def objective(trial):
net = model(**args).to(device)
lr = get_lr(trial)
hist = training(net, train_loader, test_loader, n_epochs, lr, batch_size, device, best_param_name=None)
test_acc = np.array(hist['test_acc'])
return 1 - test_acc.max()
X_test = []
y_test = []
for i in range(timestep, len(testing_set_scaled)):
X_test.append(testing_set_scaled[i-timestep: i, input_col])
y_test.append(testing_set_scaled[i, output_col])
# converting to numpy array
X_test, y_test = np.array(X_test), np.array(y_test)
# creating 3D tensor
X_test = np.reshape(X_test, (X_test.shape[0], X_test.shape[1], no_of_feature))
###############################################################################
epochs = 120
model = train.training(X_train, y_train, no_of_feature, epochs)
path_name = "./model/single_attr_pred_open_from_open"
# Saving the model
save_load.save_model(path_name, model)
###############################################################################
# loading the model
path_name = "./model/single_attr_pred_open_from_open"
model = save_load.load_model(path_name)
sc_output = MinMaxScaler(feature_range = (0,1))
sc_output.fit(input_set[:,output_col])
.shuffle(n_train).map(augment) \
.batch(batch_size).repeat(3) # datasetのサイズを3倍に
test_ds = tf.data.Dataset.from_tensor_slices(
(x_test, y_test)).batch(batch_size)
print('x_train: {}'.format(x_train.shape))
print('y_train: {}'.format(y_train.shape))
print('x_test: {}'.format(x_test.shape))
print('y_test: {}'.format(y_test.shape))
in_shape = x_train.shape[1:]
del x_train, y_train, x_test, y_test
# Model
# model = SimpleCNN(in_shape, n_out=3)
# model = VGG16(weights=None, classes=3, input_shape=in_shape)
# model = ResNet50(weights=None, classes=3, input_shape=in_shape)
# model = InceptionV3(weights=None, classes=3, input_shape=in_shape)
# model = InceptionV3(classes=3, input_shape=in_shape)
model = ResNet50(classes=3, input_shape=in_shape)
# Loss
loss = tfk.losses.SparseCategoricalCrossentropy()
# Optimizer
opt = tfk.optimizers.Adam(lr)
# Training
hist = training(model, train_ds, test_ds, loss, opt, n_epochs, batch_size)
pd.DataFrame(hist).to_csv('history.csv')
# ============================================================================
count = 0
epochs = 90
combination = []
# creating pairs of feature attributes
from itertools import combinations
for i in range(1, len(input_col) + 1):
combination.append(list((combinations(input_col, i))))
for i in range(no_of_feature):
for j in range(len(combination[i])):
feature = np.array(combination[i][j])
model = train.training(X_train[:, :, feature], y_train, feature.shape[0]\
, epochs, 'relu', 'adam')
# Saving the model
path_name = "./model/feature_importance" + "/" + str(count)
os.mkdir(path_name)
save_load.save_model(path_name, model)
count = count + 1
# =============================================================================
path_name = "./model/feature_importance"
# actual output
test_actual = sc_output.inverse_transform(y_test)
# creating dataframe for storing result
results = pd.DataFrame(columns=['feature_col', 'r2_score', 'mse_score'])
output_col, no_of_feature)
# creating testing set
testing_set = df_test.iloc[:, columns].values
x1 = pd.DataFrame(training_set[len(training_set) - timestep:])
x2 = pd.DataFrame(testing_set)
testing_set = np.array(pd.concat([x1, x2]))
testing_set_scaled = sc_input.transform(testing_set)
X_test, y_test = tensor.create_tensor(testing_set_scaled, timestep, input_col, \
output_col, no_of_feature)
###############################################################################
epochs = 90
model = train.training(X_train, y_train, no_of_feature, epochs, 'relu', 'adam')
path_name = "./model/final_model"
# Saving the model
save_load.save_model(path_name, model)
###############################################################################
# loading the model
path_name = "./model/final_model"
model = save_load.load_model(path_name)
# prediction using train set
pred_train_scaled = model.predict(X_train)
import os
count = 0
epochs = 150
combination = []
columns_index = [0, 1, 2, 3]
from itertools import combinations
for i in range(1, len(columns_index) + 1):
