def main():
# limit gpu memory usage
def get_session(gpu_fraction):
gpu_options = tf.GPUOptions(
per_process_gpu_memory_fraction=gpu_fraction)
return tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
K.set_session(get_session(args.gpu_fraction))
save_path = os.path.join(args.save_dir, args.model)
if args.load_model is not None:
load_path = os.path.join(args.save_dir, args.load_model)
#####read data#####
dm = DataManager()
print('Loading data...')
if args.action == 'train':
dm.add_data('train_data', train_path, True)
elif args.action == 'semi':
dm.add_data('train_data', train_path, True)
dm.add_data('semi_data', semi_path, False)
elif args.action == 'test':
dm.add_data('train_data', train_path, True)
dm.add_data('test_data', test_path, True)
else:
raise Exception('Action except for train, semi, and test')
# prepare tokenizer
print('get Tokenizer...')
if args.load_model is not None:
# read exist tokenizer
dm.load_tokenizer(os.path.join(load_path, 'token.pk'))
else:
# create tokenizer on new data
dm.tokenize(args.vocab_size)
if not os.path.isdir(save_path):
os.makedirs(save_path)
if not os.path.exists(os.path.join(save_path, 'token.pk')):
dm.save_tokenizer(os.path.join(save_path, 'token.pk'))
# convert to sequences
dm.to_sequence(args.max_length)
# initial model
print('initial model...')
model = simpleRNN(args)
model.summary()
print("args.load_model =", args.load_model)
if args.load_model is not None:
if args.action == 'train':
print('Warning : load a exist model and keep training')
path = os.path.join(load_path, 'model.h5')
if os.path.exists(path):
print('load model from %s' % path)
model.load_weights(path)
else:
raise ValueError("Can't find the file %s" % path)
elif args.action == 'test':
#print ('Warning : testing without loading any model')
print('args.action is %s' % (args.action))
path = os.path.join(load_path, 'model.h5')
if os.path.exists(path):
print('load model from %s' % path)
model.load_weights(path)
else:
raise ValueError("Can't find the file %s" % path)
# training
if args.action == 'train':
(X, Y), (X_val, Y_val) = dm.split_data('train_data', args.val_ratio)
#earlystopping = EarlyStopping(monitor='val_loss', patience = 3, verbose=1, mode='max')
save_path = os.path.join(save_path, 'model.h5')
"""
checkpoint = ModelCheckpoint(filepath=save_path,
verbose=1,
save_best_only=True,
save_weights_only=True,
monitor='val_loss',
mode='max' )
"""
tweets = X[0, :]
snippets = X[1, :]
targets = X[2, :]
print("tweets's shape = ", tweets.shape)
print("snippets's shape = ", snippets.shape)
print("targets's shape = ", targets.shape)
print("Y's shape = ", Y.shape)
#model = Model(inputs=[main_input, auxiliary_input], outputs=[main_output, auxiliary_output])
history = model.fit(
[tweets, snippets, targets],
Y,
validation_data=([X_val[0, :], X_val[1, :], X_val[2, :]], Y_val),
epochs=args.nb_epoch,
batch_size=args.batch_size) #,
#callbacks=[checkpoint, earlystopping] )
predictions = model.predict([tweets, snippets, targets])
#print(predictions.shape)
#print(predictions)
model.save(save_path)
# testing
elif args.action == 'test':
args.val_ratio = 0
(X, Y), (X_val, Y_val) = dm.split_data('test_data', args.val_ratio)
tweets = X[0, :]
snippets = X[1, :]
targets = X[2, :]
#print("tweets.shape =", tweets.shape)
#print("snippets.shape =", snippets.shape)
#print("targets.shape =", targets.shape)
predictions = model.predict([tweets, snippets, targets])
preidctions = predictions.reshape(-1)
#print(predictions)
#print(Y.shape)
#scores = np.sum((predictions - Y)**2)/len(Y)
scores = model.evaluate([tweets, snippets, targets], Y)
print("test data mse by keras = %f" % scores[1])
print("test data mse by sklearn = %f" %
mean_squared_error(Y, predictions))
for idx, value in enumerate(predictions):
