def get(b, d, n):
    """Get the results for the given parameters"""
    print("Running with: B = " + str(b) + " D = " + str(d) + " N = " + str(n))
    nn = int(n * (n + 1) / 2)

    cd(b, d, n)

    E, eigenvectors, index, c_max, H = \
        eigensystem.get(return_eigv=True, return_index=True,
                        return_cmax=True, return_H=True)

    # All available colors
    colors = ('black', 'red', 'teal', 'blue', 'orange', 'olive', 'magenta',
              'cyan', 'Brown', 'Goldenrod', 'Green', 'Violet')

    ir_reps, colormap = eigensystem.levels(E, index[c_max], colors=colors)

    # Build eigenvalue string
    # If the colormap element corresponding to the i-th eigenvalue is empty,
    # skip adding \color
    eigenvalues = ', '.join(
        optional_color(format_float(E[i]), colormap[i]) for i in range(E.size))

    return nn, H, E, eigenvalues, eigenvectors, index, c_max, ir_reps, \
        colors, colormap
Beispiel #2
0
def main(B, D, N, max_energy=[0], energy_plot=False, small_plot=False):
    figsize = (5.8, 4) if not small_plot else (5.8, 3.5)
    fig, ax = plt.subplots(figsize=figsize)
    d = D[0]
    # alpha
    msize = 8
    reps = 'reuna', 'reuns', 'rebde'
    for r in reps:
        values = []
        for n_i in N:
            for max_e in max_energy:
                for b_i in B:
                    cd(b_i, d, n_i)
                    rep = np.loadtxt(r + '.dat', usecols=(0,))
                    files = find('alpha*.txt', '.')
                    for f in files:
                        regex = r"""alpha_max_e_([0-9]+)"""
                        f_max_e = re.compile(regex).search(f)
                        if f_max_e:
                            f_max_e = float(f_max_e.group(1))
                        else:
                            f_max_e = 0
                        if max_e == f_max_e:
                            print(max_e, f_max_e, f)
                            values.append([np.asscalar(np.loadtxt(f)),
                                compute_eta(rep[rep < max_e] if max_e else rep)])
        ax.scatter(np.array(values)[:, 0], np.array(values)[:, 1])


    ax.set_xlabel('$\\alpha$')
    ax.set_ylabel('$\\eta$')
    fig.savefig('../../Statistics/correlation_B[' +
                ', '.join('{:.2}' for i in B).format(*B) +
                ']_N' + str(N) + '.pdf', dpi=400)
Beispiel #3
0
def main(a, b, d, n):
    n = int(n)
    cd(b, d, n)
    nn = int(n * (n + 1) / 2)
    H = np.empty((nn, nn))

    index = [(n1, n2) for n1 in range(n) for n2 in range(n - n1)]

    np.seterr(over='raise')
    start = timer()
    # Compute the Hamiltonian matrix elements
    for i in range(H.shape[0]):
        for j in range(H.shape[1]):
            m1 = index[i][0]
            m2 = index[i][1]
            n1 = index[j][0]
            n2 = index[j][1]
            H[i][j] = a * (elem(m1, n1, 1, 1) * elem(m2, n2, 0, 0) +
                           elem(m1, n1, 0, 0) * elem(m2, n2, 1, 1)) \
                + 0.25 * b * (3 * elem(m1, n1, 1, 0) * elem(m2, n2, 2, 0)
                              + 3 * elem(m1, n1, 0, 1) * elem(m2, n2, 0, 2)
                              - elem(m1, n1, 3, 0) * elem(m2, n2, 0, 0)
                              - elem(m1, n1, 0, 3) * elem(m2, n2, 0, 0)) \
                + 0.75 * b * (elem(m1, n1, 0, 1) * elem(m2, n2, 2, 0)
                              + elem(m1, n1, 1, 0) * elem(m2, n2, 0, 2)
                              - elem(m1, n1, 1, 2) * elem(m2, n2, 0, 0)
                              - elem(m1, n1, 2, 1) * elem(m2, n2, 0, 0)
                              + 2 * elem(m1, n1, 0, 1) * elem(m2, n2, 1, 1)
                              + 2 * elem(m1, n1, 1, 0) * elem(m2, n2, 1, 1)) \
                + 0.375 * d * (elem(m1, n1, 2, 2) * elem(m2, n2, 0, 0)
                               + elem(m1, n1, 0, 0) * elem(m2, n2, 2, 2)) \
                + 0.125 * d * (elem(m1, n1, 2, 0) * elem(m2, n2, 0, 2)
                               + elem(m1, n1, 0, 2) * elem(m2, n2, 2, 0)) \
                + 0.500 * d * elem(m1, n1, 1, 1) * elem(m2, n2, 1, 1) \
                + 0.250 * d * (elem(m1, n1, 1, 3) * elem(m2, n2, 0, 0)
                               + elem(m1, n1, 3, 1) * elem(m2, n2, 0, 0)
                               + elem(m1, n1, 0, 0) * elem(m2, n2, 1, 3)
                               + elem(m1, n1, 0, 0) * elem(m2, n2, 3, 1)
                               + elem(m1, n1, 0, 2) * elem(m2, n2, 1, 1)
                               + elem(m1, n1, 2, 0) * elem(m2, n2, 1, 1)
                               + elem(m1, n1, 1, 1) * elem(m2, n2, 0, 2)
                               + elem(m1, n1, 1, 1) * elem(m2, n2, 2, 0)) \
                + 0.0625 * d * (elem(m1, n1, 4, 0) * elem(m2, n2, 0, 0)
                                + elem(m1, n1, 0, 4) * elem(m2, n2, 0, 0)
                                + elem(m1, n1, 0, 0) * elem(m2, n2, 4, 0)
                                + elem(m1, n1, 0, 0) * elem(m2, n2, 0, 4)
                                + 2 * elem(m1, n1, 2, 0) * elem(m2, n2, 2, 0)
                                + 2 * elem(m1, n1, 0, 2) * elem(m2, n2, 0, 2))

