def remove_datatype(self, skip_validation=False):
"""
Called when a Sensor is to be removed.
"""
if not skip_validation:
tsr = dao.get_generic_entity(TimeSeriesRegionIndex,
self.handled_datatype.gid,
"fk_region_mapping_volume_gid")
tracts = dao.get_generic_entity(TractsIndex,
self.handled_datatype.gid,
"fk_region_volume_map_gid")
error_msg = "RegionVolumeMappingIndex cannot be removed because is still used by %d %s entities."
if len(tsr) > 0:
raise RemoveDataTypeException(error_msg %
(len(tsr), "TimeSeries"))
if len(tracts) > 0:
raise RemoveDataTypeException(error_msg % (len(tsr), "Tract"))
conn_gid = self.handled_datatype.fk_connectivity_gid
conn_measure_list = dao.get_generic_entity(ConnectivityMeasureIndex,
conn_gid,
"fk_connectivity_gid")
others_rvm_list = dao.get_generic_entity(RegionVolumeMappingIndex,
conn_gid,
'fk_connectivity_gid')
if len(others_rvm_list) <= 1:
# Only the current RegionVolumeMappingIndex is compatible
for conn_measure_index in conn_measure_list:
if conn_measure_index.has_volume_mapping:
conn_measure_index.has_volume_mapping = False
dao.store_entity(conn_measure_index)
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Surface is to be removed.
"""
if not skip_validation:
associated_ts = dao.get_generic_entity(TimeSeriesVolumeIndex,
self.handled_datatype.gid,
'fk_volume_gid')
associated_rvm = dao.get_generic_entity(RegionVolumeMappingIndex,
self.handled_datatype.gid,
'fk_volume_gid')
associated_s_mri = dao.get_generic_entity(
StructuralMRIIndex, self.handled_datatype.gid, 'fk_volume_gid')
error_msg = "Volume cannot be removed because is still used by a "
if len(associated_ts) > 0:
raise RemoveDataTypeException(error_msg + " TimeSeriesVolume.")
if len(associated_rvm) > 0:
raise RemoveDataTypeException(error_msg +
" RegionVolumeMapping.")
if len(associated_s_mri) > 0:
raise RemoveDataTypeException(error_msg + " StructuralMRI.")
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Surface is to be removed.
"""
if not skip_validation:
associated_ts = dao.get_generic_entity(TimeSeriesSurfaceIndex, self.handled_datatype.gid, 'fk_surface_gid')
associated_rm = dao.get_generic_entity(RegionMappingIndex, self.handled_datatype.gid, 'fk_surface_gid')
associated_lc = dao.get_generic_entity(LocalConnectivityIndex, self.handled_datatype.gid, 'fk_surface_gid')
associated_stim = dao.get_generic_entity(StimuliSurfaceIndex, self.handled_datatype.gid, 'fk_surface_gid')
associated_pms = dao.get_generic_entity(ProjectionMatrixIndex, self.handled_datatype.gid,
'fk_brain_skull_gid')
associated_pms.extend(dao.get_generic_entity(ProjectionMatrixIndex, self.handled_datatype.gid,
'fk_skull_skin_gid'))
associated_pms.extend(dao.get_generic_entity(ProjectionMatrixIndex, self.handled_datatype.gid,
'fk_skin_air_gid'))
associated_pms.extend(dao.get_generic_entity(ProjectionMatrixIndex, self.handled_datatype.gid,
'fk_source_gid'))
error_msg = "Surface cannot be removed because is still used by %d %s entities "
if len(associated_ts) > 0:
raise RemoveDataTypeException(error_msg % (len(associated_ts), "TimeSeriesSurface"))
if len(associated_rm) > 0:
raise RemoveDataTypeException(error_msg % (len(associated_rm), "RegionMapping"))
if len(associated_lc) > 0:
raise RemoveDataTypeException(error_msg % (len(associated_lc), " LocalConnectivity"))
if len(associated_stim) > 0:
raise RemoveDataTypeException(error_msg % (len(associated_stim), "StimuliSurface"))
if len(associated_pms) > 0:
raise RemoveDataTypeException(error_msg % (len(associated_pms), "ProjectionMatrix"))
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Surface is to be removed.
