def tblStudySubjectItemChanged(self, current, previous):
"""Event handler which is triggered when selectedStudySubject change
"""
self.tvStudyEvents.setModel(None)
self.tvDicomStudies.setModel(None)
self.textBrowserProgress.clear()
# Take the first column of selected row from table view
index = self.studySubjectProxyModel.index(current.row(), 1)
if index.data().toPyObject():
self._selectedStudySubject = (first.first(
subject for subject in self._studySubjects
if subject.label().encode(
"utf-8") == index.data().toPyObject().toUtf8()))
# TODO: enable this when you migrate to a new version of OC
# I need to load a SubjectKey
# ssREST = self._svcHttp.getStudyCasebookSubject(
# self._mySite.edc.edcbaseurl,
# self.getStudyOid(),
# self._selectedStudySubject.label()
# )
# if ssREST != None:
# self._selectedStudySubject.oid = ssREST.oid
# self.logger.debug("Loaded subject key: " + self._selectedStudySubject.oid)
# TODO: I dont like it, get rid of it ()
# Propagate PatientID into service
self._svcDicom.PatientID = self._selectedStudySubject.subject.uniqueIdentifier
def tblSeriesItemChanged(self, current, previous):
"""On selected DICOM series changed
"""
self.teReport.clear()
# Take the 4th column (UID) of selected row from table view
index = self.seriesProxyModel.index(current.row(), 3)
if index.data().toPyObject():
self._selectedSerie = first.first(
serie for serie in self._studySeries
if str(serie.suid) == index.data().toPyObject())
if self._selectedSerie.modality == "SR":
self.tabWidget.setTabEnabled(1, True)
self.teReport.setEnabled(True)
self.btnApprove.setEnabled(True)
if self._selectedSerie.isApproved:
self.teReport.clear()
self.teReport.insertPlainText(
self._selectedSerie.approvedReportText)
self.teReport.setStyleSheet(self.greenStyle)
else:
self.teReport.setStyleSheet(self.redStyle)
for doc in self._selectedSerie.dsrDocuments:
self.teReport.insertPlainText(doc.renderText())
else:
self.tabWidget.setTabEnabled(1, False)
self.teReport.setEnabled(False)
self.btnApprove.setEnabled(False)
def tblStudyItemChanged(self, current, previous):
"""Event handler which is triggered when selectedStudy change
When the study is selected I have to clean all the other data elements
Which depends on study. It means: StudySubjects, StudyEventDefinitions, StudyEventCRFs
"""
self.textBrowserProgress.clear()
# Take the first column of selected row from table view
index = self.studyProxyModel.index(current.row(), 0)
# Multicentric
if len(self._selectedStudy.sites) > 0:
self._selectedStudySite = first.first(
studySite for studySite in self._selectedStudy.sites
if studySite.identifier.encode(
"utf-8") == index.data().toPyObject().toUtf8())
# Enabled download button
if (self._selectedStudySite is not None):
self.btnDownload.setDisabled(False)
else:
if (self._selectedStudy is not None):
self.btnDownload.setDisabled(False)
# Get the study metadata
self.reloadStudyMetadata()
# Show the selected upload target
msg = "Selected study for download: "
msg += self._selectedStudy.name() + "/"
if len(self._selectedStudy.sites) > 0:
msg += self._selectedStudySite.name + "/"
self.textBrowserProgress.append(msg)
def tblStudyItemChanged(self, current, previous):
"""Event handler which is triggered when selectedStudy change
When the study is selected I have to clean all the other data elements
Which depends on study. It means: StudySubjects, StudyEventDefinitions, StudyEventCRFs
"""
# Clean the model before loading the new one
self.tvStudySubjects.setModel(None)
self.tvStudyEvents.setModel(None)
self.tvCrfs.setModel(None)
self.tvItems.setModel(None)
self.textBrowserProgress.clear()
# Take the first column of selected row from table view
index = self.studyProxyModel.index(current.row(), 0)
# Multicentric
if len(self._selectedStudy.sites) > 0:
self._selectedStudySite = first.first(
studySite
for studySite in self._selectedStudy.sites
if studySite.identifier.encode("utf-8") == index.data().toPyObject().toUtf8()
)
# Get the study metadata
self.reloadStudyMetadata()
def tblCrfFieldItemChanged(self, current, previous):
"""
"""
self.textBrowserProgress.clear()
# Take the second column (OID) of selected row from table view
column = 1
index = self.itemProxyModel.index(current.row(), column)
if index.data().toPyObject():
self._selectedItem = first.first(
i for i in self._selectedCrf.items if i.oid.encode("utf-8") == index.data().toPyObject().toUtf8()
)
# Show the selected import target
msg = "Selected import target: "
msg += self._selectedStudy.name + "/"
if len(self._selectedStudy.sites) > 0:
msg += self._selectedStudySite.name + "/"
msg += "StudySubjectID: " + self._selectedStudySubject.label + "/"
if self._selectedStudyEvent.isRepeating:
