def resolve_config(document_config, theme_config, serif_config=None):
# Make sure we have the Serif config loaded
if not serif_config:
f = os.path.join(os.path.dirname(__file__), "base_config.yml")
serif_config = yaml.load(file(f, 'r'))
merged = merge_dictionaries(merge_dictionaries(serif_config, theme_config),
document_config)
if 'locale' in merged and not 'language' in merged:
merged['language'] = merged['locale'].split("_")[0]
if 'author' in merged and not 'authors' in merged:
merged['authors'] = [merged['author']]
return merged
def _load_tools(self):
"""Parse and load the tool configuration files.
Args:
None.
Returns:
None.
Raises:
:class:`ExecutionError`
"""
#A list of BuildConfig content dictionaries.
tmp_tools = []
try:
for config in self._tools_config_files:
tmp_tools.append(ToolConfig(config, self._build_xsd_path, 'Tool').get_content)
except ConfigError as e:
err = "Failure to load Tool config file '{0}': {1}".format(e._config_file, e.msg)
raise ExecutionError(err)
if len(tmp_tools) == 0:
self._tools = {}
elif len(tmp_tools) > 1:
try:
self._tools = merge_dictionaries(tmp_tools, fail_on_duplicates=True)
except KeyError as e:
raise ExecutionError("Duplicate tool names detected in tool "
"configuration files: {}", e)
else:
self._tools = tmp_tools[0]
def _load_resources(self):
"""Parse and load the resource configuration file.
Args:
None.
Returns:
None.
Raises:
:class:`ExecutionError`
"""
#A list of ResourceConfig content dictionaries.
tmp_resources = []
try:
for config in self._resource_config_files:
tmp_resources.append(ResourceConfig(config, self._resource_xsd_path).get_content)
except ConfigError as e:
err = "Failure to load Resource config file '{0}': {1}".format(e._config_file, e.msg)
raise ExecutionError(err)
if len(tmp_resources) > 1:
try:
self._resources = merge_dictionaries(tmp_resources, fail_on_duplicates=True)
except KeyError as e:
raise ExecutionError("Duplicate aliases detected in resource "
"configuration files: {}", e)
else:
self._resources = tmp_resources[0]
def check_columns(self, dat, config_type):
""" Check to see if the required parameters are included in datafile, and if so, check if all
values are valid """
dat_columns = dat.columns.values
required_params = self._params[config_type].keys()
params_dict = util.merge_dictionaries([
self._params[p] for p in self._params
]) # collapse nested parameters dictionary
if config_type == 'ground':
if 'surface_type' in dat.columns.values:
unique_surfaces = [
self._surface_types[s]
for s in np.unique(dat['surface_type'])
]
for surf in unique_surfaces:
required_params += self.get_additional_inputs(
surf, dat_columns)
else:
util.CodeError(
'GROUND input column "surface_type" is missing in config file.',
self.log)
elif config_type == 'veg_scatterers':
required_params += self.get_additional_inputs(
config_type, dat_columns)
column_mask = np.in1d(required_params, dat_columns)
if np.sum(column_mask) == len(required_params):
for param in required_params:
print param, dat[param].dtype
values = dat[param][~np.isnan(dat[param])]
if np.sum((values < params_dict[param][0])
| (values > params_dict[param][1])) > 0:
util.CodeError(
'Invalid value detected in column named "' + param +
'" in ' + config_type + ' config datafile', self.log)
else:
if self.verbose:
print config_type + ': all "' + param + '" values = valid'
else:
util.CodeError(
config_type +
' config file is missing the following required parameters: ' +
str(np.array(required_params)[~column_mask]), self.log)