def data_sampler(dataset, shuffle, distributed):
if distributed:
return data.distributed.DistributedSampler(dataset, shuffle=shuffle)
if shuffle:
return data.RandomSampler(dataset)
else:
return data.SequentialSampler(dataset)
def get_data(transform, mode='train'):
print('[embeddings.py] Loading data for "%s" ...' % mode)
global dataset
if args.dataset == 'ucf101':
dataset = UCF101_3d(mode=mode,
transform=transform,
seq_len=args.seq_len,
num_seq=args.num_seq,
downsample=args.ds,
which_split=args.split)
elif args.dataset == 'hmdb51':
dataset = HMDB51_3d(mode=mode,
transform=transform,
seq_len=args.seq_len,
num_seq=args.num_seq,
downsample=args.ds,
which_split=args.split)
elif args.dataset == 'ucf11':
# no split here
dataset = UCF11_3d(mode=mode,
transform=transform,
num_seq=args.num_seq,
seq_len=args.seq_len,
downsample=args.ds)
elif args.dataset == 'block_toy':
# no split here
dataset = block_toy(mode=mode,
transform=transform,
num_seq=args.num_seq,
seq_len=args.seq_len,
downsample=args.ds,
background=args.background)
else:
raise ValueError('dataset not supported')
# shuffle data
# print (dataset.shape)
my_sampler = data.SequentialSampler(dataset)
# print(len(dataset)
if mode == 'val':
data_loader = data.DataLoader(dataset,
batch_size=args.batch_size,
sampler=my_sampler,
shuffle=False,
num_workers=16,
pin_memory=True,
drop_last=True)
elif mode == 'test':
data_loader = data.DataLoader(dataset,
batch_size=args.batch_size,
sampler=my_sampler,
shuffle=False,
num_workers=16,
pin_memory=True)
print('"%s" dataset size: %d' % (mode, len(dataset)))
return data_loader
def make_data_sampler(dataset,
is_train=True,
shuffle=True,
is_distributed=False):
if is_train:
sampler = dutils.RandomSampler(dataset)
else:
sampler = dutils.SequentialSampler(dataset)
return sampler
def param_calculation(self, args):
if args.seed is not None:
self.__make_reproducible(args.seed)
transform = transforms.Compose(
[transforms.ToPILImage(), transforms.Resize((160, 64)), transforms.ToTensor()]
)
labels = pd.read_csv(os.path.join('/home/edisn/edisn/TeamClassifier/team124_dataset/', 'train.csv'))
train_data, _ = train_test_split(labels, stratify=labels.cls, test_size=0.1)
# dataset = DigitDataset(args.root, split="train", transform=transform)
dataset = TeamDataset(train_data, '/home/edisn/edisn/TeamClassifier/team124_dataset/', transform=transform)
num_samples = args.num_samples
if num_samples is None:
num_samples = len(dataset)
if num_samples < len(dataset):
sampler = FiniteRandomSampler(dataset, num_samples)
else:
sampler = data.SequentialSampler(dataset)
loader = data.DataLoader(
dataset,
sampler=sampler,
num_workers=args.num_workers,
batch_size=args.batch_size,
)
running_mean = RunningAverage(device=args.device)
running_std = RunningAverage(device=args.device)
num_batches = ceil(num_samples / args.batch_size)
with torch.no_grad():
for batch, (images, _) in enumerate(loader, 1):
images = images.to(args.device)
images_flat = torch.flatten(images, 2)
mean = torch.mean(images_flat, dim=2)
running_mean.update(mean)
std = torch.std(images_flat, dim=2)
running_std.update(std)
if not args.quiet and batch % args.print_freq == 0:
print(
(
f"[{batch:6d}/{num_batches}] "
f"mean={running_mean}, std={running_std}"
)
)
print(f"mean={running_mean}, std={running_std}")
return running_mean.tolist(), running_std.tolist()
def param_calculation(self, config, dataset_path, csv_path):
if ast.literal_eval(config.normalization_param.seed) is not None:
self.__make_reproducible(config.normalization_param.seed)
transform = transforms.Compose([
transforms.ToPILImage(),
transforms.Resize((160, 64)),
transforms.ToTensor()
])
labels = pd.read_csv(csv_path)
train_data, _ = train_test_split(labels,
stratify=labels.cls,
test_size=0.2)
dataset = TeamDataset(train_data, dataset_path, transform=transform)
num_samples = ast.literal_eval(config.normalization_param.num_samples)
if num_samples is None:
num_samples = len(dataset)
if num_samples < len(dataset):
sampler = FiniteRandomSampler(dataset, num_samples)
else:
sampler = data.SequentialSampler(dataset)
loader = data.DataLoader(
dataset,
sampler=sampler,
num_workers=config.normalization_param.num_workers,
batch_size=config.normalization_param.batch_size,
)
running_mean = RunningAverage(device=config.normalization_param.device)
running_std = RunningAverage(device=config.normalization_param.device)
num_batches = ceil(num_samples / config.normalization_param.batch_size)
with torch.no_grad():
for batch, (images, _) in enumerate(loader, 1):
images = images.to(config.normalization_param.device)
images_flat = torch.flatten(images, 2)
mean = torch.mean(images_flat, dim=2)
running_mean.update(mean)
std = torch.std(images_flat, dim=2)
running_std.update(std)
if not config.normalization_param.quiet and batch % config.normalization_param.print_freq == 0:
print((f"[{batch:6d}/{num_batches}] "
f"mean={running_mean}, std={running_std}"))
print(f"mean={running_mean}, std={running_std}")
return running_mean.tolist(), running_std.tolist()
def create_data_loader(config, idxs, shuffle=True):
if shuffle:
sampler = TD.SubsetRandomSampler(idxs)
dataset = config.dataset
else:
sampler = TD.SequentialSampler(idxs)
dataset = TD.Subset(config.dataset, idxs)
return TD.DataLoader(
dataset,
batch_size=config.batch_size,
sampler=sampler,
pin_memory=True, num_workers=config.data_loader_num_workers
)
def get_video_data_loader(path, vid_range, save_path, batch_size=2):
dataset = VideoDataset(path, vid_range, save_path)
data_loader = data.DataLoader(
dataset,
batch_size=batch_size,
sampler=data.SequentialSampler(dataset),
shuffle=False,
num_workers=2,
collate_fn=individual_collate,
pin_memory=True,
drop_last=True
)
return data_loader
def data_sampler(dataset, shuffle, distributed, weights=None):
if distributed:
return data.distributed.DistributedSampler(dataset, shuffle=shuffle)
if weights is not None:
return data.WeightedRandomSampler(weights,
len(weights),
replacement=True)
if shuffle:
return data.RandomSampler(dataset)
else:
return data.SequentialSampler(dataset)
def create_itrator_for_dataset(self,
input_ids=None,
attention_masks=None,
label_arg=None):
'''
把input_id,att_mask,label(如果有)转换成dataloader
会被labelDataset继承，此时label_arg会被赋值
:return: dataloader
'''
assert input_ids and attention_masks, f'input_ids,attention_masks必须被赋值!'