msg += self._selectedStudyEvent.name + " [" + self._selectedStudyEvent.studyEventRepeatKey + "]/"
else:
msg += self._selectedStudyEvent.name + "/"
msg += self._selectedCrf.name + "/"
msg += self._selectedItem.name
self._logger.debug(msg)
self.textBrowserProgress.append(msg)
def tblCrfFieldItemChanged(self, current, previous):
"""
"""
self.textBrowserProgress.clear()
# Take the second column (OID) of selected row from table view
column = 1
index = self.itemProxyModel.index(current.row(), column);
if index.data().toPyObject():
self._selectedItem = (
first.first(
i for i in self._selectedCrf.items if i.oid.encode("utf-8") == index.data().toPyObject().toUtf8()
)
)
# Show the selected import target
msg = "Selected import target: "
msg += self._selectedStudy.name + "/"
if len(self._selectedStudy.sites) > 0:
msg += self._selectedStudySite.name + "/"
msg += "StudySubjectID: " + self._selectedStudySubject.label + "/"
if self._selectedStudyEvent.isRepeating:
msg += self._selectedStudyEvent.name + " [" + self._selectedStudyEvent.studyEventRepeatKey + "]/"
else:
msg += self._selectedStudyEvent.name + "/"
msg += self._selectedCrf.name + "/"
msg += self._selectedItem.name
self._logger.debug(msg)
self.textBrowserProgress.append(msg)
def cmbDataFieldsChanged(self, text):
"""
"""
# Selected data to map to metadata
self.dataMapping.data = first.first(dataHeader
for dataHeader in self.dataHeaders
if dataHeader == text)
# Now extract data values from data file according to selection
self.dataValues = []
# Load data values from data file according to selection
for i in range(1, self.dataService.size()):
dataRow = self.dataService.getRow(i)
dataIndex = self.dataService.headers.index(self.dataMapping.data)
dataValue = dataRow[dataIndex]
self.dataValues.append(dataValue)
# Create view model for preview table view
self.model = QtGui.QStandardItemModel()
self.model.setHorizontalHeaderLabels(
["Raw Data", "Mapping transformed data"])
row = 0
for data in self.dataValues:
itemDataField = QtGui.QStandardItem(data)
itemTransformedData = QtGui.QStandardItem("")
self.model.setItem(row, 0, itemDataField)
self.model.setItem(row, 1, itemTransformedData)
row = row + 1
self.tvDataMappingPreview.setModel(self.model)
self.tvDataMappingPreview.resizeColumnsToContents()
def cmbPatIdColumnChanged(self, text):
"""PatientID column changed
"""
# Set selected study and reload sites
self._selectedPatIdColumn = first.first(
col for col in self._columns
if col.encode("utf-8") == text.toUtf8())
# Enable ok button
if self._selectedPatIdColumn:
self.btnOk.setDisabled(False)
else:
self.btnOk.setDisabled(True)
def cmbStudyChanged(self, text):
"""Executed when the concrete study is selected from studies combobox
"""
# Reset table views
self.tvStudies.setModel(None)
self.textBrowserProgress.clear()
# Set selected study and reload sites
self._selectedStudy = first.first(
study for study in self._studies
if study.name().encode("utf-8") == text.toUtf8())
# Disable download button
self._selectedStudySite = None
self.btnDownload.setDisabled(True)
# Reload study sites
self.reloadStudySites()
def tblEventCrfItemChanged(self, current, previous):
"""
"""
self.tvItems.setModel(None)
self.textBrowserProgress.clear()
# Take the second column (OID) of selected row from table view
column = 1
index = self.crfProxyModel.index(current.row(), column);
if index.data().toPyObject():
self._selectedCrf = (
first.first(
crf for crf in self._selectedStudyEvent.forms if crf.oid.encode("utf-8") == index.data().toPyObject().toUtf8()
)
)
self.reloadItems()
def tblEventCrfItemChanged(self, current, previous):
"""
"""
self.tvItems.setModel(None)
self.textBrowserProgress.clear()
# Take the second column (OID) of selected row from table view
column = 1
index = self.crfProxyModel.index(current.row(), column)
if index.data().toPyObject():
self._selectedCrf = first.first(
crf
for crf in self._selectedStudyEvent.forms
if crf.oid.encode("utf-8") == index.data().toPyObject().toUtf8()
)
self.reloadItems()
def cmbStudyChanged(self, text):
"""Executed when the concrete study is selected from studies combobox
"""
# Reset table views
self.tvStudies.setModel(None)
self.tvStudySubjects.setModel(None)
self.tvStudyEvents.setModel(None)
self.tvCrfs.setModel(None)
self.tvItems.setModel(None)
self.textBrowserProgress.clear()
# Set selected study and reload sites
self._selectedStudy = first.first(
study for study in self._studies if study.name.encode("utf-8") == text.toUtf8()
)
# Reload study sites
if self._selectedStudy:
self._logger.debug("Selected study: %s" % (self._selectedStudy.name))
self.reloadStudySites()
def cmbStudyChanged(self, text):
"""Executed when the concrete study is selected from studies combobox
"""