    end = timer()
    print('hamilt: ', end - start)
    np.savez_compressed('hamilt.npz', H=H)
    return H
Beispiel #4
0
def main(b, d, n, delta_n, st_epsilon, lvl_epsilon, cut=0):
    print("Running with: B = " + str(b) + " D = " + str(d) + " N = " + str(n))
    cd(b, d, n)
    start = timer()
    E, ket = eigensystem.get(return_ket=True)
    # Select irreducible representations
    # ir_reps = eigensystem.levels(E, ket)

    # Select only the stable levels
    # stable_levels = diff.stable(E, ir_reps, b, d, n, delta_n)
    stable_levels = diff.stable(E, b, d, n, delta_n, st_epsilon)
    # Reduce the number of stable levels to check the convergence
    stable_levels = int((1 - cut) * stable_levels)
    E = E[:stable_levels]
    # Select irreducible representations
    ir_reps = eigensystem.levels(E, ket, lvl_epsilon)

    stop = timer()
    print('Get data:', stop - start, 'seconds')
    rebde = open('rebde.dat', 'w')
    reuna = open('reuna.dat', 'w')
    reuns = open('reuns.dat', 'w')

    # Write only one level corresponding to the bidimensional representation
    skip_next = False
    for i in range(E.size):
        n1 = ket[i][0]
        n2 = ket[i][1]
        if ir_reps[i] == 2:  # bidimensional representation (rebde)
            if not skip_next:
                rebde.write('{0:.18f}'.format(E[i]) + '\t' + str(n1) + '\t' +
                            str(n2) + '\n')
                skip_next = True
            else:
                skip_next = False
        else:
            if n2 % 2:  # unidimensional anti-symmetric representation
                reuna.write('{0:.18f}'.format(E[i]) + '\t' + str(n1) + '\t' +
                            str(n2) + '\n')
            else:  # unidimensional symmetric representation
                reuns.write('{0:.18f}'.format(E[i]) + '\t' + str(n1) + '\t' +
                            str(n2) + '\n')

    rebde.close()
    reuna.close()
    reuns.close()

    os.chdir("../../Scripts")
    print("Done\n")
 def save(self):
     tls.cd(self.name)
     np.save(name+'shape',self.shape)
     np.save(name+'ul',self.ul)
     np.save(name+'beta',self.beta)
     np.save(name+'gamma',self.gamma)
     np.save(name+'T',self.T)
     np.save(name+'Dt',self.Dt)
     np.save(name+'eps_static',self.eps_static)
     np.save(name+'S',self.S)
     np.save(name+'r',self.r)
     np.save(name+'eps',self.eps)
     np.save(name+'alpha',self.alpha)
     np.save(name+'ND',self.ND)
     np.save(name+'ND0',self.ND0)
     np.save(name+'n',self.n)
 def get_zipfile(self, cr, uid, ids, context=None):
     zfilecontent = ''
     if isinstance(ids, (int, long)):
         ids = [ids]
     product = self.browse(cr, uid, ids[0], context)
     zfilename = '%s_%s.zip' % (product.name, uuid.uuid4())
     with cd(path.join(product.repository_id._parent_path, product.repository_id.relpath)):
         dirpath = path.join(os.getcwd(), product.name)
         if path.isdir(dirpath):
             with ZipFile(zfilename, 'w') as zfile:
                 zipdir(path.relpath(dirpath), zfile)
             with open(zfilename, 'rb') as zfile:
                 zfilecontent = zfile.read().encode('base64')
             product.write({'zipfile': zfilecontent, 'zipfilename': '%s.zip' % product.name})
     return {
         'name': _('Download zip'),
         'type': 'ir.actions.act_window',
         'view_type': 'form',
         'view_mode': 'form',
         'res_model': 'product.product',
         'res_id': product.id,
         'view_id': self.pool.get('ir.model.data').get_object_reference(cr, uid, 'smile_module_repository',
                                                                        'view_product_product_form2')[1],
         'target': 'new',
         'context': context,
     }
Beispiel #7
0
def main(b, d, n):
    """Create bar plots for eigenvectors"""
    cd(b, d, n)
    # Get states
    E, eigenvectors, ket, index = \
        eigensystem.get(return_eigv=True, return_ket=True,
                        return_index=True)
    # Get the index array that sorts the eigenvector coefficients
    # such that n1 + n2 is increasing
    sort_idx = np.argsort(index.sum(axis=1))
    # Sort the eigenvector coefficients
    eigenvectors = eigenvectors[:, sort_idx]
    # stable_levels = np.load('cache.npy')    # get cached stable levels
    no_eigv = 40  # number of eigenvectors to plot
    # Select the states corresponding to stable levels
    E = E[:no_eigv]
    eigenvectors = eigenvectors[:no_eigv]
    ket = ket[:no_eigv]
    # Get irreducible representation index
    ir_reps = eigensystem.levels(E, ket)
    # Build irreducible representation string
    reps = 'reuns', 'reuna', 'rebde'
    ir_str = [reps[i] for i in ir_reps]