"""
if not skip_validation:
associated_ts = dao.get_generic_entity(TimeSeriesSurface,
self.handled_datatype.gid,
'_surface')
associated_rm = dao.get_generic_entity(RegionMapping,
self.handled_datatype.gid,
'_surface')
associated_lc = dao.get_generic_entity(LocalConnectivity,
self.handled_datatype.gid,
'_surface')
associated_stim = dao.get_generic_entity(StimuliSurfaceData,
self.handled_datatype.gid,
'_surface')
error_msg = "Surface cannot be removed because is still used by a "
if len(associated_ts) > 0:
raise RemoveDataTypeException(error_msg +
" TimeSeriesSurface.")
if len(associated_rm) > 0:
raise RemoveDataTypeException(error_msg + " RegionMapping.")
if len(associated_lc) > 0:
raise RemoveDataTypeException(error_msg +
" LocalConnectivity.")
if len(associated_stim) > 0:
raise RemoveDataTypeException(error_msg +
" StimuliSurfaceData.")
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation = False):
"""
Called when a TimeSeries is removed.
"""
associated_cv = dao.get_generic_entity(Covariance, self.handled_datatype.gid, '_source')
associated_pca = dao.get_generic_entity(PrincipalComponents, self.handled_datatype.gid, '_source')
associated_is = dao.get_generic_entity(IndependentComponents, self.handled_datatype.gid, '_source')
associated_cc = dao.get_generic_entity(CrossCorrelation, self.handled_datatype.gid, '_source')
associated_fr = dao.get_generic_entity(FourierSpectrum, self.handled_datatype.gid, '_source')
associated_wv = dao.get_generic_entity(WaveletCoefficients, self.handled_datatype.gid, '_source')
associated_cs = dao.get_generic_entity(CoherenceSpectrum, self.handled_datatype.gid, '_source')
associated_dm = dao.get_generic_entity(DatatypeMeasure, self.handled_datatype.gid, '_analyzed_datatype')
for datatype_measure in associated_dm:
datatype_measure._analyed_datatype = None
dao.store_entity(datatype_measure)
msg = "TimeSeries cannot be removed as it is used by at least one "
if not skip_validation:
if len(associated_cv) > 0:
raise RemoveDataTypeException(msg + " Covariance.")
if len(associated_pca) > 0:
raise RemoveDataTypeException(msg + " PrincipalComponents.")
if len(associated_is) > 0:
raise RemoveDataTypeException(msg + " IndependentComponents.")
if len(associated_cc) > 0:
raise RemoveDataTypeException(msg + " CrossCorrelation.")
if len(associated_fr) > 0:
raise RemoveDataTypeException(msg + " FourierSpectrum.")
if len(associated_wv) > 0:
raise RemoveDataTypeException(msg + " WaveletCoefficients.")
if len(associated_cs) > 0:
raise RemoveDataTypeException(msg + " CoherenceSpectrum.")
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Connectivity is to be removed.
"""
key = 'fk_connectivity_gid'
if not skip_validation:
associated_ts = dao.get_generic_entity(TimeSeriesRegionIndex, self.handled_datatype.gid, key)
associated_rm = dao.get_generic_entity(RegionMappingIndex, self.handled_datatype.gid, key)
associated_stim = dao.get_generic_entity(StimuliRegionIndex, self.handled_datatype.gid, key)
associated_mes = dao.get_generic_entity(ConnectivityMeasureIndex, self.handled_datatype.gid, key)
associated_rvm = dao.get_generic_entity(RegionVolumeMappingIndex, self.handled_datatype.gid, key)
msg = "Connectivity cannot be removed as it is used by at least one "
if len(associated_ts) > 0:
raise RemoveDataTypeException(msg + " TimeSeriesRegion.")
if len(associated_rm) > 0:
raise RemoveDataTypeException(msg + " RegionMapping.")
if len(associated_stim) > 0:
raise RemoveDataTypeException(msg + " StimuliRegion.")
if len(associated_mes) > 0:
raise RemoveDataTypeException(msg + " ConnectivityMeasure.")
if len(associated_rvm) > 0:
raise RemoveDataTypeException(msg + " RegionVolumeMapping.")
