def __init__(self, prefix=''):
super(SigmoidalJansenRitForm, self).__init__(prefix)
self.cmin = ArrayField(SigmoidalJansenRit.cmin, self)
self.cmax = ArrayField(SigmoidalJansenRit.cmax, self)
self.midpoint = ArrayField(SigmoidalJansenRit.midpoint, self)
self.r = ArrayField(SigmoidalJansenRit.r, self)
self.a = ArrayField(SigmoidalJansenRit.a, self)
def __init__(self, are_voi_disabled=False):
super(CoombesByrne2DModelForm, self).__init__(are_voi_disabled)
self.Delta = ArrayField(ModelsEnum.COOMBES_BYRNE_2D.value.Delta)
self.v_syn = ArrayField(ModelsEnum.COOMBES_BYRNE_2D.value.v_syn)
self.k = ArrayField(ModelsEnum.COOMBES_BYRNE_2D.value.k)
self.eta = ArrayField(ModelsEnum.COOMBES_BYRNE_2D.value.eta)
self.variables_of_interest = MultiSelectField(ModelsEnum.COOMBES_BYRNE_2D.value.variables_of_interest)
def __init__(self):
super(HopfieldModelForm, self).__init__()
self.taux = ArrayField(ModelsEnum.HOPFIELD.get_class().taux)
self.tauT = ArrayField(ModelsEnum.HOPFIELD.get_class().tauT)
self.dynamic = ArrayField(ModelsEnum.HOPFIELD.get_class().dynamic)
self.variables_of_interest = MultiSelectField(
ModelsEnum.HOPFIELD.get_class().variables_of_interest)
def __init__(self):
super(SigmoidalCouplingForm, self).__init__()
self.cmin = ArrayField(Sigmoidal.cmin, self.project_id)
self.cmax = ArrayField(Sigmoidal.cmax, self.project_id)
self.midpoint = ArrayField(Sigmoidal.midpoint, self.project_id)
self.a = ArrayField(Sigmoidal.a, self.project_id)
self.sigma = ArrayField(Sigmoidal.sigma, self.project_id)
def __init__(self):
super(SigmoidalCouplingForm, self).__init__()
self.cmin = ArrayField(Sigmoidal.cmin)
self.cmax = ArrayField(Sigmoidal.cmax)
self.midpoint = ArrayField(Sigmoidal.midpoint)
self.a = ArrayField(Sigmoidal.a)
self.sigma = ArrayField(Sigmoidal.sigma)
def __init__(self, prefix=''):
super(SigmoidalCouplingForm, self).__init__(prefix)
self.cmin = ArrayField(Sigmoidal.cmin, self)
self.cmax = ArrayField(Sigmoidal.cmax, self)
self.midpoint = ArrayField(Sigmoidal.midpoint, self)
self.a = ArrayField(Sigmoidal.a, self)
self.sigma = ArrayField(Sigmoidal.sigma, self)
def __init__(self):
super(SigmoidalJansenRitForm, self).__init__()
self.cmin = ArrayField(SigmoidalJansenRit.cmin)
self.cmax = ArrayField(SigmoidalJansenRit.cmax)
self.midpoint = ArrayField(SigmoidalJansenRit.midpoint)
self.r = ArrayField(SigmoidalJansenRit.r)
self.a = ArrayField(SigmoidalJansenRit.a)
def __init__(self):
super(SigmoidalJansenRitForm, self).__init__()
self.cmin = ArrayField(SigmoidalJansenRit.cmin, self.project_id)
self.cmax = ArrayField(SigmoidalJansenRit.cmax, self.project_id)
self.midpoint = ArrayField(SigmoidalJansenRit.midpoint,
self.project_id)
self.r = ArrayField(SigmoidalJansenRit.r, self.project_id)
self.a = ArrayField(SigmoidalJansenRit.a, self.project_id)
def __init__(self):
super(CoombesByrne2DModelForm, self).__init__()
self.Delta = ArrayField(ModelsEnum.COOMBES_BYRNE_2D.get_class().Delta)
self.v_syn = ArrayField(ModelsEnum.COOMBES_BYRNE_2D.get_class().v_syn)
self.k = ArrayField(ModelsEnum.COOMBES_BYRNE_2D.get_class().k)
self.eta = ArrayField(ModelsEnum.COOMBES_BYRNE_2D.get_class().eta)
self.variables_of_interest = MultiSelectField(
ModelsEnum.COOMBES_BYRNE_2D.get_class().variables_of_interest)
def __init__(self, prefix='', project_id=None):
super(ConnectivityCreatorForm, self).__init__(prefix, project_id)
self.original_connectivity = TraitDataTypeSelectField(ConnectivityCreatorModel.original_connectivity, self,
name='original_connectivity', conditions=self.get_filters())
self.new_weights = ArrayField(ConnectivityCreatorModel.new_weights, self)
self.new_tracts = ArrayField(ConnectivityCreatorModel.new_tracts, self)
self.interest_area_indexes = ArrayField(ConnectivityCreatorModel.interest_area_indexes, self)
self.is_branch = BoolField(ConnectivityCreatorModel.is_branch, self)
def test_array_field_required_empty(self):
int_attr = NArray(label='Dummy Int', default=0)
array_field = ArrayField(int_attr, self.name)
post_data = {'dummy_name': ''}
array_field.fill_from_post(post_data)
assert array_field.validate() is False, "Validation should have failed on ArrayField!"