combination.append(list((combinations(columns_index, i))))
for i in range(no_of_feature):
for j in range(len(combination[i])):
feature = np.array(combination[i][j])
model = train.training(X_train[:, :, feature], y_train,
feature.shape[0], epochs)
path_name = "./model/feature_importance_close" + "/" + str(count)
#os.mkdir(path_name)
# Saving the model
save_load.save_model(path_name, model)
count = count + 1
# =============================================================================
path_name = "./model/feature_importance_close"
sc_output = MinMaxScaler(feature_range=(0, 1))
sc_output.fit(input_set[:, output_col])
test_actual = sc_output.inverse_transform(y_test)
# hyperparameters
neurons = [5, 60, 80]
optimiser = ['adam', 'rmsprop']
activation = ['tanh', 'relu', 'sigmoid']
count = 0
# ============================================================================
for neuron in neurons:
# creating 3d tensor
X_train, y_train = tensor.create_tensor(training_set_scaled, neuron, \
input_col, output_col, no_of_feature)
for optim in optimiser:
for func in activation:
# fitting the model
model = train.training(X_train, y_train, no_of_feature, epochs, \
func, optim)
# Saving the model
path_name = "./model/hyperParaModels" + "/" + str(count)
os.mkdir(path_name)
save_load.save_model(path_name, model)
count = count + 1
# =============================================================================
path_name = "./model/hyperParaModels"
results = pd.DataFrame(
columns=['neuron', 'optim', 'activation', 'r2_score', 'MSE'])
count = 0
def main(minibatch_updates=None, min_num_triples=None, max_num_triples=None):
# Free CUDA memory
if str(device) == 'cuda':
torch.cuda.empty_cache()
if not minibatch_updates:
minibatch_updates = MINIBATCH_UPDATES
print('Updated minibatch_updates:', minibatch_updates)
if not min_num_triples:
min_num_triples = MIN_NUM_TRIPLES
print('Updated min_num_triples:', min_num_triples)
if not max_num_triples:
max_num_triples = MAX_NUM_TRIPLES
print('Updated max_num_triples:', max_num_triples)
eval_data = {
'min_num_triples': min_num_triples,
'max_num_triples': max_num_triples,
'minibatch_updates': minibatch_updates,
# 'train_losses': train_losses,
'val': {
# epoch: {
# 'TP': ...,
# 'FP': ...,
# 'FN': ...,
# 'prec': ...,
# 'rec': ...
# },
},
#'test': {
# 'TP': ...,
# 'FP': ...,
# 'FN': ...,
# 'prec': ...,
# 'rec': ...
#}
}
# Get datasets
train, train_stats = get_train_vocab(min_num_triples=min_num_triples,
max_num_triples=max_num_triples)
test, test_stats = get_test_vocab(min_num_triples=min_num_triples,
max_num_triples=max_num_triples)
train, train_stats, dev, dev_stats = get_dev_vocab(
train,
train_stats,
min_num_triples=min_num_triples,
max_num_triples=max_num_triples)
print_stats(train,
dev,
test,
min_num_triples=min_num_triples,
max_num_triples=max_num_triples)
# Train
eval_data, encoder, decoder, word2idx, idx2word, rdf_vocab,\
tokenizer, max_sen_len = training(train,
dev,
eval_data,
device=device,
minibatch_updates=minibatch_updates,
min_nr_triples=min_num_triples,
max_nr_triples=max_num_triples
)
print('Train losses:', eval_data['train_losses'])
# For test data & for all number of tuples per sentence
# (in [min_num_triples, max_num_triples]), get the nr of train-/test instances
len_x_test = [len(test_set) for test_set in test]
tp, fp, fn, cnt_made_up, conf_matrix = evaluation(
test,
rdf_vocab, # Decoder's word embeddings
word2idx,
idx2word,
device,
encoder,
decoder,
tokenizer,
len_x_test,
max_sen_len,
min_nr_triples=min_num_triples,
max_nr_triples=max_num_triples,
end_token_idx=word2idx['END'],
max_pred_len=30,
debug=True)
print('Final eval:')
print('Conf matrix:', conf_matrix)
print('TP:', tp, 'FP:', fp, 'FN:', fn, 'Made up:', cnt_made_up)
prec = precision(tp, fp)
rec = recall(tp, fn)
f1 = f1_score(prec, rec)
# Save test stats
eval_data['test'] = {
'TP': tp,
'FP': fp,
'FN': fn,
'prec': prec,
'rec': rec,
'f1': f1,
'cnt_made_up': cnt_made_up
}
# Save eval_data object in name with unique name
name = 'eval_data_' + datetime.now().strftime(
"%d-%m-%Y_%H-%M-%S") + '_' + str(random.randint(0, 999999)) + '.txt'
with open(name, 'w') as outfile:
json.dump(eval_data, outfile)