inputs, masks = torch.tensor(input_ids), torch.tensor(attention_masks)
if self.use_variable_batch:
# 依据每天微博数，variable batch size
if not label_arg:
input_data = TensorDataset(
inputs,
masks,
preprocessed_data=self.preprocessed_data.cleaned_data)
else:
labels = torch.tensor(label_arg)
input_data = TensorDataset(
inputs,
masks,
labels,
preprocessed_data=self.preprocessed_data.cleaned_data)
input_sampler = SequentialSampler(input_data)
return tud.DataLoader(input_data,
batch_sampler=input_sampler,
shuffle=False,
num_workers=4)
else:
# 正常loaddataset
if label_arg == None:
input_data = tud.TensorDataset(inputs, masks)
else:
labels = torch.tensor(label_arg)
input_data = tud.TensorDataset(inputs, masks, labels)
input_sampler = tud.SequentialSampler(input_data)
return tud.DataLoader(input_data,
sampler=input_sampler,
shuffle=False,
batch_size=int(
utils.cfg.get('HYPER_PARAMETER',
'batch_size')),
num_workers=4)
def test_sampler_wrapper(self, mock_len, mock_get_item):
def side_effect(idx):
return [0, 1, None, 3, 4, 5][idx]
mock_get_item.side_effect = side_effect
mock_len.return_value = 6
dataset = data.TensorDataset(torch.arange(0, 10))
dataset = nonechucks.SafeDataset(dataset)
self.assertEqual(len(dataset), 6)
sequential_sampler = data.SequentialSampler(dataset)
dataloader = data.DataLoader(dataset,
sampler=nonechucks.SafeSampler(
dataset, sequential_sampler))
for i_batch, sample_batched in enumerate(dataloader):
print('Sample {}: {}'.format(i_batch, sample_batched))
def data_loader(root, phase, batch_size, tokenizer, config):
dataset = load_and_cache_examples(root, tokenizer, config=config, mode=phase)
if phase == 'train':
sampler = data.RandomSampler(dataset)
else:
sampler = data.SequentialSampler(dataset)
dataloader = data.DataLoader(dataset=dataset, sampler=sampler, batch_size=batch_size)
return dataloader
# from transformers import AutoTokenizer
# dataloader = data_loader('/home/ubuntu/aikorea/sbs/data', 'train', 32, AutoTokenizer.from_pretrained(config.bert_model_name))
# print(len(dataloader))
def create_dataloader(source_strings, target_strings, text_encoder, batch_size,
shuffle_batches_each_epoch):
'''target_strings parameter can be None'''
dataset = TranslitData(source_strings,
target_strings,
text_encoder=text_encoder)
seq_sampler = torch_data.SequentialSampler(dataset)
batch_sampler = BatchSampler(seq_sampler,
batch_size=batch_size,
drop_last=False,
shuffle_each_epoch=shuffle_batches_each_epoch)
dataloader = torch_data.DataLoader(dataset,
batch_sampler=batch_sampler,
collate_fn=collate_fn)
return dataloader
def get_latents(self, dset):
self.enc.eval()
collected_latents = []
determin_dl = data.DataLoader(dset,
batch_sampler=data.BatchSampler(
data.SequentialSampler(dset),
self.batch_size,
drop_last=False),
pin_memory=False)
for idx, (xb, yb, tb) in enumerate(determin_dl):
batch_latents = self.enc(xb)
batch_latents = batch_latents.view(batch_latents.shape[0],
-1).detach().cpu().numpy()
collected_latents.append(batch_latents)
collected_latents = np.concatenate(collected_latents, axis=0)
return collected_latents
def __init__(self, dataset, output_size, device, config):
self.dataset = dataset
self.output_size = output_size
self.device = device
if hasattr(config, "task") and hasattr(config.task, "init_index"):
from utils import data_sampler # Avoid import error from COCO-GAN
sampler = data_sampler(dataset,
shuffle=False,
init_index=config.task.init_index)
else:
sampler = data.SequentialSampler(dataset)
self.dataloader_proto = data.DataLoader(
dataset,
batch_size=config.train_params.batch_size,
sampler=sampler,
drop_last=False,
num_workers=16,
)