# Reset table views
self.tvStudies.setModel(None)
self.tvStudySubjects.setModel(None)
self.tvStudyEvents.setModel(None)
self.tvCrfs.setModel(None)
self.tvItems.setModel(None)
self.textBrowserProgress.clear()
# Set selected study and reload sites
self._selectedStudy = first.first(
study for study in self._studies if study.name.encode("utf-8") == text.toUtf8()
)
# Reload study sites
if self._selectedStudy:
self._logger.debug("Selected study: %s" % (self._selectedStudy.name))
self.reloadStudySites()
def loadModuleData(self, selectedIndex):
if selectedIndex == 0:
self.reloadSites()
self.tvStudies.selectionModel().currentChanged.connect(
self.tvStudyChanged)
elif selectedIndex == 1:
self.reloadSubjects()
self.tvSubjects.selectionModel().currentChanged.connect(
self.tvSubjectChanged)
elif selectedIndex == 2:
self.reloadSubjects()
self.tvSubjects.selectionModel().currentChanged.connect(
self.tvSubjectChanged)
self.selectedSubject = first.first(
subject for subject in self.subjects
if subject.subject.uniqueIdentifier ==
self.selectedSubject.subject.uniqueIdentifier)
self.reloadEvents()
self.tvEvents.selectionModel().currentChanged.connect(
self.tvEventsChanged)
def cmbStudyEventChanged(self, text):
"""
"""
# I need to find StudyEvent object according to name (text)
self.__selectedStudyEvent = first.first(event
for event in self.__studyEvents
if event.name() == text)
# When selected event found search CRFs for the event
if self.__selectedStudyEvent is not None:
# Load list of Study Event Form Definition domain objects
self.__studyEventCrfs = self.fileMetaDataService.loadEventCrfs(
self.__selectedStudyEvent)
# And prepare ViewModel for the GUI
sefModel = QtGui.QStandardItemModel()
for studyEventCrf in self.__studyEventCrfs:
text = QtGui.QStandardItem(studyEventCrf.name())
sefModel.appendRow([text])
self.cmbEventForm.setModel(sefModel)
def tblStudySubjectItemChanged(self, current, previous):
"""Event handler which is triggered when selectedStudySubject change
"""
self.tvStudyEvents.setModel(None)
self.tvCrfs.setModel(None)
self.tvItems.setModel(None)
self.textBrowserProgress.clear()
# Take the second column (StudySubjectID) of selected row from table view
column = 1
index = self.studySubjectProxyModel.index(current.row(), column)
print index.data().toPyObject()
if index.data().toPyObject():
self._selectedStudySubject = first.first(
subject
for subject in self._studySubjects
if subject.label.encode("utf-8") == index.data().toPyObject().toUtf8()
)
if self._selectedStudySubject:
# Load scheduled events for selected subject
self.reloadEvents()
def tblStudySubjectItemChanged(self, current, previous):
"""Event handler which is triggered when selectedStudySubject change
"""
self.tvStudyEvents.setModel(None)
self.tvCrfs.setModel(None)
self.tvItems.setModel(None)
self.textBrowserProgress.clear()
# Take the second column (StudySubjectID) of selected row from table view
column = 1
index = self.studySubjectProxyModel.index(current.row(), column);
print index.data().toPyObject()
if index.data().toPyObject():
self._selectedStudySubject = (
first.first(
subject for subject in self._studySubjects if subject.label.encode("utf-8") == index.data().toPyObject().toUtf8()
)
)
if self._selectedStudySubject:
# Load scheduled events for selected subject
self.reloadEvents()
def tblStudyItemChanged(self, current, previous):
"""Event handler which is triggered when selectedStudy change
When the study is selected I have to clean all the other data elements
Which depends on study. It means: StudySubjects, StudyEventDefinitions, StudyEventCRFs
"""
# Clean the model before loading the new one
self.tvStudySubjects.setModel(None)
self.tvStudyEvents.setModel(None)
self.tvCrfs.setModel(None)
self.tvItems.setModel(None)
self.textBrowserProgress.clear()
# Take the first column of selected row from table view
index = self.studyProxyModel.index(current.row(), 0);
# Multicentric
if len(self._selectedStudy.sites) > 0:
self._selectedStudySite = first.first(
studySite for studySite in self._selectedStudy.sites if studySite.identifier.encode("utf-8") == index.data().toPyObject().toUtf8()
)
# Get the study metadata
self.reloadStudyMetadata()
def get_ordered_time(self):
return first(
self.order_events,
lambda oe: oe.event_id == Event.get_ordered_id()).timestamp
def cmbEventFormChanged(self, text):
"""
"""
self.__selectedEventCrf = first.first(crf
for crf in self.__studyEventCrfs
if crf.name() == text)
def cmbStudyEventsChanged(self, text):
"""
"""
self.selectedEvent = first.first(
unsheduledEvent for unsheduledEvent in self.studyEvents
if unsheduledEvent.oid == text)
def __get_beer_pub_product(self, product):
return first(self.beer_pub_products,
lambda bpp: bpp.product_id == product.id)