def read(self):
hdf5_file = read(self.input_file_path)
group = hdf5_file[GROUP_SIMULATION]
self.version = group.attrs[ATTRIBUTE_VERSION]
logger.info("File version: {}".format(self.version))
self.options.read(group)
self.results.read(group)
def test_read():
file_path = get_current_module_path(__file__,
"../../../test_data/test_Source.hdf5")
if not os.path.isfile(file_path): # pragma: no cover
pytest.skip("File does not exist: {}".format(file_path))
hdf5_file = read(file_path)
source = Source()
source.read(hdf5_file)
_compare_values(source)
def test_read():
file_path = get_current_module_path(
__file__, "../../../test_data/test_Element.hdf5")
if not os.path.isfile(file_path): # pragma: no cover
pytest.skip("File does not exist: {}".format(file_path))
hdf5_file = read(file_path)
element = Element()
element.read(hdf5_file)
assert element != get_vacuum_element()
assert element == get_silicon_element()
def test_read():
file_path = get_current_module_path(
__file__, "../../../test_data/test_Material.hdf5")
if not os.path.isfile(file_path): # pragma: no cover
pytest.skip("File does not exist: {}".format(file_path))
hdf5_file = read(file_path)
material = Material()
material.read(hdf5_file)
assert material != get_vacuum_material()
assert material == get_silicon_material()
def test_write(tmpdir):
file_path = tmpdir.join("output.hdf5")
point = Point(-1, -2, -3)
hdf5_file = write(file_path)
point.write(hdf5_file)
hdf5_file.close()
point = Point(1, 2, 3)
hdf5_file = read(file_path)
point.read(hdf5_file)
assert point.x == -1
assert point.y == -2
assert point.z == -3
def test_write(tmpdir):
file_path = tmpdir.join("output.hdf5")
element = get_silicon_element()
hdf5_file = write(file_path)
element.write(hdf5_file)
hdf5_file.close()
element = Element()
hdf5_file = read(file_path)
element.read(hdf5_file)
assert element != get_vacuum_element()
assert element == get_silicon_element()
def test_point_read():
file_path = get_current_module_path(__file__, "../../test_data/test_Point.hdf5")
if not os.path.isfile(file_path): # pragma: no cover
pytest.skip("File does not exist: {}".format(file_path))
hdf5_file = read(file_path)
point = Point(0, 0, 0)
assert point.x != 1
assert point.y != 2
assert point.z != 3
point.read(hdf5_file)
assert point.x == 1
assert point.y == 2
assert point.z == 3
def test_write(tmpdir):
file_path = tmpdir.join("output.hdf5")
material = get_silicon_material()
hdf5_file = write(file_path)
material.write(hdf5_file)
hdf5_file.close()
material = Material()
hdf5_file = read(file_path)
material.read(hdf5_file)
assert material != get_vacuum_material()
material_si = get_silicon_material()
assert material == material_si
def test_write_read(tmpdir):
file_path = tmpdir.join("output.hdf5")
hdf5_file = write(file_path)
assert hdf5_file.filename == file_path
assert hdf5_file.mode == "r+"
assert hdf5_file.driver == "core"
assert hdf5_file.userblock_size == 0
hdf5_file.close()
hdf5_file = read(file_path)
assert hdf5_file.filename == file_path
assert hdf5_file.mode == "r"
assert hdf5_file.driver == "core"
assert hdf5_file.userblock_size == 0
def test_write(tmpdir):
file_path = tmpdir.join("output.hdf5")
source = Source()
source.position_nm = Point(-1, -2, -3)
source.direction = Point(0.2, 0.4, 0.6)
source.kinetic_energy_keV = 53.1156
source.mass_amu = 68.93
source.atomic_number = 31
hdf5_file = write(file_path)
source.write(hdf5_file)
hdf5_file.close()
source = Source()
hdf5_file = read(file_path)
source.read(hdf5_file)
_compare_values(source)