assert array_field.value == ''
def test_array_field_optional(self):
int_attr = NArray(label='Dummy Int', default=0, required=False)
array_field = ArrayField(int_attr, self.name)
array_str = ''
post_data = {'dummy_name': array_str}
array_field.fill_from_post(post_data)
assert array_field.data is None, "Empty data was not set correctly on ArrayField!"
assert array_field.value == ''
def __init__(self):
super(PreSigmoidalCouplingForm, self).__init__()
self.H = ArrayField(PreSigmoidal.H)
self.Q = ArrayField(PreSigmoidal.Q)
self.G = ArrayField(PreSigmoidal.G)
self.P = ArrayField(PreSigmoidal.P)
self.theta = ArrayField(PreSigmoidal.theta)
self.dynamic = BoolField(PreSigmoidal.dynamic)
self.globalT = BoolField(PreSigmoidal.globalT)
def __init__(self, prefix=''):
super(PreSigmoidalCouplingForm, self).__init__(prefix)
self.H = ArrayField(PreSigmoidal.H, self)
self.Q = ArrayField(PreSigmoidal.Q, self)
self.G = ArrayField(PreSigmoidal.G, self)
self.P = ArrayField(PreSigmoidal.P, self)
self.theta = ArrayField(PreSigmoidal.theta, self)
self.dynamic = ScalarField(PreSigmoidal.dynamic, self)
self.globalT = ScalarField(PreSigmoidal.globalT, self)
def __init__(self):
super(PreSigmoidalCouplingForm, self).__init__()
self.H = ArrayField(PreSigmoidal.H, self.project_id)
self.Q = ArrayField(PreSigmoidal.Q, self.project_id)
self.G = ArrayField(PreSigmoidal.G, self.project_id)
self.P = ArrayField(PreSigmoidal.P, self.project_id)
self.theta = ArrayField(PreSigmoidal.theta, self.project_id)
self.dynamic = BoolField(PreSigmoidal.dynamic, self.project_id)
self.globalT = BoolField(PreSigmoidal.globalT, self.project_id)
def __init__(self, are_voi_disabled=False):
super(CoombesByrneModelForm, self).__init__(are_voi_disabled)
self.Delta = ArrayField(ModelsEnum.COOMBES_BYRNE.get_class().Delta)
self.alpha = ArrayField(ModelsEnum.COOMBES_BYRNE.get_class().alpha)
self.v_syn = ArrayField(ModelsEnum.COOMBES_BYRNE.get_class().v_syn)
self.k = ArrayField(ModelsEnum.COOMBES_BYRNE.get_class().k)
self.eta = ArrayField(ModelsEnum.COOMBES_BYRNE.get_class().eta)
self.variables_of_interest = MultiSelectField(
ModelsEnum.COOMBES_BYRNE.get_class().variables_of_interest)
def __init__(self, are_voi_disabled=False):
super(ReducedWongWangModelForm, self).__init__(are_voi_disabled)
self.a = ArrayField(ModelsEnum.REDUCED_WONG_WANG.value.a)
self.b = ArrayField(ModelsEnum.REDUCED_WONG_WANG.value.b)
self.d = ArrayField(ModelsEnum.REDUCED_WONG_WANG.value.d)
self.gamma = ArrayField(ModelsEnum.REDUCED_WONG_WANG.value.gamma)
self.tau_s = ArrayField(ModelsEnum.REDUCED_WONG_WANG.value.tau_s)
self.w = ArrayField(ModelsEnum.REDUCED_WONG_WANG.value.w)
self.J_N = ArrayField(ModelsEnum.REDUCED_WONG_WANG.value.J_N)
self.I_o = ArrayField(ModelsEnum.REDUCED_WONG_WANG.value.I_o)
self.sigma_noise = ArrayField(ModelsEnum.REDUCED_WONG_WANG.value.sigma_noise)
self.variables_of_interest = MultiSelectField(ModelsEnum.REDUCED_WONG_WANG.value.variables_of_interest)
def __init__(self, prefix=''):
super(BarAndBazForm, self).__init__(prefix)
self.bar = FormField(BarForm, self, 'bar', label='bar') # BarAndBaz.bar
self.baz = FormField(BazForm, self, 'baz', label='baaz')
# not from trait
self.happy = ScalarField(Attr(bool, label='clap'), self, 'clasp')