self.dataloader = None
def _setup_dataloader_from_config(self, cfg: DictConfig):
if cfg.get("load_from_cached_dataset", False):
logging.info('Loading from cached dataset %s' %
(cfg.src_file_name))
if cfg.src_file_name != cfg.tgt_file_name:
raise ValueError(
"src must be equal to target for cached dataset")
dataset = pickle.load(open(cfg.src_file_name, 'rb'))
dataset.reverse_lang_direction = cfg.get("reverse_lang_direction",
False)
else:
dataset = TranslationDataset(
dataset_src=str(Path(cfg.src_file_name).expanduser()),
dataset_tgt=str(Path(cfg.tgt_file_name).expanduser()),
tokens_in_batch=cfg.tokens_in_batch,
clean=cfg.get("clean", False),
max_seq_length=cfg.get("max_seq_length", 512),
min_seq_length=cfg.get("min_seq_length", 1),
max_seq_length_diff=cfg.get("max_seq_length_diff", 512),
max_seq_length_ratio=cfg.get("max_seq_length_ratio", 512),
cache_ids=cfg.get("cache_ids", False),
cache_data_per_node=cfg.get("cache_data_per_node", False),
use_cache=cfg.get("use_cache", False),
reverse_lang_direction=cfg.get("reverse_lang_direction",
False),
)
dataset.batchify(self.encoder_tokenizer, self.decoder_tokenizer)
if cfg.shuffle:
sampler = pt_data.RandomSampler(dataset)
else:
sampler = pt_data.SequentialSampler(dataset)
return torch.utils.data.DataLoader(
dataset=dataset,
batch_size=1,
sampler=sampler,
num_workers=cfg.get("num_workers", 2),
pin_memory=cfg.get("pin_memory", False),
drop_last=cfg.get("drop_last", False),
)
def main():
np.random.seed(50)
X_test = scipy.io.loadmat('Processed_data/HRF_test_noised.mat')
X_test = X_test['HRF_test_noised']
n = X_test.shape[0]
X_test = np.concatenate((X_test[0:int(n / 2), :], X_test[int(n / 2):, :]),
axis=1)
Y_test = scipy.io.loadmat('Processed_data/HRF_test.mat')
Y_test = Y_test['HRF_test']
n = Y_test.shape[0]
Y_test = np.concatenate((Y_test[0:int(n / 2), :], Y_test[int(n / 2):, :]),
axis=1)
X_test = X_test * 1000000
Y_test = Y_test * 1000000
X_test = X_test[0:100, :]
Y_test = Y_test[0:100, :]
test_set = Dataset(X_test, Y_test)
testloader = torch.utils.data.DataLoader(
dataset=test_set,
batch_size=512,
sampler=tordata.SequentialSampler(test_set),
num_workers=2)
net = Net_8layers()
hdf5_filepath = "networks/8layers"
net.load_state_dict(
torch.load(hdf5_filepath, map_location=torch.device('cpu')))
print('loaded nn file')
for i, data in enumerate(testloader, 0):
print(i)
inputs = data[0]
inputs = inputs.float()
start_time = time.time()
net(inputs)
print("--- %s seconds ---" % (time.time() - start_time))
return
def main():
args = parse_args()
config = load_config(os.path.join(args.models_path, args.exp_name))
if config['model'] == 'TextTransposeModel':
test_set = DatasetTextImages(path=args.test_data_path, patch_size=None,
aug_resize_factor_range=None, scale=config['scale'])
else:
test_set = DatasetFromSingleImages(path=args.test_data_path, patch_size=None,
aug_resize_factor_range=None, scale=config['scale'])
batch_sampler = Data.BatchSampler(
sampler=Data.SequentialSampler(test_set),
batch_size=1,
drop_last=True
)
evaluation_data_loader = Data.DataLoader(dataset=test_set, num_workers=0, batch_sampler=batch_sampler)
trainer = Trainer(name=args.exp_name, models_root=args.models_path, resume=True)
trainer.load_best()
psnr = PSNR(name='PSNR', border=config['border'])
tic = time.time()
count = 0
for batch in tqdm(evaluation_data_loader):
output = trainer.predict(batch=batch)
psnr.update(batch[1], output)
count += 1
toc = time.time()
print('FPS: {}, SAMPLES: {}'.format(float(count) / (toc - tic), count))
print('PSNR: {}'.format(psnr.get()))
self.worker_result_queue.close()
# Exit workers now.
for q in self.index_queues:
q.put(None)
