self.assertEqual(s.shape[0], 200)
self.assertEqual(s["time"][0], 0)
self.assertAlmostEqual(s["time"][-1], 100.0)
# coding: utf-8
# Back to the main [Index](../index.ipynb)
# ### Test models
# In[1]:
#!!! DO NOT CHANGE !!! THIS FILE WAS CREATED AUTOMATICALLY FROM NOTEBOOKS !!! CHANGES WILL BE OVERWRITTEN !!! CHANGE CORRESPONDING NOTEBOOK FILE !!!
from __future__ import print_function
import tellurium as te
# To get the builtin models use listTestModels
print(te.listTestModels())
# #### Load test model
# In[2]:
# To load one of the test models use loadTestModel:
# r = te.loadTestModel('feedback.xml')
# result = r.simulate (0, 10, 100)
# r.plot (result)
# If you need to obtain the SBML for the test model, use getTestModel
sbml = te.getTestModel('feedback.xml')
# To look at one of the test model in Antimony form:
ant = te.sbmlToAntimony(te.getTestModel('feedback.xml'))
print(ant)
def test_getTestModel(self):
sbml = te.getTestModel('feedback.xml')
def test_getTestModel(self):
sbml = te.getTestModel('feedback.xml')
self.assertIsNotNone(sbml)
# Back to the main [Index](../index.ipynb)
# ### Test models
# In[1]:
#!!! DO NOT CHANGE !!! THIS FILE WAS CREATED AUTOMATICALLY FROM NOTEBOOKS !!! CHANGES WILL BE OVERWRITTEN !!! CHANGE CORRESPONDING NOTEBOOK FILE !!!
from __future__ import print_function
import tellurium as te
# To get the builtin models use listTestModels
print(te.listTestModels())
# #### Load test model
# In[2]:
# To load one of the test models use loadTestModel:
# r = te.loadTestModel('feedback.xml')
# result = r.simulate (0, 10, 100)
# r.plot (result)
# If you need to obtain the SBML for the test model, use getTestModel
sbml = te.getTestModel('feedback.xml')
# To look at one of the test model in Antimony form:
ant = te.sbmlToAntimony(te.getTestModel('feedback.xml'))
print(ant)
def test_getTestModel(self):
sbml = te.getTestModel('feedback.xml')
self.assertIsNotNone(sbml)
def test_getTestModel(self):
sbml = te.getTestModel('feedback.xml')