    # Compute energy plot parameters
    k = index[sort_idx].sum(axis=1)  # n1 + n2
    w = 1 / (k + 1) - 0.01  # bar widths
    r = [j for i in range(n + 1) for j in range(i)]
    x = k - 0.5 + r / (k + 1)  # positions

    d_no = 0  # number of duplicate states

    clean_dir('eigenvectors')
    for i in range(eigenvectors.shape[0]):
        eigv_len = no_signif_el(eigenvectors[i])
        minor_ticks = np.arange(0, eigv_len, 0.5)
        # Plot label
        label = 'E = ' + str(E[i]) + '\n' + '$\\left|' + \
            str(ket[i][0]) + '\\,' + str(ket[i][1]) + '\\right\\rangle$\t' + \
            ir_str[i]
        fname = str(ket[i][0]) + ' ' + str(ket[i][1])  # filename

        index_plot(eigenvectors[i], eigv_len, label, index, sort_idx, fname,
                   d_no)

        energy_plot(eigenvectors[i], eigv_len, x, w, label, index, sort_idx,
                    fname, d_no)
Beispiel #8
0
def main(b, d, n):
    cd(b, d, n)
    # Get states
    E, eigenvectors, ket = eigensystem.get(return_eigv=True, return_ket=True)
    # Select stable levels
    st_idx = int(np.loadtxt('stable.txt')[0])
    E, eigenvectors, ket = E[:st_idx], eigenvectors[:st_idx], ket[:st_idx]
    if b:
        # Get irreducible representations
        ir_reps = eigensystem.levels(E, ket)
        rebde = np.loadtxt('rebde.dat', usecols=(0, ))
        reuna = np.loadtxt('reuna.dat', usecols=(0, ))
        reuns = np.loadtxt('reuns.dat', usecols=(0, ))
        # Compute participation ratio for each representation
        P_b = compute_p(eigenvectors, condition=np.where(ir_reps == 2))
        P_a = compute_p(eigenvectors, condition=np.where(ir_reps == 1))
        P_s = compute_p(eigenvectors, condition=np.where(ir_reps == 0))
        # Plot the participation ratio for each representation
        plt.scatter(rebde, P_b[::2], s=1, label='$\Gamma_b$')
        plt.scatter(reuna, P_a, s=1, label='$\Gamma_a$', color='r')
        plt.scatter(reuns, P_s, s=1, label='$\Gamma_s$', color='y')
        plt.xlabel('$E$')
        plt.ylabel('Participation ratio')
        plt.legend()
        plt.savefig('participation_ratio_rep.pdf')
        plt.close()
        # Plot the difference between the states of the bidimensional
        # representation
        plt.plot(rebde,
                 P_b[::2] - P_b[1::2],
                 lw=0.7,
                 label='$\Gamma_{b1} - \Gamma_{b2}$')
        plt.xlabel('$E$')
        plt.ylabel('$\\Delta$Participation ratio')
        plt.legend()
        plt.savefig('participation_ratio_rebde.pdf')
        plt.close()
    else:
        # P = 1 / (eigenvectors[0].size * np.sum(eigenvectors**4, axis=1))
        P = compute_p(eigenvectors)
        plt.scatter(E, P, s=1)
        plt.xlabel('$E$')
        plt.ylabel('Participation ratio')
        plt.savefig('participation_ratio.pdf')
        plt.close()
Beispiel #9
0
def b_plot(B, d, n_i, max_e, ax, msize, marker):
    """Plot eta as a function of B"""
    reps = 'reuna', 'reuns', 'rebde'
    rnames = {
        'reuna': r'$\Gamma_a$',
        'reuns': r'$\Gamma_s$',
        'rebde': r'$\Gamma_b$'
    }
    for r in reps:
        values = []
        for b in B:
            cd(b, d, n_i)
            rep = np.loadtxt(r + '.dat', usecols=(0, ))
            values.append(compute_eta(rep[rep < max_e] if max_e else rep))
            os.chdir('../../Scripts')
        # Plot the results
        ax.plot(B,
                values,
                linestyle='',
                label=rnames[r],
                markersize=msize,
                marker=marker)
 def pull(self, cr, uid, ids, context=None):
     if isinstance(ids, (int, long)):
         ids = [ids]
     for rep in self.browse(cr, uid, ids, context):
         if rep.state == 'draft':
             raise orm.except_orm(_('Error'), _('You cannot pull a repository not cloned'))
         with cd(path.join(self._parent_path, rep.relpath)):
             vcs = rep.vcs_id
             IrModuleRepository._call([vcs.cmd, vcs.cmd_pull])
     self.extract_modules(cr, uid, ids, context)
     self.write(cr, uid, ids, {'last_update': time.strftime('%Y-%m-%d %H:%M:%S')}, context)