# Indicate that no more data will be put on this queue by the
# current process.
q.close()
for w in self.workers:
w.join()
def __del__(self):
if self.num_workers > 0:
self._shutdown_workers()
if __name__ == '__main__':
from torchvision import transforms
from data.base import DemoDataset
from torch.utils import data
dataset = DemoDataset(20)
transform_fn = [transforms.Compose([transforms.Resize((s, s)), transforms.ToTensor()]) for s in [10, 15, 20, 25,
30, 35, 40]]
dataset = dataset.transform(transform_fn[0])
sampler = data.SequentialSampler(dataset)
batch_sampler = data.sampler.BatchSampler(sampler, batch_size=4, drop_last=False)
loader = RandomTransformDataLoader(transform_fn, dataset, batch_sampler=batch_sampler, interval=1, num_workers=4)
for i, batch in enumerate(loader):
print(batch.shape)
def get_dataset_loaders(args, transform, mode='train'):
print('Loading data for "%s" ...' % mode)
if type(args) != dict:
args_dict = deepcopy(vars(args))
else:
args_dict = args
if args_dict['debug']:
orig_mode = mode
mode = 'train'
use_big_K400 = False
if args_dict["dataset"] == 'kinetics':
use_big_K400 = args_dict["img_dim"] > 150
dataset = Kinetics_3d(
mode=mode,
transform=transform,
seq_len=args_dict["seq_len"],
num_seq=args_dict["num_seq"],
downsample=args_dict["ds"],
vals_to_return=args_dict["data_sources"].split('_'),
use_big=use_big_K400,
)
elif args_dict["dataset"] == 'ucf101':
dataset = UCF101_3d(
mode=mode,
transform=transform,
seq_len=args_dict["seq_len"],
num_seq=args_dict["num_seq"],
downsample=args_dict["ds"],
vals_to_return=args_dict["data_sources"].split('_'),
debug=args_dict["debug"])
elif args_dict["dataset"] == 'jhmdb':
dataset = JHMDB_3d(mode=mode,
transform=transform,
seq_len=args_dict["seq_len"],
num_seq=args_dict["num_seq"],
downsample=args_dict["ds"],
vals_to_return=args_dict["data_sources"].split('_'),
sampling_method=args_dict["sampling"])
elif args_dict["dataset"] == 'hmdb51':
dataset = HMDB51_3d(
mode=mode,
transform=transform,
seq_len=args_dict["seq_len"],
num_seq=args_dict["num_seq"],
downsample=args_dict["ds"],
vals_to_return=args_dict["data_sources"].split('_'),
sampling_method=args_dict["sampling"])
else:
raise ValueError('dataset not supported')
val_sampler = data.SequentialSampler(dataset)
if use_big_K400:
train_sampler = data.RandomSampler(dataset,
replacement=True,
num_samples=int(0.2 * len(dataset)))
else:
train_sampler = data.RandomSampler(dataset)
if args_dict["debug"]:
if orig_mode == 'val':
train_sampler = data.RandomSampler(dataset,
replacement=True,
num_samples=200)
else:
train_sampler = data.RandomSampler(dataset,
replacement=True,
num_samples=2000)
val_sampler = data.RandomSampler(dataset)
# train_sampler = data.RandomSampler(dataset, replacement=True, num_samples=100)
data_loader = None
if mode == 'train':
data_loader = data.DataLoader(dataset,
batch_size=args_dict["batch_size"],
sampler=train_sampler,
shuffle=False,
num_workers=args_dict["num_workers"],
collate_fn=data_utils.individual_collate,
pin_memory=True,
drop_last=True)
elif mode == 'val':
data_loader = data.DataLoader(dataset,
sampler=val_sampler,
batch_size=args_dict["batch_size"],
shuffle=False,
num_workers=args_dict["num_workers"],
collate_fn=data_utils.individual_collate,
pin_memory=True,
drop_last=True)
elif mode == 'test':
data_loader = data.DataLoader(dataset,
sampler=val_sampler,
batch_size=args_dict["batch_size"],
shuffle=False,
num_workers=args_dict["num_workers"],
collate_fn=data_utils.individual_collate,
pin_memory=True,
drop_last=False)
print('"%s" dataset size: %d' % (mode, len(dataset)))
return data_loader
def _setup_dataloader_from_config(self, cfg: DictConfig):
if cfg.get("load_from_cached_dataset", False):
logging.info('Loading from cached dataset %s' %
(cfg.src_file_name))
if cfg.src_file_name != cfg.tgt_file_name:
raise ValueError(
"src must be equal to target for cached dataset")
dataset = pickle.load(open(cfg.src_file_name, 'rb'))
dataset.reverse_lang_direction = cfg.get("reverse_lang_direction",
False)
elif cfg.get("use_tarred_dataset", False):
if cfg.get('tar_files') is None:
raise FileNotFoundError("Could not find tarred dataset.")
logging.info(f'Loading from tarred dataset {cfg.get("tar_files")}')
if cfg.get("metadata_file", None) is None:
raise FileNotFoundError(
"Could not find metadata path in config")
dataset = TarredTranslationDataset(
text_tar_filepaths=cfg.tar_files,
metadata_path=cfg.metadata_file,
encoder_tokenizer=self.encoder_tokenizer,
decoder_tokenizer=self.decoder_tokenizer,
shuffle_n=cfg.get("tar_shuffle_n", 100),
shard_strategy=cfg.get("shard_strategy", "scatter"),
global_rank=self.global_rank,
world_size=self.world_size,
reverse_lang_direction=cfg.get("reverse_lang_direction",
False),
)
return torch.utils.data.DataLoader(
dataset=dataset,
batch_size=1,
num_workers=cfg.get("num_workers", 2),
pin_memory=cfg.get("pin_memory", False),
drop_last=cfg.get("drop_last", False),
)
else:
dataset = TranslationDataset(
dataset_src=str(Path(cfg.src_file_name).expanduser()),
dataset_tgt=str(Path(cfg.tgt_file_name).expanduser()),
tokens_in_batch=cfg.tokens_in_batch,
clean=cfg.get("clean", False),
max_seq_length=cfg.get("max_seq_length", 512),
min_seq_length=cfg.get("min_seq_length", 1),
max_seq_length_diff=cfg.get("max_seq_length_diff", 512),
max_seq_length_ratio=cfg.get("max_seq_length_ratio", 512),
cache_ids=cfg.get("cache_ids", False),
cache_data_per_node=cfg.get("cache_data_per_node", False),
use_cache=cfg.get("use_cache", False),
reverse_lang_direction=cfg.get("reverse_lang_direction",
False),
)
dataset.batchify(self.encoder_tokenizer, self.decoder_tokenizer)
if cfg.shuffle:
sampler = pt_data.RandomSampler(dataset)
else:
sampler = pt_data.SequentialSampler(dataset)