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Connectivity is to be removed.
"""
if not skip_validation:
associated_ts = dao.get_generic_entity(TimeSeriesRegion, self.handled_datatype.gid, '_connectivity')
associated_rm = dao.get_generic_entity(RegionMapping, self.handled_datatype.gid, '_connectivity')
associated_stim = dao.get_generic_entity(StimuliRegion, self.handled_datatype.gid, '_connectivity')
associated_mes = dao.get_generic_entity(ConnectivityMeasure, self.handled_datatype.gid, '_connectivity')
msg = "Connectivity cannot be removed as it is used by at least one "
if len(associated_ts) > 0:
raise RemoveDataTypeException(msg + " TimeSeriesRegion.")
if len(associated_rm) > 0:
raise RemoveDataTypeException(msg + " RegionMapping.")
if len(associated_stim) > 0:
raise RemoveDataTypeException(msg + " StimuliRegion.")
if len(associated_mes) > 0:
raise RemoveDataTypeException(msg + " ConnectivityMeasure.")
#### Update child Connectivities, if any.
child_conns = dao.get_generic_entity(Connectivity, self.handled_datatype.gid, '_parent_connectivity')
if len(child_conns) > 0:
for one_conn in child_conns[1:]:
one_conn.parent_connectivity = child_conns[0].gid
if child_conns and child_conns[0]:
child_conns[0].parent_connectivity = self.handled_datatype.parent_connectivity
for one_child in child_conns:
dao.store_entity(one_child)
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Sensor is to be removed.
"""
if not skip_validation:
tsr = dao.get_generic_entity(TimeSeriesRegionIndex, self.handled_datatype.gid, self.FIELD_NAME)
error_msg = "%s cannot be removed because is still used by %d TimeSeries Region entities."
if tsr:
raise RemoveDataTypeException(error_msg % (self.CLASS_NAME, len(tsr)))
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Sensor is to be removed.
"""
if not skip_validation:
tsr = dao.get_generic_entity(TimeSeriesRegion, self.handled_datatype.gid, self.FIELD_NAME)
error_msg = "%s cannot be removed because is still used by %d TimeSeries Region entities."
if tsr:
raise RemoveDataTypeException(error_msg % (self.CLASS_NAME, len(tsr)))
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Sensor is to be removed.
"""
if not skip_validation:
projection_matrices = dao.get_generic_entity(ProjectionMatrix, self.handled_datatype.gid, '_sensors')
error_msg = "Sensor cannot be removed because is still used by %d Projection Matrix entities."
if projection_matrices:
raise RemoveDataTypeException(error_msg % len(projection_matrices))
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a TimeSeries is removed.
"""
if not skip_validation:
associated_cv = dao.get_generic_entity(Covariance,
self.handled_datatype.gid,
'_source')
associated_pca = dao.get_generic_entity(PrincipalComponents,
self.handled_datatype.gid,
'_source')
associated_is = dao.get_generic_entity(IndependentComponents,
self.handled_datatype.gid,
'_source')
associated_cc = dao.get_generic_entity(CrossCorrelation,
self.handled_datatype.gid,
'_source')
associated_fr = dao.get_generic_entity(FourierSpectrum,
self.handled_datatype.gid,
'_source')
associated_wv = dao.get_generic_entity(WaveletCoefficients,
self.handled_datatype.gid,
'_source')
associated_cs = dao.get_generic_entity(CoherenceSpectrum,
self.handled_datatype.gid,
'_source')
msg = "TimeSeries cannot be removed as it is used by at least one "
if len(associated_cv) > 0:
raise RemoveDataTypeException(msg + " Covariance.")