if value > 0:
predictions[idx] = 1
elif value == 0:
predictions[idx] = 0
elif value < 0:
predictions[idx] = -1
for idx, value in enumerate(Y):
if value > 0:
Y[idx] = 1
elif value == 0:
Y[idx] = 0
elif value < 0:
Y[idx] = -1
print("test data micro f1 score by sklearn = %f" %
f1_score(Y, predictions, average='micro'))
print("test data macro f1 score by sklearn = %f" %
f1_score(Y, predictions, average='macro'))
#print("test data scores[1](loss = mse) = %f" % scores[1])
#raise Exception ('Implement your testing function')
(X, Y), (X_val, Y_val) = dm.split_data('train_data', args.val_ratio)
tweets = X[0, :]
snippets = X[1, :]
targets = X[2, :]
predictions = model.predict([tweets, snippets, targets])
preidctions = predictions.reshape(-1)
#scores = np.sum((predictions - Y)**2)/len(Y)
scores = model.evaluate([tweets, snippets, targets], Y)
print("train data mse by keras = %f" % scores[1])
print("train data mse by sklearn = %f" %
mean_squared_error(Y, predictions))
for idx, value in enumerate(predictions):
if value > 0:
predictions[idx] = 1
elif value == 0:
predictions[idx] = 0
elif value < 0:
predictions[idx] = -1
for idx, value in enumerate(Y):
if value > 0:
Y[idx] = 1
elif value == 0:
Y[idx] = 0
elif value < 0:
Y[idx] = -1
print("train data micro f1 score by sklearn = %f" %
f1_score(Y, predictions, average='micro'))
print("train data macro f1 score by sklearn = %f" %
f1_score(Y, predictions, average='macro'))
# semi-supervised training
elif args.action == 'semi':
(X, Y), (X_val, Y_val) = dm.split_data('train_data', args.val_ratio)
[semi_all_X] = dm.get_data('semi_data')
earlystopping = EarlyStopping(monitor='val_loss',
patience=3,
verbose=1,
mode='max')
save_path = os.path.join(save_path, 'model.h5')
checkpoint = ModelCheckpoint(filepath=save_path,
verbose=1,
save_best_only=True,
save_weights_only=True,
monitor='val_loss',
mode='max')
# repeat 10 times
for i in range(10):
# label the semi-data
semi_pred = model.predict(semi_all_X,
batch_size=1024,
verbose=True)
semi_X, semi_Y = dm.get_semi_data('semi_data', semi_pred,
args.threshold,
args.loss_function)
semi_X = np.concatenate((semi_X, X))
semi_Y = np.concatenate((semi_Y, Y))
print('-- iteration %d semi_data size: %d' % (i + 1, len(semi_X)))
# train
history = model.fit(semi_X,
semi_Y,
validation_data=(X_val, Y_val),
epochs=2,
batch_size=args.batch_size,
callbacks=[checkpoint, earlystopping])
if os.path.exists(save_path):
print('load model from %s' % save_path)
model.load_weights(save_path)
else:
raise ValueError("Can't find the file %s" % path)
def main():
# limit gpu memory usage
def get_session(gpu_fraction):
gpu_options = tf.GPUOptions(
per_process_gpu_memory_fraction=gpu_fraction)
return tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
K.set_session(get_session(args.gpu_fraction))
save_path = os.path.join(args.save_dir, args.model)
if args.load_model is not None:
load_path = os.path.join(args.save_dir, args.load_model)
#处理数据
#####read data#####
dm = DataManager()
print('Loading data...')
if args.action == 'train':
dm.add_data('train_data', train_path, True)
elif args.action == 'semi':
dm.add_data('train_data', train_path, True)
dm.add_data('semi_data', semi_path, False)
else:
dm.add_data('test_data', test_path, False)
# prepare tokenizer
print('get Tokenizer...')
if args.load_model is not None:
# read exist tokenizer
dm.load_tokenizer(os.path.join(load_path, 'token.pk'))
else:
# create tokenizer on new data
dm.tokenize(args.vocab_size)
if not os.path.isdir(save_path):
os.makedirs(save_path)
if not os.path.exists(os.path.join(save_path, 'token.pk')):
dm.save_tokenizer(os.path.join(save_path, 'token.pk'))
# convert to sequences
dm.to_sequence(args.max_length)
#初始化模型
# initial model
print('initial model...')
