def write_tp_rows():
"""Write out just the first row of the transition matrix for several
TSP operators. The first row is enough since later rows are just a
rotation of the first.
"""
basename = sys.argv[1]
ops = ("two_opt", "twoh_opt", "three_opt", "three_opt_broad", "swap", "swap_adj")
lengths = (6, 7, 8, 9, 10)
for op in ops:
for length in lengths:
filename = os.path.join(basename,
"tsp_length_%d_%s" % (length, op),
"TP_row0.dat")
print op, length
x = tsp.get_tm_first_row(length, move=op)
np.savetxt(filename, x)
def write_tp_row0(space):
"""Write out just the first row of the transition matrix for several
operators of the given space. The first row is enough since later
rows are just a rotation of the first.
"""
basename = sys.argv[1]
if space == "permutation":
ops = ("two_opt", "twoh_opt", "three_opt", "three_opt_broad", "swap_two", "swap_adj")
sizes = (9, 10, 11)
elif space == "bitstring":
ops = ("per_gene", "per_ind")
pmuts = (0.0001, 0.0003, 0.0010, 0.0033, 0.01, 0.0333, 0.1, 0.3333)
sizes = (10, 12, 14)
for op in ops:
for size in sizes:
print op, size
if space == "permutation":
filename = os.path.join(basename,
"space_%s/size_%d_op_%s" % (space, size, op),
"TP_row0.dat")
x = tsp.get_tm_first_row(size, move=op)
np.savetxt(filename, x)
elif space == "bitstring":
if op == "per_ind":
filename = os.path.join(basename,
"space_%s/size_%d_op_%s" % (space, size, op),
"TP_row0.dat")
x = bitstring.generate_bitstring_tm_row0(size, pmut=None)
np.savetxt(filename, x)
elif op == "per_gene":
for pmut in pmuts:
op_ = "%s_%.4f" % (op, pmut)
filename = os.path.join(basename,
"space_%s/size_%d_op_%s" % (space, size, op_),
"TP_row0.dat")
x = bitstring.generate_bitstring_tm_row0(size, pmut=pmut)
np.savetxt(filename, x)
else:
raise ValueError("Unexpected operation + op")