def _verify_stock_racks(self):
"""
Checks the samples in the stock racks (pools and samples).
"""
self.add_debug('Verify stock racks ..')
for stock_rack in self._stock_racks.values():
verifier = StockRackVerifier(stock_rack, parent=self)
compatible = verifier.get_result()
rack_name = '%s (%s)' % (stock_rack.rack.barcode, stock_rack.label)
if compatible is None:
msg = 'Error when trying to verify stock rack %s.' % (
rack_name)
self.add_error(msg)
elif not compatible:
msg = 'Stock rack %s does not match the expected layout.' \
% (rack_name)
self.add_error(msg)
else:
layout = verifier.get_expected_layout()
barcode = stock_rack.rack.barcode
self.__stock_rack_layouts[barcode] = layout
if not self.has_errors():
self._check_for_previous_execution()
def _verify_stock_racks(self):
"""
We convert the layouts separately because the layout have different
types. Also the pool stock rack is checked separately because the
referring tubes must all be empty.
"""
self.__verify_pool_stock_rack()
num_stock_racks = len(self.entity.iso_stock_racks)
incompatible = []
for isr in self.entity.iso_stock_racks:
layout = None
kw = dict(rack_layout=isr.rack_layout, parent=self)
rack_name = "%s (%s)" % (isr.rack.barcode, isr.label)
if isr.label == self.__pool_stock_rack.label:
continue # has been checked separately
elif num_stock_racks == 2:
converter_cls = SingleDesignStockRackLayoutConverter
else:
converter_cls = StockRackLayoutConverter
converter = converter_cls(**kw)
layout = converter.get_result()
if layout is None:
msg = "Error when trying to convert stock rack layout for " "rack %s!" % (rack_name)
self.add_error(msg)
else:
verifier = StockRackVerifier(isr, stock_rack_layout=layout, parent=self)
compatible = verifier.get_result()
if compatible is None:
msg = "Error when trying to verify stock rack %s." % (rack_name)
self.add_error(msg)
elif not compatible:
incompatible.append(rack_name)
if len(incompatible) > 0:
msg = "The following stock racks are not compatible: %s." % (self._get_joined_str(incompatible))
self.add_error(msg)
def _verify_stock_racks(self):
"""
We convert the layouts separately because the layout have different
types. Also the pool stock rack is checked separately because the
referring tubes must all be empty.
"""
self.__verify_pool_stock_rack()
num_stock_racks = len(self.entity.iso_stock_racks)
incompatible = []
for isr in self.entity.iso_stock_racks:
layout = None
kw = dict(rack_layout=isr.rack_layout, parent=self)
rack_name = '%s (%s)' % (isr.rack.barcode, isr.label)
if isr.label == self.__pool_stock_rack.label:
continue # has been checked separately
elif num_stock_racks == 2:
converter_cls = SingleDesignStockRackLayoutConverter
else:
converter_cls = StockRackLayoutConverter
converter = converter_cls(**kw)
layout = converter.get_result()
if layout is None:
msg = 'Error when trying to convert stock rack layout for ' \
'rack %s!' % (rack_name)
self.add_error(msg)
else:
verifier = StockRackVerifier(isr,
stock_rack_layout=layout,
parent=self)
compatible = verifier.get_result()
if compatible is None:
msg = 'Error when trying to verify stock rack %s.' \
% (rack_name)
self.add_error(msg)
elif not compatible:
incompatible.append(rack_name)
if len(incompatible) > 0:
msg = 'The following stock racks are not compatible: %s.' \
% (self._get_joined_str(incompatible))
self.add_error(msg)
def _verify_stock_racks(self):
"""
Checks the samples in the stock racks (pools and samples).
"""
self.add_debug('Verify stock racks ..')
for stock_rack in self._stock_racks.values():
verifier = StockRackVerifier(stock_rack, parent=self)
compatible = verifier.get_result()
rack_name = '%s (%s)' % (stock_rack.rack.barcode, stock_rack.label)
if compatible is None:
msg = 'Error when trying to verify stock rack %s.' % (rack_name)
self.add_error(msg)
elif not compatible:
msg = 'Stock rack %s does not match the expected layout.' \
% (rack_name)
self.add_error(msg)
else:
layout = verifier.get_expected_layout()
barcode = stock_rack.rack.barcode
self.__stock_rack_layouts[barcode] = layout
if not self.has_errors():
self._check_for_previous_execution()
