def reset(self):
BaseTool.reset(self)
self.__single_stock_rack_map = {}
self.__prep_plate_map = {}
self.__ssc_layout_map = {}
self.__empty_stock_rack_positions_map = {}
self.__stock_trf_exc_wl_map = None
def reset(self):
BaseTool.reset(self)
self.__pool_stock_rack_buffer_volume = None
self.__tube_rack_map = {}
self.__source_rack_locations = {}
self.__single_stock_rack_map = {}
self.__pool_stock_rack_map = None
def reset(self):
BaseTool.reset(self)
self.__pool_stock_rack_buffer_volume = None
self.__tube_rack_map = {}
self.__source_rack_locations = {}
self.__single_stock_rack_map = {}
self.__pool_stock_rack_map = None
def reset(self):
"""
Resets all values except for the initialisation values.
"""
BaseTool.reset(self)
self.__design_series = None
self.__rack_worklists = None
def reset(self):
"""
Resets all values except for the input values.
"""
BaseTool.reset(self)
self._planned_liquid_transfers = []
self._label = None
def reset(self):
BaseTool.reset(self)
self.__base_layout = None
self.__pool_set = None
self.__worklist_series = None
self.__stock_concentration = None
self.__number_plates = None
def reset(self):
"""
Resets all values except for the initialisation values.
"""
BaseTool.reset(self)
self.__design_series = None
self.__rack_worklists = None
def reset(self):
"""
Resets all values except for the input values.
"""
BaseTool.reset(self)
self._planned_liquid_transfers = []
self._label = None
def reset(self):
BaseTool.reset(self)
self.__base_layout = None
self.__pool_set = None
self.__worklist_series = None
self.__stock_concentration = None
self.__number_plates = None
def reset(self):
BaseTool.reset(self)
self.__single_stock_rack_map = {}
self.__prep_plate_map = {}
self.__ssc_layout_map = {}
self.__empty_stock_rack_positions_map = {}
self.__stock_trf_exc_wl_map = None
def reset(self):
BaseTool.reset(self)
self.__library_candidates = {}
self.__md_map = dict()
self.__picked_candidates = []
self.__stock_samples = []
self.__single_pool_map = dict()
self.__multi_pool_iso_candidates = dict()
def reset(self):
"""
Resets all attributes except for the user input.
"""
BaseTool.reset(self)
self.__stream = None
self._column_map_list = None
self._index_map = None
def reset(self):
"""
Resets all attributes except for the :attr:`experiment_design`.
"""
BaseTool.reset(self)
self.__experiment_layouts = dict()
self.__placeholder_maps = dict()
self.__iso_layout = None
def reset(self):
"""
Resets all attributes except for the user input.
"""
BaseTool.reset(self)
self.__stream = None
self._column_map_list = None
self._index_map = None
def reset(self):
"""
Resets all attributes except for the :attr:`experiment_design`.
"""
BaseTool.reset(self)
self.__experiment_layouts = dict()
self.__placeholder_maps = dict()
self.__iso_layout = None
def reset(self):
BaseTool.reset(self)
self.__pool_set = None
self.__number_designs = None
self.__stock_concentration = None
self.__adj_target_volume = None
self.__worklist_series = None
self.__expected_number_isos = None
def reset(self):
BaseTool.reset(self)
self.__ticket_number = None
self.__series_map = dict()
self.__worklist_counter = 0
self.__ordered_plate_markers = []
self.__series_keys = dict()
self.__process_job_first = None
def reset(self):
BaseTool.reset(self)
self.__pool_set = None
self.__number_designs = None
self.__stock_concentration = None
self.__adj_target_volume = None
self.__worklist_series = None
self.__expected_number_isos = None
def reset(self):
BaseTool.reset(self)
self.__ticket_number = None
self.__series_map = dict()
self.__worklist_counter = 0
self.__ordered_plate_markers = []
self.__series_keys = dict()
self.__process_job_first = None
def reset(self):
"""
Resets all attributes except for the :attr:`rack_layout`.
"""
BaseTool.reset(self)
self.__position_map = dict()
self._parameter_validators = None
self._optional_parameters = set()
self._multiple_tags = []
def reset(self):
"""
Resets all values except the initialisation values.