     self.message_post(cr, uid, ids, body=_("Repository updated"), context=context)
     return True
 def clone(self, cr, uid, ids, context=None):
     if isinstance(ids, (int, long)):
         ids = [ids]
     with cd(self._parent_path):
         for rep in self.browse(cr, uid, ids, context):
             if rep.state != 'draft':
                 raise orm.except_orm(_('Error'), _('You cannot clone a repository already cloned'))
             vcs = rep.vcs_id
             IrModuleRepository._call([vcs.cmd, vcs.cmd_clone, rep.directory, rep.relpath])
     self.extract_modules(cr, uid, ids, context)
     self.write(cr, uid, ids, {'active': True, 'state': 'done', 'last_update': time.strftime('%Y-%m-%d %H:%M:%S')}, context)
     self.message_post(cr, uid, ids, body=_("Repository cloned"), context=context)
     return True
Beispiel #12
0
 def map_and_analyze(self, eqfil=None):
     if self.mapped is None:
         logger.debug('Mapping disabled.')
     elif self.mapped is True:
         logger.debug('is already mapped (skipping)!')
         return True
     elif self.mapped is False:
         with tools.cd(self.path):
             if eqfil is None:
                 self.mapped = analysis.main(self.map_settings, eqfil)
             else:
                 analysis.main(self.map_settings, eqfil)
     else:
         raise 'WTF'
Beispiel #13
0
def e_plot(b_i, d, n_i, max_energy, ax, msize, marker):
    """Plot eta as a function of deltaE"""
    cd(b_i, d, n_i)
    reps = 'reuna', 'reuns', 'rebde'
    rnames = {
        'reuna': r'$\Gamma_a$',
        'reuns': r'$\Gamma_s$',
        'rebde': r'$\Gamma_b$'
    }
    for r in reps:
        values = []
        rep = np.loadtxt(r + '.dat', usecols=(0, ))
        for max_e in max_energy:
            values.append(compute_eta(rep[rep < max_e] if max_e else rep))
        # Plot the results
        max_energy = np.array(max_energy)
        max_energy[max_energy == 0] = rep[-1] - rep[0]
        ax.plot(max_energy,
                values,
                linestyle='',
                label=r'$B=' + str(b_i) + r'$, ' + rnames[r],
                markersize=msize,
                marker=marker)
    os.chdir('../../Scripts')
Beispiel #14
0
def install_vim(config_path='/usr/lib/python2.7/config-x86_64-linux-gnu', remove_build_dir=True, tag=None):
    with tempdir(remove_build_dir) as build_dir:
        print('Building Vim at folder {}'.format(build_dir))
        vim_src_dir = os.path.join(build_dir, 'vim_src')
        logging.info('Cloning Vim repo')
        run(['hg', 'clone', 'https://vim.googlecode.com/hg/', vim_src_dir])
        with cd(vim_src_dir):
            if tag:
                run(['hg', 'update', tag]) #-rv7-3-1034, -rv7-4b-022
            run(['./configure', '--enable-multibyte', '--with-tlib=ncurses', '--enable-pythoninterp=yes', 
                '--enable-rubyinterp=yes', '--with-features=huge', '--with-python-config-dir={}'.format(config_path)])
            run(['make', vim_src_dir, '-j', '3'])
            run(['make', vim_src_dir, 'install'])
        logging.info('Vim compiled and installed. Linking to /usr/bin/vim')
        create_symlink('/usr/local/bin/vim', '/usr/bin/vim', backup=False)
Beispiel #15
0
def main():
    parser = argparse.ArgumentParser(description='Mecacell project generator')
    parser.add_argument("name", help='project name')
    parser.add_argument('-c', '--nocmake', help='don\'t generate CmakeList')
    parser.add_argument('-v',
                        '--noviewer',
                        help='no qt viewer, console code only')
    args = parser.parse_args()
    baseDirectory = os.path.dirname(os.path.abspath(__file__)) + \
        '/templates'
    env = Environment(loader=FileSystemLoader(searchpath=baseDirectory))
    viewerEnabled = True
    if args.noviewer is not None:
        viewerEnabled = False

    if (os.path.exists(args.name)):
        msg = t.colors.WARNING + 'path ' + args.name + \
            ' already exists. ' + t.colors.ENDC + 'Overwrite?'
        if not t.queryYN(msg, 'no'):
            sys.exit()
    else:
        os.makedirs(args.name)

    def mkdir(pname):
        if not os.path.exists(pname):
            os.makedirs(pname)

