def test_callable_header():
class Bed(object):
def __init__(self, toks):
self.chrom = toks[0]
self.start = int(toks[1])
self.end = int(toks[2])
fh = nopen(op.join(DATA, "file_data.txt"))
fh.readline() # drop header.
for bed in reader(fh, header=Bed):
assert bed.chrom
assert isinstance(bed.start, int)
def test_callable_header():
class Bed(object):
def __init__(self, toks):
self.chrom = toks[0]
self.start = int(toks[1])
self.end = int(toks[2])
fh = nopen(op.join(DATA, "file_data.txt"))
fh.readline() # drop header.
for bed in reader(fh, header=Bed):
assert bed.chrom
assert isinstance(bed.start, int)
def test_process_subst():
assert not len([x for x in nopen("|cat <(less %s)") if x.strip()])
assert len([x for x in nopen("|cat <(less %s)" % __file__.rstrip('c')) if x.strip()])
def test_nopen_raises():
try:
next(nopen("|asdfasdfasdfasdfasdf"))
except StopIteration:
raise ProcessException
def check_nopen(fname):
d = nopen(fname)
assert hasattr(d, "__iter__")
def test_process_subst():
assert not len([x for x in nopen("|cat <(less %s)") if x.strip()])
assert len([
x for x in nopen("|cat <(less %s)" % __file__.rstrip('c'))
if x.strip()
])
def test_nopen_raises():
next(nopen("|asdfasdfasdfasdfasdf"))
def check_nopen(fname):
d = nopen(fname)
assert hasattr(d, "__iter__")
def test_nopen_raises():
next(nopen("|asdfasdfasdfasdfasdf"))
def test_nopen_raises():
try:
next(nopen("|asdfasdfasdfasdfasdf"))
except StopIteration:
raise ProcessException