return torch.utils.data.DataLoader(
dataset=dataset,
batch_size=1,
sampler=sampler,
num_workers=cfg.get("num_workers", 2),
pin_memory=cfg.get("pin_memory", False),
drop_last=cfg.get("drop_last", False),
)
train_set = Dataset(X_train, Y_train)
val_set = Dataset(X_val, Y_val)
test_set = Dataset(X_test)
# %% define data loaders
trainloader = torch.utils.data.DataLoader(
dataset=train_set,
batch_size=512,
sampler=tordata.RandomSampler(train_set),
num_workers=2)
valloader = torch.utils.data.DataLoader(
dataset=val_set,
batch_size=512,
sampler=tordata.SequentialSampler(val_set),
num_workers=2)
testloader = torch.utils.data.DataLoader(
dataset=test_set,
batch_size=32,
sampler=tordata.SequentialSampler(test_set),
num_workers=2)
# %% trian and validate
data_loaders = {"train": trainloader, "val": valloader}
data_lengths = {"train": n_train, "val": SampleSize - n_train}
model = ['8layers']
#loss_modes = ['mse','mse+snr','mse+std','mse+snr+std']
loss_modes = ['mse+snr+std']
#torch.set_num_threads(16)
def data_sampler(dataset, shuffle):
if shuffle:
return data.RandomSampler(dataset)
else:
return data.SequentialSampler(dataset)
def get_data(args,
mode='train',
return_label=False,
hierarchical_label=False,
action_level_gt=False,
num_workers=0,
path_dataset='',
path_data_info=''):
if hierarchical_label and args.dataset not in ['finegym', 'hollywood2']:
raise Exception(
'Hierarchical information is only implemented in finegym and hollywood2 datasets'
)
if return_label and not action_level_gt and args.dataset != 'finegym':
raise Exception(
'subaction only subactions available in finegym dataset')
if mode == 'train':
transform = transforms.Compose([
augmentation.RandomSizedCrop(size=args.img_dim,
consistent=True,
p=1.0),
augmentation.RandomHorizontalFlip(consistent=True),
augmentation.RandomGray(consistent=False, p=0.5),
augmentation.ColorJitter(brightness=0.5,
contrast=0.5,
saturation=0.5,
hue=0.25,
p=1.0),
augmentation.ToTensor(),
augmentation.Normalize()
])
else:
transform = transforms.Compose([
augmentation.CenterCrop(size=args.img_dim, consistent=True),
augmentation.ToTensor(),
augmentation.Normalize()
])
if args.dataset == 'kinetics':
dataset = Kinetics600(mode=mode,
transform=transform,
seq_len=args.seq_len,
num_seq=args.num_seq,
downsample=5,
return_label=return_label,
return_idx=False,
path_dataset=path_dataset,
path_data_info=path_data_info)
elif args.dataset == 'hollywood2':
if return_label:
assert action_level_gt, 'hollywood2 does not have subaction labels'
dataset = Hollywood2(mode=mode,
transform=transform,
seq_len=args.seq_len,
num_seq=args.num_seq,
downsample=args.ds,
return_label=return_label,
hierarchical_label=hierarchical_label,
path_dataset=path_dataset,
path_data_info=path_data_info)
elif args.dataset == 'finegym':
if hierarchical_label:
assert not action_level_gt, 'finegym does not have hierarchical information at the action level'
dataset = FineGym(
mode=mode,
transform=transform,
seq_len=args.seq_len,
num_seq=args.num_seq,
fps=int(25 / args.ds), # approx
return_label=return_label,
hierarchical_label=hierarchical_label,
action_level_gt=action_level_gt,
path_dataset=path_dataset,
return_idx=False,
path_data_info=path_data_info)
elif args.dataset == 'movienet':
assert not return_label, 'Not yet implemented (actions not available online)'
assert args.seq_len == 3, 'We only have 3 frames per subclip/scene, but always 3'
dataset = MovieNet(mode=mode,
transform=transform,
num_seq=args.num_seq,
path_dataset=path_dataset,
path_data_info=path_data_info)
else:
raise ValueError('dataset not supported')
sampler = data.RandomSampler(
dataset) if mode == 'train' else data.SequentialSampler(dataset)
data_loader = data.DataLoader(
dataset,
batch_size=args.batch_size,
sampler=sampler,
shuffle=False,
num_workers=num_workers,
pin_memory=True,
drop_last=(mode != 'test'
) # test always same examples independently of batch size
)
return data_loader
pytest.param(
"utils.data.sampler",
"RandomSampler",
{},
[],
{"data_source": dummy_dataset},
data.RandomSampler(data_source=dummy_dataset),
id="RandomSamplerConf",
),
pytest.param(
"utils.data.sampler",
"SequentialSampler",
{},
[],
{"data_source": dummy_dataset},
data.SequentialSampler(data_source=dummy_dataset),
id="SequentialSamplerConf",
),
pytest.param(
"utils.data.sampler",
"SubsetRandomSampler",
{"indices": [1]},
[],
{},
data.SubsetRandomSampler(indices=[1]),
id="SubsetRandomSamplerConf",
),
pytest.param(
"utils.data.sampler",
"WeightedRandomSampler",
{
print('Data has been loaded successfully, cost:%.4fs' % (t1 - t0))
########################### TRAINING STAGE ##################################
check_dir('%s/train_log' % conf.out_path)
log = Logging('%s/train_%s_nrms.log' % (conf.out_path, conf.data_name))
train_model_path = '%s/train_%s_nrms.mod' % (conf.out_path, conf.data_name)
# prepare data for the training stage
train_dataset = data_utils.TrainData(train_data)
val_dataset = data_utils.TestData(val_data)
train_batch_sampler = data.BatchSampler(data.RandomSampler(
range(train_dataset.length)),
batch_size=conf.batch_size,
drop_last=False)
val_batch_sampler = data.BatchSampler(data.SequentialSampler(
range(val_dataset.length)),
batch_size=conf.batch_size,
drop_last=True)
# Start Training !!!
max_auc = 0
for epoch in range(1, conf.train_epochs + 1):
t0 = time()
model.train()
train_loss = []
count = 0
for batch_idx_list in train_batch_sampler:
pred_input_news, his_input_news, labels = \
train_dataset._get_batch(batch_idx_list)
def _setup_dataloader_from_config(self, cfg: DictConfig, predict_last_k=0):
if cfg.get("use_tarred_dataset", False):
if cfg.get("metadata_file") is None:
raise FileNotFoundError(
"Trying to use tarred data set but could not find metadata path in config."
