def setUp(self):
self.refseq = "MAIVMGR*KGAR*"
self.fasta = "test.fa"
self.refid = "test"
test.createFasta(self.fasta,self.refid,self.refseq)
self.intermediate = "intermediate"
os.mkdir(self.intermediate)
self.evalue = 1
def setUp(self):
self.refseq = "AGCTGGCGGCGCGAGGAAGAGGAACGTAGCTGGCGGCGCGAGGAAGAGGAACGT"
self.fasta = "test.fa"
self.refid = "test"
test.createFasta(self.fasta,self.refid,self.refseq)
self.intermediate = "intermediate"
os.mkdir(self.intermediate)
self.evalue = 1
def setUp(self):
self.proseq = "MAIVMGR*KGAR*"
self.nucseq = "ATGGCCATTGTAATGGGCCGCTGAAAGGGTGCCCGATAG"
self.nucfasta = "nuctest.fa"
self.profasta = "protest.fa"
self.refid = "test"
test.createFasta(self.nucfasta,self.refid,self.nucseq)
test.createFasta(self.profasta,self.refid,self.proseq)
self.intermediate = "intermediate"
os.mkdir(self.intermediate)
self.evalue = 1
def setUp(self):
self.refseq = "MAIVMGR*KGAR*"
self.fasta = "test.fa"
self.refid = "test:1-10+|locus:2-5+"
test.createFasta(self.fasta,self.refid,self.refseq)
self.fasta1 = "test1.fa"
self.refid = "test:1-10+|locus:2-5+"
test.createFasta(self.fasta1,self.refid,self.refseq)
self.intermediate = "intermediate"
os.mkdir(self.intermediate)
self.evalue = 1