if len(associated_pca) > 0:
raise RemoveDataTypeException(msg + " PrincipalComponents.")
if len(associated_is) > 0:
raise RemoveDataTypeException(msg + " IndependentComponents.")
if len(associated_cc) > 0:
raise RemoveDataTypeException(msg + " CrossCorrelation.")
if len(associated_fr) > 0:
raise RemoveDataTypeException(msg + " FourierSpectrum.")
if len(associated_wv) > 0:
raise RemoveDataTypeException(msg + " WaveletCoefficients.")
if len(associated_cs) > 0:
raise RemoveDataTypeException(msg + " CoherenceSpectrum.")
# todo: reconsider this. Possibly remove measures
associated_dm = dao.get_generic_entity(DatatypeMeasure,
self.handled_datatype.gid,
'_analyzed_datatype')
for datatype_measure in associated_dm:
datatype_measure._analyed_datatype = None
dao.store_entity(datatype_measure)
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Sensor is to be removed.
"""
if not skip_validation:
projection_matrices = dao.get_generic_entity(
ProjectionMatrix, self.handled_datatype.gid, '_sensors')
error_msg = "Sensor cannot be removed because is still used by %d Projection Matrix entities."
if projection_matrices:
raise RemoveDataTypeException(error_msg %
len(projection_matrices))
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Sensor is to be removed.
"""
if not skip_validation:
projection_matrices_brain = dao.get_generic_entity(
ProjectionMatrixIndex, self.handled_datatype.gid,
'fk_brain_skull_gid')
projection_matrices_skull = dao.get_generic_entity(
ProjectionMatrixIndex, self.handled_datatype.gid,
'fk_skull_skin_gid')
projection_matrices_skin = dao.get_generic_entity(
ProjectionMatrixIndex, self.handled_datatype.gid,
'fk_skin_air_gid')
projection_matrices_source = dao.get_generic_entity(
ProjectionMatrixIndex, self.handled_datatype.gid,
'fk_source_gid')
projection_matrices_sensors = dao.get_generic_entity(
ProjectionMatrixIndex, self.handled_datatype.gid,
'fk_sensors_gid')
ts_seeg = dao.get_generic_entity(TimeSeriesSEEGIndex,
self.handled_datatype.gid,
'fk_sensors_gid')
ts_meg = dao.get_generic_entity(TimeSeriesMEGIndex,
self.handled_datatype.gid,
'fk_sensors_gid')
ts_eeg = dao.get_generic_entity(TimeSeriesEEGIndex,
self.handled_datatype.gid,
'fk_sensors_gid')
error_msg = "Cannot be removed as it is used by at least one "
if len(projection_matrices_brain) > 0:
raise RemoveDataTypeException(error_msg + " Brain Skull.")
if len(projection_matrices_skull) > 0:
raise RemoveDataTypeException(error_msg + " Skull Skin.")
if len(projection_matrices_skin) > 0:
raise RemoveDataTypeException(error_msg + " Skin Air.")
if len(projection_matrices_source) > 0:
raise RemoveDataTypeException(error_msg + " TimeSeriesSEEG.")
if len(ts_seeg) > 0:
raise RemoveDataTypeException(error_msg + " TimeSeriesMEG.")
if len(ts_meg) > 0:
raise RemoveDataTypeException(error_msg + " TimeSeriesEEG.")
if len(ts_eeg) > 0:
raise RemoveDataTypeException(error_msg + " Source.")
if len(projection_matrices_sensors) > 0:
raise RemoveDataTypeException(error_msg %
len(projection_matrices_sensors))
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation = False):
"""
Called when a Surface is to be removed.