)
else:
metadata_file = cfg.get('metadata_file')
with open(metadata_file) as metadata_reader:
metadata = json.load(metadata_reader)
if cfg.get('tar_files') is None:
tar_files = metadata.get('tar_files')
if tar_files is not None:
logging.info(
f'Loading from tarred dataset {tar_files}')
else:
raise FileNotFoundError(
"Could not find tarred dataset in config or metadata."
)
else:
tar_files = cfg.get('tar_files')
if metadata.get('tar_files') is not None:
raise ValueError(
'Tar files specified in config and in metadata file. Tar files should only be specified once.'
)
dataset = TarredSentenceDataset(
text_tar_filepaths=tar_files,
metadata_path=metadata_file,
tokenizer=self.tokenizer,
shuffle_n=cfg.get("tar_shuffle_n", 100),
shard_strategy=cfg.get("shard_strategy", "scatter"),
global_rank=self.global_rank,
world_size=self.world_size,
)
return torch.utils.data.DataLoader(
dataset=dataset,
batch_size=1,
num_workers=cfg.get("num_workers", 2),
pin_memory=cfg.get("pin_memory", False),
drop_last=cfg.get("drop_last", False),
)
else:
dataset = SentenceDataset(
tokenizer=self.tokenizer,
dataset=cfg.file_name,
tokens_in_batch=cfg.tokens_in_batch,
clean=cfg.get("clean", False),
max_seq_length=cfg.get("max_seq_length", 512),
min_seq_length=cfg.get("min_seq_length", 1),
cache_ids=cfg.get("cache_ids", False),
)
if cfg.shuffle:
sampler = pt_data.RandomSampler(dataset)
else:
sampler = pt_data.SequentialSampler(dataset)
return torch.utils.data.DataLoader(
dataset=dataset,
batch_size=1,
sampler=sampler,
num_workers=cfg.get("num_workers", 2),
pin_memory=cfg.get("pin_memory", False),
drop_last=cfg.get("drop_last", False),
)
train_data, val_data = data_utils.load_all()
t1 = time()
print('Data has been loaded successfully, cost:%.4fs' % (t1 - t0))
########################### TRAINING STAGE ##################################
check_dir('%s/train_log' % conf.out_path)
log = Logging('%s/train_%s_nrms.log' % (conf.out_path, conf.data_name))
train_model_path = '%s/train_%s_nrms.mod' % (conf.out_path, conf.data_name)
# prepare data for the training stage
train_dataset = data_utils.TrainData(train_data)
val_dataset = data_utils.TestData(val_data)
train_batch_sampler = data.BatchSampler(data.RandomSampler(
range(train_dataset.length)), batch_size=conf.batch_size, drop_last=False)
val_batch_sampler = data.BatchSampler(data.SequentialSampler(
range(val_dataset.length)), batch_size=conf.batch_size, drop_last=True)
# Start Training !!!
max_auc = 0
for epoch in range(1, conf.train_epochs+1):
t0 = time()
model.train()
train_loss = []
count = 0
for batch_idx_list in train_batch_sampler:
his_input_title, pred_input_title, labels = \
train_dataset._get_batch(batch_idx_list)
obj_loss = model(his_input_title, pred_input_title, labels)
train_loss.append(obj_loss.item())
def _setup_dataloader_from_config(self, cfg: DictConfig):
if cfg.get("use_tarred_dataset", False):
if cfg.get("metadata_file") is None:
raise FileNotFoundError(
"Trying to use tarred data set but could not find metadata path in config."
)
metadata_file_list = cfg.get('metadata_file')
tar_files_list = cfg.get('tar_files', None)
if isinstance(metadata_file_list, str):
metadata_file_list = [metadata_file_list]
if tar_files_list is not None and isinstance(tar_files_list, str):
tar_files_list = [tar_files_list]
if tar_files_list is not None and len(tar_files_list) != len(
metadata_file_list):
raise ValueError(
'The config must have the same number of tarfile paths and metadata file paths.'
)
datasets = []
for idx, metadata_file in enumerate(metadata_file_list):
with open(metadata_file) as metadata_reader:
metadata = json.load(metadata_reader)
if tar_files_list is None:
tar_files = metadata.get('tar_files')
if tar_files is not None:
logging.info(
f'Loading from tarred dataset {tar_files}')
else:
tar_files = tar_files_list[idx]
if metadata.get('tar_files') is not None:
logging.info(
f'Tar file paths found in both cfg and metadata using one in cfg by default - {tar_files}'
)
dataset = TarredTranslationDataset(
text_tar_filepaths=tar_files,
metadata_path=metadata_file,
encoder_tokenizer=self.encoder_tokenizer,
decoder_tokenizer=self.decoder_tokenizer,
shuffle_n=cfg.get("tar_shuffle_n", 100),
shard_strategy=cfg.get("shard_strategy", "scatter"),
global_rank=self.global_rank,
world_size=self.world_size,
reverse_lang_direction=cfg.get("reverse_lang_direction",
False),
prepend_id=self.multilingual_ids[idx]
if self.multilingual else None,
)
datasets.append(dataset)
if len(datasets) > 1:
dataset = ConcatDataset(
datasets=datasets,
sampling_technique=cfg.get('concat_sampling_technique'),
sampling_temperature=cfg.get(
'concat_sampling_temperature'),
sampling_probabilities=cfg.get(
'concat_sampling_probabilities'),
global_rank=self.global_rank,
world_size=self.world_size,
)
else:
dataset = datasets[0]
else:
src_file_list = cfg.src_file_name
tgt_file_list = cfg.tgt_file_name
if isinstance(src_file_list, str):
src_file_list = [src_file_list]
if isinstance(tgt_file_list, str):
tgt_file_list = [tgt_file_list]
if len(src_file_list) != len(tgt_file_list):
raise ValueError(
'The same number of filepaths must be passed in for source and target.'