self.array = ArrayField(BarAndBaz.array, self)
def __init__(self):
super(BarAndBazForm, self).__init__()
self.bar = FormField(BarForm, 'bar', label='bar') # BarAndBaz.bar
self.baz = FormField(BazForm, 'baz', label='baaz')
# not from trait
self.happy = BoolField(Attr(bool, label='clap'), 'clasp')
self.array = ArrayField(BarAndBaz.array)
def __init__(self):
super(MultiplicativeNoiseForm, self).__init__()
self.nsig = ArrayField(MultiplicativeNoiseViewModel.nsig)
self.equation = SelectField(
EnumAttr(label='Equation', default=TemporalEquationsEnum.LINEAR),
name='equation',
subform=get_form_for_equation(TemporalEquationsEnum.LINEAR.value))
def __init__(self,
project_id=None,
surface_index=None,
connectivity_gid=None):
super(SimulatorRMFragment, self).__init__(project_id)
rm_conditions = None
lc_conditions = None
if surface_index:
rm_conditions = FilterChain(
fields=[
FilterChain.datatype + '.fk_surface_gid',
FilterChain.datatype + '.fk_connectivity_gid'
],
operations=["==", "=="],
values=[str(surface_index.gid),
str(connectivity_gid.hex)])
lc_conditions = FilterChain(
fields=[rm_conditions.fields[0]],
operations=[rm_conditions.operations[0]],
values=[rm_conditions.values[0]])
self.rm = TraitDataTypeSelectField(CortexViewModel.region_mapping_data,
self.project_id,
name='region_mapping',
conditions=rm_conditions)
self.lc = TraitDataTypeSelectField(CortexViewModel.local_connectivity,
self.project_id,
name='local_connectivity',
conditions=lc_conditions)
self.coupling_strength = ArrayField(CortexViewModel.coupling_strength,
self.project_id)
def __init__(self,
session_stored_simulator=None,
is_period_disabled=False):
super(SpatialAverageMonitorForm,
self).__init__(session_stored_simulator, is_period_disabled)
self.spatial_mask = ArrayField(SpatialAverage.spatial_mask)
self.default_mask = SelectField(SpatialAverage.default_mask)
def __init__(self, are_voi_disabled=False):
super(GastSchmidtKnoscheSFModelForm, self).__init__(are_voi_disabled)
self.tau = ArrayField(ModelsEnum.GAST_SCHMIDT_KNOSCHE_SF.value.tau)
self.tau_A = ArrayField(ModelsEnum.GAST_SCHMIDT_KNOSCHE_SF.value.tau_A)
self.alpha = ArrayField(ModelsEnum.GAST_SCHMIDT_KNOSCHE_SF.value.alpha)
self.I = ArrayField(ModelsEnum.GAST_SCHMIDT_KNOSCHE_SF.value.I)
self.Delta = ArrayField(ModelsEnum.GAST_SCHMIDT_KNOSCHE_SF.value.Delta)
self.J = ArrayField(ModelsEnum.GAST_SCHMIDT_KNOSCHE_SF.value.J)
self.eta = ArrayField(ModelsEnum.GAST_SCHMIDT_KNOSCHE_SF.value.eta)
self.cr = ArrayField(ModelsEnum.GAST_SCHMIDT_KNOSCHE_SF.value.cr)
self.cv = ArrayField(ModelsEnum.GAST_SCHMIDT_KNOSCHE_SF.value.cv)
self.variables_of_interest = MultiSelectField(
ModelsEnum.GAST_SCHMIDT_KNOSCHE_SF.value.variables_of_interest)
def __init__(self, prefix=''):
super(MultiplicativeNoiseForm, self).__init__(prefix)
self.equation_choices = get_ui_name_to_equation_dict()
default_equation = list(self.equation_choices.values())[0]
self.nsig = ArrayField(Multiplicative.nsig, self)
self.equation = SelectField(Attr(Equation, label='Equation', default=default_equation), self, name='equation',
choices=self.equation_choices, subform=get_form_for_equation(default_equation))
def __init__(self,
session_stored_simulator=None,
prefix='',
