Beispiel #1
0
 def setUp(self):
     self.refseq = "MAIVMGR*KGAR*"
     self.fasta = "test.fa"
     self.refid = "test"
     test.createFasta(self.fasta,self.refid,self.refseq)
     self.intermediate = "intermediate"
     os.mkdir(self.intermediate)
     self.evalue = 1
Beispiel #2
0
 def setUp(self):
     self.refseq = "AGCTGGCGGCGCGAGGAAGAGGAACGTAGCTGGCGGCGCGAGGAAGAGGAACGT"
     self.fasta = "test.fa"
     self.refid = "test"
     test.createFasta(self.fasta,self.refid,self.refseq)
     self.intermediate = "intermediate"
     os.mkdir(self.intermediate)
     self.evalue = 1
Beispiel #3
0
 def setUp(self):
     self.proseq = "MAIVMGR*KGAR*"
     self.nucseq = "ATGGCCATTGTAATGGGCCGCTGAAAGGGTGCCCGATAG"
     self.nucfasta = "nuctest.fa"
     self.profasta = "protest.fa"
     self.refid = "test"
     test.createFasta(self.nucfasta,self.refid,self.nucseq)
     test.createFasta(self.profasta,self.refid,self.proseq)
     self.intermediate = "intermediate"
     os.mkdir(self.intermediate)
     self.evalue = 1
Beispiel #4
0
        def setUp(self):
            self.refseq = "MAIVMGR*KGAR*"
            self.fasta = "test.fa"
            self.refid = "test:1-10+|locus:2-5+"
            test.createFasta(self.fasta,self.refid,self.refseq)

            self.fasta1 = "test1.fa"
            self.refid = "test:1-10+|locus:2-5+"
            test.createFasta(self.fasta1,self.refid,self.refseq)

            self.intermediate = "intermediate"
            os.mkdir(self.intermediate)
            self.evalue = 1