def main():
input_file = p.liftover_input
output_file = p.liftover_output
error_file = output_file + '.error'
command_liftover = '../software/liftOver ' + input_file + ' ../software/hg38ToHg19.over.chain ' + output_file + ' ' + error_file
utils.run_command(command_liftover)
utils.now_time("liftOver script was successfully finished!!")
def main():
input_file = p.bed_3UTR_input
output_file = p.bed_3UTR_output
command_bed_3UTR = '../software/bed12to3UTRbed.sh ' + input_file + ' > ' + output_file
print (command_bed_3UTR)
utils.run_command(command_bed_3UTR)
utils.now_time("bed_3UTR script was successfully finished!!")
def main():
input_file = p.liftover_input
output_file = p.liftover_output
error_file = output_file + '.error'
command_liftover = '../software/liftOver ' + input_file + ' ../software/hg38ToHg19.over.chain ' + output_file + ' ' + error_file
utils.run_command(command_liftover)
utils.now_time("liftOver script was successfully finished!!")