"""
BaseTool.reset(self)
self._sector_concentrations = None
self._associated_sectors = []
self.__sector_set_hashes = dict()
self.__sector_set_positions = dict()
def reset(self):
BaseTool.reset(self)
self.__library_layout = None
self.__library_sectors = None
self.__sample_stock_racks = dict()
self.__stock_rack_map = dict()
self.__library_source_plates = dict()
self.__stock_transfer_worklists = dict()
self.__transfer_jobs = dict()
self.__rack_transfer_indices = dict()
self.__ignore_positions_96 = dict()
def reset(self):
BaseTool.reset(self)
self._source_layout = None
self._hash_values = set()
self._column_maps = dict()
self.__source_rack_shape = None
self.__trg_min_row_distance = None
self.__src_min_row_distance = None
self.__subcolumn_tids = dict()
self.__subcolumn_lengths = dict()
self.__free_positions = None
def reset(self):
BaseTool.reset(self)
self.__library_layout = None
self.__library_sectors = None
self.__sample_stock_racks = dict()
self.__stock_rack_map = dict()
self.__library_source_plates = dict()
self.__stock_transfer_worklists = dict()
self.__transfer_jobs = dict()
self.__rack_transfer_indices = dict()
self.__ignore_positions_96 = dict()
def reset(self):
BaseTool.reset(self)
self._iso_request = None
self._barcode_map = dict()
self._processing_order = None
self._plate_layouts = dict()
self.__final_plate_count = 0
self._stock_tube_containers = dict()
self._rack_containers = dict()
self._stock_rack_layouts = dict()
self.__stock_transfer_series = dict()
def reset(self):
BaseTool.reset(self)
self._iso_request = None
self._barcode_map = dict()
self._processing_order = None
self._plate_layouts = dict()
self.__final_plate_count = 0
self._stock_tube_containers = dict()
self._rack_containers = dict()
self._stock_rack_layouts = dict()
self.__stock_transfer_series = dict()
def reset(self):
BaseTool.reset(self)
self.library_name = None
self.layout_number = None
self.__rack_map = dict()
self.__library_layout = None
self.__library_sectors = None
self.__translated_sectors = dict()
self.__tube_map = dict()
self.__tube_transfers = dict()
self.__file_map = dict()
self.__source_rack_locations = dict()
def reset(self):
BaseTool.reset(self)
self._iso_request = None
self._queued_pools = []
self.__stock_concentration = None
self.__worklist_series = None
self.__base_layout = None
self._quadrant_positions = dict()
self._library_candidates = None
self._library_layouts = []
self.__picked_isos = []
self.__new_isos = []
def reset(self):
BaseTool.reset(self)
self._iso_request = None
self._queued_pools = []
self.__stock_concentration = None
self.__worklist_series = None
self.__base_layout = None
self._quadrant_positions = dict()
self._library_candidates = None
self._library_layouts = []
self.__picked_isos = []
self.__new_isos = []
def reset(self):
BaseTool.reset(self)
self.library_name = None
self.layout_number = None
self.__rack_map = dict()
self.__library_layout = None
self.__library_sectors = None
self.__translated_sectors = dict()
self.__tube_map = dict()
self.__tube_transfers = dict()
self.__file_map = dict()
self.__source_rack_locations = dict()
def reset(self):
"""
Resets all values except for initialisation values.
"""
BaseTool.reset(self)
self.__file_layouts = dict()
self.__db_layouts = dict()
self.__racks = dict()
self.__tubes = dict()
self.__overview_stream = None
self.__tube_transfers = []
self.__tube_transfer_worklist = None
self.__max_age = None
self.__now = None
self.__differences = []
def reset(self):
"""
Resets all values except for initialisation values.
"""
BaseTool.reset(self)
self.__file_layouts = dict()
self.__db_layouts = dict()
self.__racks = dict()
self.__tubes = dict()
self.__overview_stream = None
self.__tube_transfers = []
self.__tube_transfer_worklist = None
self.__max_age = None
self.__now = None
self.__differences = []
def reset(self):
"""
Resets all attributes except for instantiation arguments.
"""
BaseTool.reset(self)
self.was_successful = False
def reset(self):
"""
Resets all attributes except for the initialization values.
"""
BaseTool.reset(self)
self.__wiki_table = None
def reset(self):
BaseTool.reset(self)
self.__worklist_series = WorklistSeries()
def reset(self):
BaseTool.reset(self)
self._transfer_jobs = dict()
self._rack_transfer_worklists = dict()
self.__rack_transfer_indices = set()
def reset(self):
"""
Resets all attributes except for initialisation values.
"""
BaseTool.reset(self)
self._barcode_map = dict()
def reset(self):
BaseTool.reset(self)
self.__worklist_series = WorklistSeries()
def reset(self):
BaseTool.reset(self)
self._experiment_type = None
def reset(self):
BaseTool.reset(self)
self.__worklist_series = None
self.__last_worklist_index = 0
self.__sector_layouts = dict()
def reset(self):
"""
Resets all attributes except for initialisation values.
"""
BaseTool.reset(self)
self._barcode_map = dict()
def reset(self):
BaseTool.reset(self)
self.__rack_containers = dict()
def reset(self):
BaseTool.reset(self)
self.__iso_request = None
self.__new_iso_counter = 0
def reset(self):
BaseTool.reset(self)
self.__tube_transfers = None
self.__tube_transfer_worklist = None
self.__timestamp = None
def reset(self):
BaseTool.reset(self)
self._transfer_jobs = dict()
self._rack_transfer_worklists = dict()
self.__rack_transfer_indices = set()
def reset(self):
BaseTool.reset(self)
self.__worklist_series = None
self.__last_worklist_index = 0
self.__sector_layouts = dict()
def reset(self):
BaseTool.reset(self)
self._isos = None
self._iso_job = None
def reset(self):
BaseTool.reset(self)
self.__tube_transfers = None
self.__tube_transfer_worklist = None
self.__timestamp = None
def reset(self):
BaseTool.reset(self)
self.__worklist_series = None
self.__last_worklist_index = -1
self.__quadrant_layouts = dict()
self.__stock_to_prep_vol = None
def reset(self):
"""
Resets the initialisation values.
"""
BaseTool.reset(self)
self.__sectors = dict()
def reset(self):
BaseTool.reset(self)
self.__rack_containers = dict()
def reset(self):
BaseTool.reset(self)
self.__new_iso_counter = 0
def reset(self):
BaseTool.reset(self)
self.__new_iso_counter = 0
def reset(self):
BaseTool.reset(self)
self._isos = None
self._iso_job = None