project_id=None):
super(SpatialAverageMonitorForm,
self).__init__(session_stored_simulator, prefix, project_id)
self.spatial_mask = ArrayField(SpatialAverage.spatial_mask, self)
self.default_mask = ScalarField(SpatialAverage.default_mask, self)
def __init__(self,
variables_of_interest_indexes={},
prefix='',
project_id=None):
super(SpatialAverageMonitorForm,
self).__init__(variables_of_interest_indexes, prefix, project_id)
self.spatial_mask = ArrayField(SpatialAverage.spatial_mask, self)
self.default_mask = ScalarField(SpatialAverage.default_mask, self)
def __init__(self):
super(ReducedWongWangModelForm, self).__init__()
self.a = ArrayField(ModelsEnum.REDUCED_WONG_WANG.get_class().a)
self.b = ArrayField(ModelsEnum.REDUCED_WONG_WANG.get_class().b)
self.d = ArrayField(ModelsEnum.REDUCED_WONG_WANG.get_class().d)
self.gamma = ArrayField(ModelsEnum.REDUCED_WONG_WANG.get_class().gamma)
self.tau_s = ArrayField(ModelsEnum.REDUCED_WONG_WANG.get_class().tau_s)
self.w = ArrayField(ModelsEnum.REDUCED_WONG_WANG.get_class().w)
self.J_N = ArrayField(ModelsEnum.REDUCED_WONG_WANG.get_class().J_N)
self.I_o = ArrayField(ModelsEnum.REDUCED_WONG_WANG.get_class().I_o)
self.sigma_noise = ArrayField(
ModelsEnum.REDUCED_WONG_WANG.get_class().sigma_noise)
self.variables_of_interest = MultiSelectField(
ModelsEnum.REDUCED_WONG_WANG.get_class().variables_of_interest)
def __init__(self, prefix=''):
super(MultiplicativeNoiseForm, self).__init__(prefix)
self.nsig = ArrayField(Multiplicative.nsig, self)
self.equation_choices = get_ui_name_to_equation_dict()
self.equation = SimpleSelectField(self.equation_choices,
self,
name='equation',
required=True,
label='Equation')
def __init__(self, are_voi_disabled=False):
super(MontbrioPazoRoxinModelForm, self).__init__(are_voi_disabled)
self.tau = ArrayField(ModelsEnum.MONTBRIO_PAZO_ROXIN.value.tau)
self.I = ArrayField(ModelsEnum.MONTBRIO_PAZO_ROXIN.value.I)
self.Delta = ArrayField(ModelsEnum.MONTBRIO_PAZO_ROXIN.value.Delta)
self.J = ArrayField(ModelsEnum.MONTBRIO_PAZO_ROXIN.value.J)
self.eta = ArrayField(ModelsEnum.MONTBRIO_PAZO_ROXIN.value.eta)
self.Gamma = ArrayField(ModelsEnum.MONTBRIO_PAZO_ROXIN.value.Gamma)
self.cr = ArrayField(ModelsEnum.MONTBRIO_PAZO_ROXIN.value.cr)
self.cv = ArrayField(ModelsEnum.MONTBRIO_PAZO_ROXIN.value.cv)
self.variables_of_interest = MultiSelectField(ModelsEnum.MONTBRIO_PAZO_ROXIN.value.variables_of_interest)
def __init__(self, are_voi_disabled=False):
super(ReducedSetFitzHughNagumoModelForm, self).__init__(are_voi_disabled)
self.tau = ArrayField(ModelsEnum.REDUCED_SET_FITZ_HUGH_NAGUMO.value.tau)
self.a = ArrayField(ModelsEnum.REDUCED_SET_FITZ_HUGH_NAGUMO.value.a)
self.b = ArrayField(ModelsEnum.REDUCED_SET_FITZ_HUGH_NAGUMO.value.b)
self.K11 = ArrayField(ModelsEnum.REDUCED_SET_FITZ_HUGH_NAGUMO.value.K11)
self.K12 = ArrayField(ModelsEnum.REDUCED_SET_FITZ_HUGH_NAGUMO.value.K12)
self.K21 = ArrayField(ModelsEnum.REDUCED_SET_FITZ_HUGH_NAGUMO.value.K21)
self.sigma = ArrayField(ModelsEnum.REDUCED_SET_FITZ_HUGH_NAGUMO.value.sigma)
self.mu = ArrayField(ModelsEnum.REDUCED_SET_FITZ_HUGH_NAGUMO.value.mu)
self.variables_of_interest = MultiSelectField(
ModelsEnum.REDUCED_SET_FITZ_HUGH_NAGUMO.value.variables_of_interest)
