def download_location(event, context):
user = event['requestContext']['authorizer']['principalId']
if 'pathParameters' in event:
location_id = event["pathParameters"]["location_id"]
value, retcode = location_controller.download_location(
location_id, user,
location_controller.authorizer(event['requestContext']['authorizer']))
value.location_id = str(value.location_id)
return create_response(event, retcode, value)
def delete_location(event, context):
user = event['requestContext']['authorizer']['principalId']
if 'pathParameters' in event:
location_id = event["pathParameters"]["location_id"]
location = Location.from_dict(json.loads(event["body"]))
value, retcode = location_controller.delete_location(
location_id, user,
location_controller.authorizer(event['requestContext']['authorizer']))
return create_response(event, retcode, value)
def merge_original_samples(event, context):
user = event['requestContext']['authorizer']['principalId']
if 'pathParameters' in event:
into = event["pathParameters"]["into"]
merged = event["pathParameters"]["merged"]
value, retcode = original_sample_controller.merge_original_samples(into,
merged,
user,
original_sample_controller.authorizer(event['requestContext']['authorizer']))
return create_response(event, retcode, value)
def delete_event_set(event, context):
"""
deletes an eventSet
:param eventSetId: ID of eventSet to delete
:type eventSetId: str
:rtype: None
"""
user = get_user(event)
if user is None:
return create_response(event, 401, {})
auths = get_auths(event_set_controller, event)
if 'pathParameters' in event:
event_set_id = event["pathParameters"]["event_set_id"]
value, retcode = event_set_controller.delete_event_set(
event_set_id, user, auths)
return create_response(event, retcode, value)
def update_example(event, context):
user = event['requestContext']['authorizer']['principalId']
auth = example_controller.authorizer(event['requestContext']['authorizer'])
if 'pathParameters' in event:
example_id = event["pathParameters"]["example_id"]
input_body = Example.from_dict(get_body(event))
example = input_body
value, retcode = example_controller.update_example(example_id, example, user, auth)
return create_response(event, retcode, value)
def update_individual(event, context):
user = event['requestContext']['authorizer']['principalId']
if 'pathParameters' in event:
individual_id = event["pathParameters"]["individual_id"]
individual = Individual.from_dict(json.loads(event["body"]))
value, retcode = individual_controller.update_location(
individual_id, individual, user,
individual_controller.authorizer(
event['requestContext']['authorizer']))
return create_response(event, retcode, value)
def update_assay_datum(event, context):
user = event['requestContext']['authorizer']['principalId']
if 'pathParameters' in event:
assay_datum_id = event["pathParameters"]["assay_datum_id"]
assay_datum = AssayDatum.from_dict(json.loads(event["body"]))
value, retcode = assay_datum_controller.update_location(
assay_datum_id, assay_datum, user,
assay_datum_controller.authorizer(
event['requestContext']['authorizer']))
return create_response(event, retcode, value)
def download_gps_location(event, context):
user = event['requestContext']['authorizer']['principalId']
if 'pathParameters' in event:
latitude = event["pathParameters"]["latitude"]
longitude = event["pathParameters"]["longitude"]
lat = Decimal(latitude)
lng = Decimal(longitude)
value, retcode = location_controller.download_gps_location(
lat, lng, user,
location_controller.authorizer(event['requestContext']['authorizer']))
value.location_id = str(value.location_id)
return create_response(event, retcode, value)
def download_individuals_by_attr(event, context):
user = event['requestContext']['authorizer']['principalId']
if 'pathParameters' in event:
prop_name = event["pathParameters"]["prop_name"]
prop_value = event["pathParameters"]["prop_value"]
study_name = None
if 'queryStringParameters' in event and event["queryStringParameters"]:
if 'study_name' in event["queryStringParameters"]:
study_name = event["queryStringParameters"]["study_name"]
value, retcode = individual_controller.download_individuals_by_attr(
prop_name, prop_value, study_name, user,
individual_controller.authorizer(
event['requestContext']['authorizer']))
return create_response(event, retcode, value)
def download_original_samples(event, context):
user = event['requestContext']['authorizer']['principalId']
start = None
count = None
search_filter = None
if 'queryStringParameters' in event and event["queryStringParameters"]:
if 'start' in event["queryStringParameters"]:
start = int(event["queryStringParameters"]["start"])
if 'count' in event["queryStringParameters"]:
count = int(event["queryStringParameters"]["count"])
if 'search_filter' in event['queryStringParameters']:
search_filter = event["queryStringParameters"]["search_filter"]
value, retcode = original_sample_controller.download_original_samples(search_filter, start,
count, user,
original_sample_controller.authorizer(event['requestContext']['authorizer']))
return create_response(event, retcode, value)
def download_original_samples_by_taxa(event, context):
user = event['requestContext']['authorizer']['principalId']
start = None
count = None
if 'queryStringParameters' in event and event["queryStringParameters"]:
if 'start' in event["queryStringParameters"]:
start = int(event["queryStringParameters"]["start"])
if 'count' in event["queryStringParameters"]:
count = int(event["queryStringParameters"]["count"])
if 'pathParameters' in event:
taxa_id = event["pathParameters"]["taxa_id"]
value, retcode = original_sample_controller.download_original_samples_by_taxa(taxa_id, start,
count, user,
original_sample_controller.authorizer(event['requestContext']['authorizer']))
return create_response(event, retcode, value)
def download_sampling_events_by_study(event, context):
user = event['requestContext']['authorizer']['principalId']
start = None
count = None
if 'queryStringParameters' in event and event["queryStringParameters"]:
if 'start' in event["queryStringParameters"]:
start = int(event["queryStringParameters"]["start"])
if 'count' in event["queryStringParameters"]:
count = int(event["queryStringParameters"]["count"])
if 'pathParameters' in event:
study_name = event["pathParameters"]["study_name"]
value, retcode = sampling_event_controller.download_sampling_events_by_study(study_name, start,
count, user,
sampling_event_controller.authorizer(event['requestContext']['authorizer']))
return create_response(event, retcode, value)