)
datasets = []
for idx, src_file in enumerate(src_file_list):
dataset = TranslationDataset(
dataset_src=str(Path(src_file).expanduser()),
dataset_tgt=str(Path(tgt_file_list[idx]).expanduser()),
tokens_in_batch=cfg.tokens_in_batch,
clean=cfg.get("clean", False),
max_seq_length=cfg.get("max_seq_length", 512),
min_seq_length=cfg.get("min_seq_length", 1),
max_seq_length_diff=cfg.get("max_seq_length_diff", 512),
max_seq_length_ratio=cfg.get("max_seq_length_ratio", 512),
cache_ids=cfg.get("cache_ids", False),
cache_data_per_node=cfg.get("cache_data_per_node", False),
use_cache=cfg.get("use_cache", False),
reverse_lang_direction=cfg.get("reverse_lang_direction",
False),
prepend_id=self.multilingual_ids[idx]
if self.multilingual else None,
)
dataset.batchify(self.encoder_tokenizer,
self.decoder_tokenizer)
datasets.append(dataset)
if len(datasets) > 1:
dataset = ConcatDataset(
datasets=datasets,
shuffle=cfg.get('shuffle'),
sampling_technique=cfg.get('concat_sampling_technique'),
sampling_temperature=cfg.get(
'concat_sampling_temperature'),
sampling_probabilities=cfg.get(
'concat_sampling_probabilities'),
global_rank=self.global_rank,
world_size=self.world_size,
)
else:
dataset = datasets[0]
if cfg.shuffle:
sampler = pt_data.RandomSampler(dataset)
else:
sampler = pt_data.SequentialSampler(dataset)
return torch.utils.data.DataLoader(
dataset=dataset,
batch_size=1,
sampler=None if cfg.get("use_tarred_dataset", False) else sampler,
num_workers=cfg.get("num_workers", 2),
pin_memory=cfg.get("pin_memory", False),
drop_last=cfg.get("drop_last", False),
)
def main(args):
utils.init_distributed_mode(args)
device = torch.device(args.gpus)
in_chns = 3
if args.vision_type == 'monochromat':
in_chns = 1
elif 'dichromat' in args.vision_type:
in_chns = 2
data_reading_kwargs = {
'target_size': args.target_size,
'colour_vision': args.vision_type,
'colour_space': args.colour_space
}
dataset, num_classes = utils.get_dataset(args.dataset, args.data_dir,
'train', **data_reading_kwargs)
json_file_name = os.path.join(args.out_dir, 'args.json')
with open(json_file_name, 'w') as fp:
json.dump(dict(args._get_kwargs()), fp, sort_keys=True, indent=4)
dataset_test, _ = utils.get_dataset(args.dataset, args.data_dir, 'val',
**data_reading_kwargs)
if args.distributed:
train_sampler = torch_dist.DistributedSampler(dataset)
test_sampler = torch_dist.DistributedSampler(dataset_test)
else:
train_sampler = torch_data.RandomSampler(dataset)
test_sampler = torch_data.SequentialSampler(dataset_test)
data_loader = torch_data.DataLoader(dataset,
batch_size=args.batch_size,
sampler=train_sampler,
num_workers=args.workers,
collate_fn=utils.collate_fn,
drop_last=True)
data_loader_test = torch_data.DataLoader(dataset_test,
batch_size=1,
sampler=test_sampler,
num_workers=args.workers,
collate_fn=utils.collate_fn)
if args.network_name == 'unet':
model = segmentation_models.unet.model.Unet(
encoder_weights=args.backbone, classes=num_classes)
if args.pretrained:
print('Loading %s' % args.pretrained)
checkpoint = torch.load(args.pretrained, map_location='cpu')
remove_keys = []
for key_ind, key in enumerate(checkpoint['state_dict'].keys()):
if 'segmentation_head' in key:
remove_keys.append(key)
for key in remove_keys:
del checkpoint['state_dict'][key]
model.load_state_dict(checkpoint['state_dict'], strict=False)
elif args.custom_arch:
print('Custom model!')