    with t.cd(args.name):
        projName = args.name.split('/')[-1]
        print t.colors.HEADER, 'Generating project', args.name, t.colors.ENDC
        sys.stdout.write(' * creating project architecture')
        if args.nocmake is None:
            mkdir('bin')
            mkdir('build')
        mkdir('src')
        mkdir('src/core')
        t.OK()
        tmplScenario = t.queryYN(
            'Do you want your scenario to be a class template (with cell type as parameter)?',
            'no')
        print 'Name of your scenario class? [default = "Scenario"]',
        scName = raw_input()
        if not scName:
            scName = 'Scenario'
        print 'Name of your cell class? [default = "Cell"]',
        cellName = raw_input()
        if not cellName:
            cellName = 'Cell'
        sys.stdout.write(' * generating base source files')
        with open("src/mainconsole.cpp", "wb") as fh:
            fh.write(
                env.get_template('mainconsole.cpp').render(
                    tmplScenario=tmplScenario, Scenario=scName, Cell=cellName))
        if viewerEnabled:
            with open("src/mainviewer.cpp", "wb") as fh:
                fh.write(
                    env.get_template('mainviewer.cpp').render(
                        tmplScenario=tmplScenario,
                        Scenario=scName,
                        Cell=cellName))
        with open("src/core/" + cellName.lower() + ".h", "wb") as fh:
            fh.write(env.get_template('cell.h').render(Cell=cellName))
        with open("src/core/" + cellName.lower() + ".cpp", "wb") as fh:
            fh.write(env.get_template('cell.cpp').render(Cell=cellName))
        if tmplScenario:
            with open("src/core/" + scName.lower() + ".hpp", "wb") as fh:
                fh.write(
                    env.get_template('scenario.hpp').render(Scenario=scName,
                                                            Cell=cellName))
        else:
            with open("src/core/" + scName.lower() + ".h", "wb") as fh:
                fh.write(
                    env.get_template('scenario.h').render(Scenario=scName,
                                                          Cell=cellName))
            with open("src/core/" + scName.lower() + ".cpp", "wb") as fh:
                fh.write(
                    env.get_template('scenario.cpp').render(Scenario=scName,
                                                            Cell=cellName))
        t.OK()
        if args.nocmake is None:
            sys.stdout.write(' * generating CMakeLists.txt')
            with open("CMakeLists.txt", "wb") as fh:
                fh.write(
                    env.get_template('CMakeLists.txt').render(
                        Project=projName, viewerEnabled=viewerEnabled))
            t.OK()
def main(b,
         d,
         n,
         delta_n,
         st_epsilon,
         lvl_epsilon,
         reselect=True,
         cut=0,
         bin_size=0.25,
         max_energy=0):
    if reselect:
        select_rep.main(b, d, n, delta_n, st_epsilon, lvl_epsilon, cut)
    reps = 'reuna', 'reuns', 'rebde'
    rnames = {
        'reuna': r'$\Gamma_a$',
        'reuns': r'$\Gamma_s$',
        'rebde': r'$\Gamma_b$'
    }
    cd(b, d, n)
    if max_energy:
        deltaE = max_energy
    else:
        deltaE = np.loadtxt('stable.txt')[1]
    count = int(4 / bin_size) + 1
    rel_sp = []  # relative spacings
    avg_sp = []  # average spacings
    w = []  # weights
    for r in reps:
        rep = np.loadtxt(r + '.dat', usecols=(0, ))
        if max_energy:
            rep = rep[rep <= max_energy]
        rel_sp.append(relSpacing(rep))
        avg_sp.append((rep[-1] - rep[0]) / rep.size)
        # P(s)Δs is the probability, P(s) is the probability density
        # P(s)Δs = Σ 1/3 * N_rep/N_tot
        w.append(np.ones(rel_sp[-1].shape) / (3 * rep.size * bin_size))
        # Don't plot if not all levels are used
        if not max_energy:
            fname = r + '.pdf'
            histogram(rel_sp[-1],
                      bins=np.linspace(0, 4, count),
                      fname=fname,
                      label=rnames[r],
                      xlabel='$s$',
                      figsize=(2.8, 3),
                      ylabel='No. of levels')
            fname = 'bar_' + r + '.pdf'
            bar_plot(rel_sp[-1],
                     label=rnames[r],
                     ylabel='s',
                     xlabel='index',
                     fname=fname,
                     dpi=400,
                     figsize=(2.8, 3),
                     title=r'$\frac{E_n-E_0}{N}=' +
                     '{:.3}'.format(avg_sp[-1]) + '$')

