def validate_net(net, loader, name='Test', epoch=None, is_save=True, limit=None, display=False):
net.eval()
dices_a = []
dices_b = []
losses_a = []
losses_b = []
count = 0
for j, data in enumerate(loader):
if limit != None and count >= limit:
break
#### look here is it training on image 0 or edges 2?????
image_a = data['A'][IMAGE_INDEX].cuda()
target_a = data['A'][1].cuda()
image_b = data['B'][IMAGE_INDEX].cuda()
target_b = data['B'][1].cuda()
# do validation on test set here!
with torch.no_grad():
if torch.max(target_a) != 0:
# res_a = net.downsample(image_a)
# pred = net.upsample(*res_a)
pred = net(image_a)
loss = criterion(pred, target_a).item()
pred = torch.round(pred)
dice_score = compute_dice_metric(pred, target_a).item()
dices_a.append(dice_score)
losses_a.append(loss)
if torch.max(target_b) != 0:
# res_b = net.downsample(image_b)
# pred = net.upsample(*res_b)
pred = net(image_b)
loss = criterion(pred, target_b).item()
pred = torch.round(pred)
dice_score = compute_dice_metric(pred, target_b).item()
dices_b.append(dice_score)
losses_b.append(loss)
count += 1
# print dice scores here!
mean_dice_a = np.mean(dices_a)
mean_dice_b = np.mean(dices_b)
mean_loss_a = np.mean(losses_a)
mean_loss_b = np.mean(losses_b)
print('{} - Avg dice A: {}, Avg dice B: {}, Avg loss A: {}, Avg loss B: {}'.format(name,
mean_dice_a,
mean_dice_b,
mean_loss_a,
mean_loss_b))
# return none for the time being
return mean_dice_a, mean_dice_b, mean_loss_a, mean_loss_b
def step(self, x_s, x_t, y_s):
# GAN loss - update discriminator and generator here
# GAN loss - max log(D(x)) + log(1 - D(G(x)))
# update d only
self.d_optim.zero_grad()
out_x_s = self.forward_gen(x_s)
out_x_t = self.forward_gen(x_t)
x_s_real = self.d(out_x_s)
target_real = self.get_target(x_s_real)
loss_real = self.criterion_gan(x_s_real, target_real)
loss_real.backward()
# get generated feature maps from pool / replay for stability
x_s_fake_map = (self.pool.query(out_x_t)).detach()
x_s_fake = self.d(x_s_fake_map)
target_fake = self.get_target(x_s_fake, is_true=False)
loss_fake = self.criterion_gan(x_s_fake, target_fake)
loss_fake.backward()
self.d_optim.step()
# update g - max D(G(X))
self.g_optim.zero_grad()
x_s_fake = self.d(x_s_fake_map)
target_real = self.get_target(x_s_real)
loss_g = self.criterion_gan(x_s_fake, target_real)
loss_g.backward()
self.g_optim.step()
# Segmentation loss
self.set_requires_grad(self.g, requires_grad=False)
# self.g_optim.zero_grad()
self.seg_optim.zero_grad()
out_seg = self.forward_seg(x_s)
seg_loss = self.criterion_seg(out_seg, y_s)
seg_loss.backward()
# self.g_optim.step()
self.seg_optim.step()
# calculate dice score for current batch
dice_score = compute_dice_metric(torch.round(out_seg), y_s).item()
# backward pass
return seg_loss.item(), (loss_real + loss_fake).item(), dice_score
def train_net(net, loader, data_key, image_idx, target_idx, epoch, is_train=True, opt=None, labeller=None, name='train'):
dice_scores = []
losses = []
count = 0
for i, data in enumerate(tqdm.tqdm(loader)):
image = data[data_key][image_idx].cuda()
if labeller == None:
target = data[data_key][target_idx].cuda()
else:
labeller.eval()
with torch.no_grad():
target = labeller.upsample(*(labeller.downsample(image)))
target = torch.round(target).detach().cuda()
if is_train:
net.train()
opt.zero_grad()
# format for prediction is fixed
pred = net.upsample(*(net.downsample(image)))
loss = criterion(pred, target)
pred = torch.round(pred)
loss.backward()
opt.step()
loss = loss.item()
else:
net.eval()