"""
if not skip_validation:
associated_ts = dao.get_generic_entity(TimeSeriesVolume, self.handled_datatype.gid, '_volume')
associated_stim = dao.get_generic_entity(SpatialPatternVolume, self.handled_datatype.gid, '_volume')
error_msg = "Surface cannot be removed because is still used by a "
if len(associated_ts) > 0:
raise RemoveDataTypeException(error_msg + " TimeSeriesVolume.")
if len(associated_stim) > 0:
raise RemoveDataTypeException(error_msg + " SpatialPatternVolume.")
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Surface is to be removed.
"""
if not skip_validation:
associated_ts = dao.get_generic_entity(TimeSeriesVolume, self.handled_datatype.gid, '_volume')
associated_stim = dao.get_generic_entity(SpatialPatternVolume, self.handled_datatype.gid, '_volume')
error_msg = "Surface cannot be removed because is still used by a "
if len(associated_ts) > 0:
raise RemoveDataTypeException(error_msg + " TimeSeriesVolume.")
if len(associated_stim) > 0:
raise RemoveDataTypeException(error_msg + " SpatialPatternVolume.")
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Connectivity is to be removed.
"""
if not skip_validation:
associated_ts = dao.get_generic_entity(TimeSeriesRegion,
self.handled_datatype.gid,
'_connectivity')
associated_rm = dao.get_generic_entity(RegionMapping,
self.handled_datatype.gid,
'_connectivity')
associated_stim = dao.get_generic_entity(StimuliRegion,
self.handled_datatype.gid,
'_connectivity')
associated_mes = dao.get_generic_entity(ConnectivityMeasure,
self.handled_datatype.gid,
'_connectivity')
msg = "Connectivity cannot be removed as it is used by at least one "
if len(associated_ts) > 0:
raise RemoveDataTypeException(msg + " TimeSeriesRegion.")
if len(associated_rm) > 0:
raise RemoveDataTypeException(msg + " RegionMapping.")
if len(associated_stim) > 0:
raise RemoveDataTypeException(msg + " StimuliRegion.")
if len(associated_mes) > 0:
raise RemoveDataTypeException(msg + " ConnectivityMeasure.")
#### Update child Connectivities, if any.
child_conns = dao.get_generic_entity(Connectivity,
self.handled_datatype.gid,
'_parent_connectivity')
if len(child_conns) > 0:
for one_conn in child_conns[1:]:
one_conn.parent_connectivity = child_conns[0].gid
if child_conns and child_conns[0]:
child_conns[
0].parent_connectivity = self.handled_datatype.parent_connectivity
for one_child in child_conns:
dao.store_entity(one_child)
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Surface is to be removed.
"""
if not skip_validation:
associated_ts = dao.get_generic_entity(TimeSeriesSurface, self.handled_datatype.gid, '_surface')
associated_rm = dao.get_generic_entity(RegionMapping, self.handled_datatype.gid, '_surface')
associated_lc = dao.get_generic_entity(LocalConnectivity, self.handled_datatype.gid, '_surface')
associated_stim = dao.get_generic_entity(StimuliSurface, self.handled_datatype.gid, '_surface')
error_msg = "Surface cannot be removed because is still used by a "
if len(associated_ts) > 0:
raise RemoveDataTypeException(error_msg + " TimeSeriesSurface.")
if len(associated_rm) > 0:
raise RemoveDataTypeException(error_msg + " RegionMapping.")
if len(associated_lc) > 0:
raise RemoveDataTypeException(error_msg + " LocalConnectivity.")
if len(associated_stim) > 0:
raise RemoveDataTypeException(error_msg + " StimuliSurfaceData.")
ABCRemover.remove_datatype(self, skip_validation)
def remove_datatype(self, skip_validation=False):
"""
Called when a Sensor is to be removed.