    # Save the average spacings
    fname = 'avg_sp' + \
        ('_max_e_' + str(max_energy) + '.txt' if max_energy else '.txt')
    with open(fname, 'w') as f:
        f.write('\n'.join([str(i) for i in avg_sp]))
    # Relative spacing histogram, P(s)
    # Don't plot if not all levels are used
    if not max_energy:
        fname = 'P(s)' + '_st_' + '{:.0e}'.format(st_epsilon) + '_eps_' + \
            '{:.0e}'.format(lvl_epsilon) + \
            ('_cut_' + '{:.2f}'.format(cut) + '.pdf' if cut else '.pdf')
        histogram(rel_sp,
                  bins=np.linspace(0, 4, count),
                  weights=w,
                  label=[rnames[i] for i in reps],
                  fname=fname,
                  stacked=True,
                  ylabel='$P(s)$',
                  xlabel='$s$',
                  count=count,
                  use_wigner=True,
                  use_poisson=True,
                  figsize=(5.8, 4.5))
    # Fitted P(s)
    fname = 'P(s)_fit_' + '{:.0e}'.format(st_epsilon) + '_eps_' + \
        '{:.0e}'.format(lvl_epsilon) + \
        ('_cut_' + '{:.2f}'.format(cut) if cut else '') + \
        ('_max_e_' + str(max_energy) + '.pdf' if max_energy else '.pdf')
    histogram(rel_sp,
              bins=np.linspace(0, 4, count),
              weights=w,
              ylim=(0, 1.05),
              title='$\\Delta E =' + '{:.5}'.format(deltaE) + '$',
              fname=fname,
              count=count,
              ylabel='$P(s)$',
              xlabel='$s$',
              stacked=True,
              label=[rnames[i] for i in reps],
              fit=True,
              max_e=max_energy,
              figsize=(5.8, 3.7))
    # For the cumulative distribution plots, each irreducible representation
    # is plotted individually (*3)
    # I(s) = Σ P(s) Δs = Σ Σ N_rep/N_tot * 1/Δs * Δs = Σ Σ N_rep/N_tot
    # (*bin_size)
    w = [wi * bin_size * 3 for wi in w]
    # cumulative relative spacing histogram, I(s)
    # Don't plot if not all levels are used
    if not max_energy:
        fname = 'I(s).pdf'
        histogram(rel_sp,
                  cumulative=True,
                  bins=np.linspace(0, 4, count),
                  ylabel=r'$I(s)$',
                  xlabel='$s$',
                  fname=fname,
                  weights=w,
                  label=[rnames[i] for i in reps],
                  count=count,
                  use_wigner=True,
                  use_poisson=True,
                  figsize=(5.8, 4.5))
    # Fitted I(s)
    fname = 'I(s)_fit' + \
        ('_max_e_' + str(max_energy) + '.pdf' if max_energy else '.pdf')
    histogram(rel_sp,
              cumulative=True,
              bins=np.linspace(0, 4, count),
              fit=True,
              ylabel=r'$I(s)$',
              xlabel='$s$',
              weights=w,
              count=count,
              label=[rnames[i] for i in reps],
              fname=fname,
              ylim=(0, 1.05),
              figsize=(5.8, 3.7))
    # Version
    with open('version.txt', 'w') as f:
        f.write('1.5.0')
    os.chdir("../../Scripts")
def main(b, d, n, delta_n, st_epsilon, lvl_epsilon, stable_only=True):
    start = timer()
    tools.cd(b, d, n)

    # Get data
    E, ket = eigensystem.get(return_ket=True)
    ir_reps = eigensystem.levels(E, ket, lvl_epsilon)
    if stable_only:  # choose all levels or only the stable ones
        stable_levels = int(np.loadtxt('stable.txt')[0])
        E = E[:stable_levels]

    rebde = np.loadtxt('rebde.dat', usecols=(0, ), unpack=True)
    reuna = np.loadtxt('reuna.dat', usecols=(0, ), unpack=True)
    reuns = np.loadtxt('reuns.dat', usecols=(0, ), unpack=True)

    # Bi-directional search
    E_in_rebde = np.in1d(E, rebde, assume_unique=False)
    E_in_reuna = np.in1d(E, reuna, assume_unique=False)
    E_in_reuns = np.in1d(E, reuns, assume_unique=False)

    rebde_in_E = np.in1d(rebde, E, assume_unique=False)
    reuna_in_E = np.in1d(reuna, E, assume_unique=False)
    reuns_in_E = np.in1d(reuns, E, assume_unique=False)

    if E.size < max(rebde.size, reuna.size, reuns.size):
        rebde = rebde[:E.size]
        reuna = reuna[:E.size]
        reuns = reuns[:E.size]

        rebde_in_E = rebde_in_E[:E.size]
        reuna_in_E = reuna_in_E[:E.size]
        reuns_in_E = reuns_in_E[:E.size]