# do validation on test set here!
with torch.no_grad():
pred = net.upsample(*(net.downsample(image)))
loss = criterion(pred, target).item()
pred = torch.round(pred)
dice_score = compute_dice_metric(pred, target).item()
dice_scores.append(dice_score)
losses.append(loss)
count += 1
# print dice scores here!
mean_dice = np.mean(dice_scores)
mean_loss = np.mean(losses)
print('{} - epoch {} - Avg dice: {}, Avg loss: {}'.format(name, epoch, mean_dice, mean_loss))
# return none for the time being
return mean_dice, mean_loss
# optimiser.zero_grad()
net(image_b)
# pred = net.upsample(*res2)
loss = discrepancy_loss(net.logits, net.logits)
loss.backward()
optimiser_enc.step()
# optimiser.step()
pred_seg_a = net(image_a)
pred_seg_b = net(image_b)
dice_score_a = compute_dice_metric(torch.round(pred_seg_a), target_a)
epoch_train_dice_a.append(dice_score_a.item())
epoch_train_loss_seg.append(loss_seg_a.item())
# mean_loss_rec = np.mean(epoch_train_loss_rec)
mean_loss_seg = np.mean(epoch_train_loss_seg)
mean_dice_a = np.mean(epoch_train_dice_a)
# print('Train A - avg seg:{}'.format(np.mean(epoch_train_loss_seg)))
print('Train A - avg seg: {}, dice A: {}'.format(mean_loss_seg, mean_dice_a))
dice_a, dice_b, loss_a, loss_b = validate_net(net=net, loader=val_loader, name='Validation ', epoch=str(e))
val_loss_a.append(loss_a)
def validate_net(net,
loader,
name='Test',
epoch=None,
is_save=True,
limit=None,
display=False):
net.eval()
dices_a = []
dices_b = []
losses_a = []
losses_b = []
count = 0
for j, data in enumerate(loader):
if limit != None and count >= limit:
break
image_a = data['A'][0].cuda()
target_a = data['A'][1].cuda()
image_b = data['B'][0].cuda()
target_b = data['B'][1].cuda()
image_a_adapt = FDA_source_to_target(image_a, image_b, 0.02).cuda()
# image_b_adapt = FDA_source_to_target(image_b, image_a, 0.02).cuda()
# do validation on test set here!
with torch.no_grad():
if torch.max(target_a) != 0:
a1, a2, a3, a4, a5 = net.downsample(image_a_adapt)
pred = net.upsample(a1, a2, a3, a4, a5)
# pred = net(image_a)
loss = criterion(pred, target_a).item()
pred = torch.round(pred)
dice_score = compute_dice_metric(pred, target_a).item()
dices_a.append(dice_score)
losses_a.append(loss)
if torch.max(target_b) != 0:
a1, a2, a3, a4, a5 = net.downsample(image_b)
pred = net.upsample(a1, a2, a3, a4, a5)
# pred = net(image_b)
loss = criterion(pred, target_b).item()
pred = torch.round(pred)
dice_score = compute_dice_metric(pred, target_b).item()
dices_b.append(dice_score)
losses_b.append(loss)
count += 1
# print dice scores here!
mean_dice_a = np.mean(dices_a)
mean_dice_b = np.mean(dices_b)
mean_loss_a = np.mean(losses_a)
mean_loss_b = np.mean(losses_b)
print(
'{} - Avg dice A: {}, Avg dice B: {}, Avg loss A: {}, Avg loss B: {}'.
format(name, mean_dice_a, mean_dice_b, mean_loss_a, mean_loss_b))
# return none for the time being
return mean_dice_a, mean_dice_b, mean_loss_a, mean_loss_b