backbone_name, customs = model_utils.create_custom_resnet(
args.backbone, None)
if customs is not None:
args.backbone = {'arch': backbone_name, 'customs': customs}
model = custom_models.__dict__[args.network_name](
args.backbone, num_classes=num_classes, aux_loss=args.aux_loss)
if args.pretrained:
print('Loading %s' % args.pretrained)
checkpoint = torch.load(args.pretrained, map_location='cpu')
num_all_keys = len(checkpoint['state_dict'].keys())
remove_keys = []
for key_ind, key in enumerate(checkpoint['state_dict'].keys()):
if key_ind > (num_all_keys - 3):
remove_keys.append(key)
for key in remove_keys:
del checkpoint['state_dict'][key]
pretrained_weights = OrderedDict(
(k.replace('segmentation_model.', ''), v)
for k, v in checkpoint['state_dict'].items())
model.load_state_dict(pretrained_weights, strict=False)
else:
model = seg_models.__dict__[args.network_name](
num_classes=num_classes,
aux_loss=args.aux_loss,
pretrained=args.pretrained)
model.to(device)
if args.distributed:
model = torch.nn.SyncBatchNorm.convert_sync_batchnorm(model)
best_iou = 0
model_progress = []
model_progress_path = os.path.join(args.out_dir, 'model_progress.csv')
# loading the model if to eb resumed
if args.resume is not None:
checkpoint = torch.load(args.resume, map_location='cpu')
model.load_state_dict(checkpoint['model'])
best_iou = checkpoint['best_iou']
# if model progress exists, load it
if os.path.exists(model_progress_path):
model_progress = np.loadtxt(model_progress_path, delimiter=',')
model_progress = model_progress.tolist()
master_model = model
if args.distributed:
model = torch.nn.parallel.DistributedDataParallel(
model, device_ids=[args.gpus])
master_model = model.module
if args.network_name == 'unet':
params_to_optimize = model.parameters()
else:
params_to_optimize = [
{
'params': [
p for p in master_model.backbone.parameters()
if p.requires_grad
]
},
{
'params': [
p for p in master_model.classifier.parameters()
if p.requires_grad
]
},
]
if args.aux_loss:
params = [
p for p in master_model.aux_classifier.parameters()
if p.requires_grad
]
params_to_optimize.append({'params': params, 'lr': args.lr * 10})
optimizer = torch.optim.SGD(params_to_optimize,
lr=args.lr,
momentum=args.momentum,
weight_decay=args.weight_decay)
lr_lambda = lambda x: (1 - x / (len(data_loader) * args.epochs))**0.9
lr_scheduler = torch.optim.lr_scheduler.LambdaLR(optimizer, lr_lambda)
criterion = select_criterion(args.dataset)
start_time = time.time()
for epoch in range(args.initial_epoch, args.epochs):
if args.distributed:
train_sampler.set_epoch(epoch)
train_log = train_one_epoch(model, criterion, optimizer, data_loader,
lr_scheduler, device, epoch,
args.print_freq)
val_confmat = utils.evaluate(model,
data_loader_test,
device=device,
num_classes=num_classes)
val_log = val_confmat.get_log_dict()
is_best = val_log['iou'] > best_iou
best_iou = max(best_iou, val_log['iou'])
model_data = {
'epoch': epoch + 1,
'arch': args.network_name,
'customs': {
'aux_loss': args.aux_loss,
'pooling_type': args.pooling_type,
'in_chns': in_chns,
'num_classes': num_classes,
'backbone': args.backbone
},
'state_dict': master_model.state_dict(),
'optimizer': optimizer.state_dict(),
'target_size': args.target_size,
'args': args,
'best_iou': best_iou,
}
utils.save_on_master(model_data,
os.path.join(args.out_dir, 'checkpoint.pth'))
if is_best:
utils.save_on_master(model_data,
os.path.join(args.out_dir, 'model_best.pth'))
epoch_prog, header = add_to_progress(train_log, [], '')
epoch_prog, header = add_to_progress(val_log,
epoch_prog,
header,
prefix='v_')
model_progress.append(epoch_prog)
np.savetxt(model_progress_path,
np.array(model_progress),
delimiter=';',
header=header,
fmt='%s')
total_time = time.time() - start_time
total_time_str = str(datetime.timedelta(seconds=int(total_time)))
print('Training time {}'.format(total_time_str))
def _setup_eval_dataloader_from_config(self, cfg: DictConfig):
src_file_name = cfg.get('src_file_name')
tgt_file_name = cfg.get('tgt_file_name')
if src_file_name is None or tgt_file_name is None:
raise ValueError(
'Validation dataloader needs both cfg.src_file_name and cfg.tgt_file_name to not be None.'
)
else:
# convert src_file_name and tgt_file_name to list of strings
if isinstance(src_file_name, str):
src_file_list = [src_file_name]
elif isinstance(src_file_name, ListConfig):
src_file_list = src_file_name
else:
raise ValueError(
"cfg.src_file_name must be string or list of strings")
if isinstance(tgt_file_name, str):
tgt_file_list = [tgt_file_name]
elif isinstance(tgt_file_name, ListConfig):
tgt_file_list = tgt_file_name
else:
raise ValueError(
"cfg.tgt_file_name must be string or list of strings")
if len(src_file_list) != len(tgt_file_list):
raise ValueError(
'The same number of filepaths must be passed in for source and target validation.'
)
dataloaders = []
prepend_idx = 0
for idx, src_file in enumerate(src_file_list):
if self.multilingual:
prepend_idx = idx
dataset = TranslationDataset(
dataset_src=str(Path(src_file).expanduser()),
dataset_tgt=str(Path(tgt_file_list[idx]).expanduser()),
tokens_in_batch=cfg.tokens_in_batch,
clean=cfg.get("clean", False),
max_seq_length=cfg.get("max_seq_length", 512),
min_seq_length=cfg.get("min_seq_length", 1),
max_seq_length_diff=cfg.get("max_seq_length_diff", 512),
max_seq_length_ratio=cfg.get("max_seq_length_ratio", 512),
cache_ids=cfg.get("cache_ids", False),
cache_data_per_node=cfg.get("cache_data_per_node", False),
use_cache=cfg.get("use_cache", False),
reverse_lang_direction=cfg.get("reverse_lang_direction",
False),
prepend_id=self.multilingual_ids[prepend_idx]
if self.multilingual else None,
)
dataset.batchify(self.encoder_tokenizer, self.decoder_tokenizer)
if cfg.shuffle:
sampler = pt_data.RandomSampler(dataset)
else:
sampler = pt_data.SequentialSampler(dataset)
dataloader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=1,
sampler=sampler,
num_workers=cfg.get("num_workers", 2),
pin_memory=cfg.get("pin_memory", False),
drop_last=cfg.get("drop_last", False),
)
dataloaders.append(dataloader)
return dataloaders