    # Padding
    rebde = np.pad(rebde, pad_width=(0, E.size - rebde.size), mode='constant')
    reuna = np.pad(reuna, pad_width=(0, E.size - reuna.size), mode='constant')
    reuns = np.pad(reuns, pad_width=(0, E.size - reuns.size), mode='constant')

    rebde_in_E = np.pad(rebde_in_E,
                        pad_width=(False, E.size - rebde_in_E.size),
                        mode='constant')
    reuna_in_E = np.pad(reuna_in_E,
                        pad_width=(False, E.size - reuna_in_E.size),
                        mode='constant')
    reuns_in_E = np.pad(reuns_in_E,
                        pad_width=(False, E.size - reuns_in_E.size),
                        mode='constant')

    files = np.array([
        E, rebde, reuna, reuns, E_in_rebde, E_in_reuna, E_in_reuns, rebde_in_E,
        reuna_in_E, reuns_in_E
    ])

    with open("table.tex", "w") as f:
        f.write("\\documentclass{article}\n\n")
        f.write("\\usepackage[margin=0.2in]{geometry}\n")
        f.write("\\usepackage{longtable}\n")
        f.write("\\usepackage[table]{xcolor}\n\n")
        f.write("\\begin{document}\n\n")
        f.write("\\begin{longtable}{" + " | ".join(["c"] * 4) + "}\n")
        f.write("energy levels & rebde.dat & reuna.dat & reuns.dat\t\\\\\n")
        f.write("\\hline\n\\endfirsthead\n")
        for row in range(files.shape[1]):
            # Find the representation of the energy level
            c = 0
            for x in range(1, 4):
                if files[x + 3][row]:
                    c = x

            line = color(c, True) + '{:.18f}'.format(files[0][row]) + " & " + \
                " & ".join(color(x, files[x + 6][row]) +
                           '{:.18f}'.format(files[x][row])
                           for x in range(1, 4))
            f.write('\t' + line + " \\\\\n")
        f.write("\\end{longtable}")
        f.write("\n\n\\end{document}")

    os.chdir("../../Scripts")
    end = timer()
    print('total: ', end - start)
Beispiel #18
0
 def get_file_with_name(self, fname):
     with tools.cd(self.path):
         if os.path.exists(fname):
             return File(fname, read=True)
     raise IOError('File not found', fname, 'in', self.path)
Beispiel #19
0
def main(b, d, n):
    cd(b, d, n)
    # Get states
    E, eigenvectors, ket = eigensystem.get(return_eigv=True, return_ket=True)
    # Select stable levels
    st_idx = int(np.loadtxt('stable.txt')[0])
    E, eigenvectors, ket = E[:st_idx], eigenvectors[:st_idx], ket[:st_idx]

    # Get reference states
    cd(0.0, d, n)
    E_ref, eigenvectors_ref, ket_ref = eigensystem.get(return_eigv=True,
                                                       return_ket=True)
    # Select stable reference levels
    st_idx = int(np.loadtxt('stable.txt')[0])
    E_ref, eigenvectors_ref, ket_ref = E_ref[:st_idx], \
        eigenvectors_ref[:st_idx], ket_ref[:st_idx]
    # Reference participation ratio
    P_ref = compute_p(eigenvectors_ref)
    # Find the index of the states with energy closest to the reference ones
    # idx = np.searchsorted(E, E_ref)
    # idx = np.clip(idx, 1, len(E) - 1)
    # left = E[idx - 1]
    # right = E[idx]
    # idx -= E_ref - left < right - E_ref
    # Compute the participation ratio
    P = compute_p(eigenvectors)

    cd(b, d, n)
    ylim = ()
    ylim = plot(E,
                P,
                E_ref,
                P_ref,
                label='$B=' + str(b) + '$',
                fname='participation_ratio_cmp.pdf')

    # Get irreducible representations
    ir_reps = eigensystem.levels(E, ket)
    rebde = np.loadtxt('rebde.dat', usecols=(0, ))
    reuna = np.loadtxt('reuna.dat', usecols=(0, ))
    reuns = np.loadtxt('reuns.dat', usecols=(0, ))
    # Compute participation ratio for each representation
    P_b = compute_p(eigenvectors, condition=np.where(ir_reps == 2))
    P_a = compute_p(eigenvectors, condition=np.where(ir_reps == 1))
    P_s = compute_p(eigenvectors, condition=np.where(ir_reps == 0))

    # Plot the participation ratio for each representation
    plot(rebde,
         P_b[::2],
         E_ref,
         P_ref,
         label='$\Gamma_b$',
         ylim=ylim,
         fname='participation_ratio_cmp_rebde.pdf')
    plot(reuna,
         P_a,
         E_ref,
         P_ref,
         label='$\Gamma_a$',
         ylim=ylim,
         fname='participation_ratio_cmp_reuna.pdf')
    plot(reuns,
         P_s,
         E_ref,
         P_ref,
         label='$\Gamma_s$',
         ylim=ylim,
         fname='participation_ratio_cmp_reuns.pdf')
Beispiel #20
0
def main():
    parser = argparse.ArgumentParser(description='Mecacell project generator')
    parser.add_argument("name", help='project name')
    parser.add_argument('-c', '--nocmake', help='don\'t generate CmakeList')
    parser.add_argument('-v', '--noviewer',
                        help='no qt viewer, console code only')
    args = parser.parse_args()
    baseDirectory = os.path.dirname(os.path.abspath(__file__)) + \
        '/templates'
    env = Environment(loader=FileSystemLoader(searchpath=baseDirectory))
    viewerEnabled = True
    if args.noviewer is not None:
        viewerEnabled = False

    if (os.path.exists(args.name)):
        msg = t.colors.WARNING + 'path ' + args.name + \
            ' already exists. ' + t.colors.ENDC + 'Overwrite?'
        if not t.queryYN(msg, 'no'):
            sys.exit()
    else:
        os.makedirs(args.name)