"""
if not skip_validation:
key = 'fk_sensors_gid'
projection_matrices_sensors = dao.get_generic_entity(ProjectionMatrixIndex, self.handled_datatype.gid, key)
ts_seeg = dao.get_generic_entity(TimeSeriesSEEGIndex, self.handled_datatype.gid, key)
ts_meg = dao.get_generic_entity(TimeSeriesMEGIndex, self.handled_datatype.gid, key)
ts_eeg = dao.get_generic_entity(TimeSeriesEEGIndex, self.handled_datatype.gid, key)
error_msg = "Cannot be removed as it is used by %d %s entities."
if len(ts_seeg) > 0:
raise RemoveDataTypeException(error_msg % (len(ts_seeg),"TimeSeriesSEEG"))
if len(ts_meg) > 0:
raise RemoveDataTypeException(error_msg % (len(ts_meg),"TimeSeriesMEG"))
if len(ts_eeg) > 0:
raise RemoveDataTypeException(error_msg % (len(ts_eeg),"TimeSeriesEEG"))
if len(projection_matrices_sensors) > 0:
raise RemoveDataTypeException(error_msg % (len(projection_matrices_sensors),"ProjectionMatrix"))
ABCRemover.remove_datatype(self, skip_validation)
def __init__(self, handled_datatype):
ABCRemover.__init__(self, handled_datatype)
def __init__(self, handled_datatype):
ABCRemover.__init__(self, handled_datatype)
def remove_datatype(self, skip_validation=False):
"""
Called when a TimeSeries is removed.
"""
if not skip_validation:
key = 'fk_source_gid'
associated_fcd = dao.get_generic_entity(FcdIndex,
self.handled_datatype.gid,
key)
associated_cv = dao.get_generic_entity(CovarianceIndex,
self.handled_datatype.gid,
key)
associated_pca = dao.get_generic_entity(PrincipalComponentsIndex,
self.handled_datatype.gid,
key)
associated_is = dao.get_generic_entity(IndependentComponentsIndex,
self.handled_datatype.gid,
key)
associated_cc = dao.get_generic_entity(CrossCorrelationIndex,
self.handled_datatype.gid,
key)
associated_fr = dao.get_generic_entity(FourierSpectrumIndex,
self.handled_datatype.gid,
key)
associated_wv = dao.get_generic_entity(WaveletCoefficientsIndex,
self.handled_datatype.gid,
key)
associated_cs = dao.get_generic_entity(CoherenceSpectrumIndex,
self.handled_datatype.gid,
key)
associated_coef = dao.get_generic_entity(
CorrelationCoefficientsIndex, self.handled_datatype.gid, key)
associated_dtm = dao.get_generic_entity(DatatypeMeasureIndex,
self.handled_datatype.gid,
key)
associated_ccs = dao.get_generic_entity(
ComplexCoherenceSpectrumIndex, self.handled_datatype.gid, key)
msg = "TimeSeries cannot be removed as it is used by at least one "
if len(associated_fcd) > 0:
raise RemoveDataTypeException(msg + " FCD.")
if len(associated_cv) > 0:
raise RemoveDataTypeException(msg + " Covariance.")
if len(associated_pca) > 0:
raise RemoveDataTypeException(msg + " PrincipalComponents.")
if len(associated_is) > 0:
raise RemoveDataTypeException(msg + " IndependentComponents.")
if len(associated_cc) > 0:
raise RemoveDataTypeException(msg + " CrossCorrelation.")
if len(associated_fr) > 0:
raise RemoveDataTypeException(msg + " FourierSpectrum.")
if len(associated_wv) > 0:
raise RemoveDataTypeException(msg + " WaveletCoefficients.")
if len(associated_cs) > 0:
raise RemoveDataTypeException(msg + " CoherenceSpectrum.")
if len(associated_coef) > 0:
raise RemoveDataTypeException(msg + " CorrelationCoefficient.")
if len(associated_dtm) > 0:
raise RemoveDataTypeException(msg + " DatatypeMeasure.")
if len(associated_ccs) > 0:
raise RemoveDataTypeException(msg +
" ComplexCoherenceSpectrum.")
ABCRemover.remove_datatype(self, skip_validation)