    def mkdir(pname):
        if not os.path.exists(pname):
            os.makedirs(pname)

    with t.cd(args.name):
        projName = args.name.split('/')[-1]
        print t.colors.HEADER, 'Generating project', args.name, t.colors.ENDC
        sys.stdout.write(' * creating project architecture')
        if args.nocmake is None:
            mkdir('bin')
            mkdir('build')
        mkdir('src')
        mkdir('src/core')
        t.OK()
        tmplScenario = t.queryYN(
            'Do you want your scenario to be a class template (with cell type as parameter)?', 'no')
        print 'Name of your scenario class? [default = "Scenario"]',
        scName = raw_input()
        if not scName:
            scName = 'Scenario'
        print 'Name of your cell class? [default = "Cell"]',
        cellName = raw_input()
        if not cellName:
            cellName = 'Cell'
        sys.stdout.write(' * generating base source files')
        with open("src/mainconsole.cpp", "wb") as fh:
                fh.write(env.get_template('mainconsole.cpp').render(
                    tmplScenario=tmplScenario, Scenario=scName, Cell=cellName))
        if viewerEnabled:
            with open("src/mainviewer.cpp", "wb") as fh:
                fh.write(env.get_template('mainviewer.cpp').render(
                    tmplScenario=tmplScenario, Scenario=scName, Cell=cellName))
        with open("src/core/" + cellName.lower() + ".h", "wb") as fh:
                fh.write(env.get_template('cell.h').render(Cell=cellName))
        with open("src/core/" + cellName.lower() + ".cpp", "wb") as fh:
                fh.write(env.get_template('cell.cpp').render(Cell=cellName))
        if tmplScenario:
            with open("src/core/" + scName.lower() + ".hpp", "wb") as fh:
                fh.write(env.get_template('scenario.hpp').render(
                    Scenario=scName, Cell=cellName))
        else:
            with open("src/core/" + scName.lower() + ".h", "wb") as fh:
                fh.write(env.get_template('scenario.h').render(
                    Scenario=scName, Cell=cellName))
            with open("src/core/" + scName.lower() + ".cpp", "wb") as fh:
                fh.write(env.get_template('scenario.cpp').render(
                    Scenario=scName, Cell=cellName))
        t.OK()
        if args.nocmake is None:
            sys.stdout.write(' * generating CMakeLists.txt')
            with open("CMakeLists.txt", "wb") as fh:
                fh.write(env.get_template('CMakeLists.txt').render(
                    Project=projName, viewerEnabled=viewerEnabled))
            t.OK()
Beispiel #21
0
    def compute(self):
        """
        Run Q:
        Forward trough inputfile-list to inputfile without logfile and run it.
        """
        with tools.cd(self.path):
            # Check if we're done arleady
            if self.is_finished():
                try:
                    logger.warning('Nothing to compute. %s %s', self.if_pos,
                                   self.inputfiles[self.if_pos])
                except IndexError:
                    logger.warning('Nothing to compute. %s', self.if_pos)

                # TODO: 1) automatic mapping

            else:
                # TODO: add restart-capability

                if not self.is_finished():
                    if len(self.wus) > self.if_pos:
                        old_input = self.wus[self.if_pos].inputfile[0]
                        new_input = self.inputfiles[self.if_pos]
                        if old_input == new_input:
                            if self.wus[self.if_pos].checklogfile() == 0:
                                # this WorkUnit is finished we; load next one
                                logger.warning(
                                    'this run is already done skipping %s',
                                    self.wus[self.if_pos].inputfile[0])
                                self.if_pos += 1
                                self.compute()
                                return
                    # Generate new compute units, until one w/o logfile exists
                    while True:
                        if self.is_finished():
                            return

                        self.cwu = self.create_next_workunit()
                        if (self.cwu.status is not None
                                and self.cwu.status == 0):
                            logger.debug('skip step %s',
                                         self.inputfiles[self.if_pos][0])
                            self._check_eq_and_map()
                            self.wus.append(self.cwu)
                            self.if_pos += 1
                            continue
                        break

                    exe = self.q_dyn5_exe
                    self.check_exe()

                    if len(self.wus) != self.cwu.unitnumber:
                        raise (Exception, 'discrepancy in input file order')

                    if self.cwu.run(exe) == 0:
                        self.wus.append(self.cwu)
                        self._check_eq_and_map()
                    else:
                        err = 'There was a problem with step: '
                        err += str(self.if_pos)
                        err += ', in inputfile'
                        err += str(self.inputfiles[self.if_pos][0])
                        err += NLC + 'The status Code was:'
                        err += str(self.cwu.status)
                        err += NLC + NLC + 'The Error Messages where: '
                        err += NLC + NLC + 'Directory' + os.getcwd()
                        err += str(self.cwu.errMsg) + NLC
                        err += 'Will Raise Exception...'
                        logger.warning(err)
                        raise (Exception, 'computation failed')

                    # increment for next step
                    self.if_pos += 1