model = simpleRNN(args)
print(model.summary())
if args.load_model is not None:
if args.action == 'train':
print('Warning : load a exist model and keep training')
path = os.path.join(load_path, 'model.h5')
if os.path.exists(path):
print('load model from %s' % path)
model.load_weights(path)
else:
raise ValueError("Can't find the file %s" % path)
elif args.action == 'test':
print('Warning : testing without loading any model')
#训练过程
# training
if args.action == 'train':
(X, Y), (X_val, Y_val) = dm.split_data('train_data', args.val_ratio)
earlystopping = EarlyStopping(monitor='val_acc',
patience=3,
verbose=1,
mode='max')
save_path = os.path.join(save_path, 'model.h5')
checkpoint = ModelCheckpoint(filepath=save_path,
verbose=1,
save_best_only=True,
save_weights_only=True,
monitor='val_acc',
mode='max')
#创建一个实例history
history = LossHistory()
hist = model.fit(X,
Y,
validation_data=(X_val, Y_val),
epochs=args.nb_epoch,
batch_size=args.batch_size,
callbacks=[checkpoint, earlystopping, history])
#绘制acc-loss曲线
history.loss_plot('epoch')
#测试过程
# testing
elif args.action == 'test':
id = dm.data['test_data'][1]
out = model.predict(dm.data['test_data'][0])
out = np.squeeze(out)
out[out <= 0.5] = 0
out[out > 0.5] = 1
out = out.astype(int)
print("pred shape:", np.array(out).shape)
print("id shape:", np.array(id).shape)
result = pd.concat(
[pd.DataFrame({'id': id}),
pd.DataFrame({'sentiment': out})],
axis=1)
wd = pd.DataFrame(result)
wd.to_csv("submission.csv", index=None)
newZip = zipfile.ZipFile('submission.zip', 'w')
newZip.write('submission.csv', compress_type=zipfile.ZIP_DEFLATED)
newZip.close()
#半监督训练过
# semi-supervised training
elif args.action == 'semi':
(X, Y), (X_val, Y_val) = dm.split_data('train_data', args.val_ratio)
[semi_all_X] = dm.get_data('semi_data')
earlystopping = EarlyStopping(monitor='val_acc',
patience=3,
verbose=1,
mode='max')
save_path = os.path.join(save_path, 'model.h5')
checkpoint = ModelCheckpoint(filepath=save_path,
verbose=1,
save_best_only=True,
save_weights_only=True,
monitor='val_acc',
mode='max')
# repeat 10 times
for i in range(10):
# label the semi-data
semi_pred = model.predict(semi_all_X,
batch_size=1024,
verbose=True)
semi_X, semi_Y = dm.get_semi_data('semi_data', semi_pred,
args.threshold,
args.loss_function)
semi_X = np.concatenate((semi_X, X))
semi_Y = np.concatenate((semi_Y, Y))
print('-- iteration %d semi_data size: %d' % (i + 1, len(semi_X)))
history = LossHistory()
# train
hist = model.fit(semi_X,
semi_Y,
validation_data=(X_val, Y_val),
epochs=2,
batch_size=args.batch_size,
callbacks=[checkpoint, earlystopping, history])
history.loss_plot('epoch')
if os.path.exists(save_path):
print('load model from %s' % save_path)
model.load_weights(save_path)
else:
raise ValueError("Can't find the file %s" % path)
def main():
parser = argparse.ArgumentParser(description='Text OHCA recognition')
parser.add_argument('model')
parser.add_argument('action', choices=['train', 'test'])
# training argument
parser.add_argument('--batch_size', default=256, type=float)
parser.add_argument('--nb_epoch', default=2000, type=int)
parser.add_argument('--val_ratio', default=0.1, type=float)
parser.add_argument('--gpu_fraction', default=0.6, type=float)
parser.add_argument('--vocab_size', default=50000, type=int)
parser.add_argument('--max_length', default=400, type=int)
parser.add_argument('--patience', default=30, type=int)
# model parameter
parser.add_argument('--loss_function', default='binary_crossentropy')
parser.add_argument('--cell', default='LSTM', choices=['LSTM', 'GRU'])
parser.add_argument('-num_lay', '--num_layers', default=2, type=int)
parser.add_argument('-emb_dim', '--embedding_dim', default=256, type=int)
parser.add_argument('-hid_siz', '--hidden_size', default=400, type=int)
parser.add_argument('--pretrain_emb', default=True, type=bool)
parser.add_argument('--emb_matrix', default='cbowemb.npz')
# parser.add_argument('--dropout_rate', default=0.3, type=float)
parser.add_argument('--keep_prob', default=1.0, type=float)
parser.add_argument('-lr', '--learning_rate', default=0.013, type=float)
parser.add_argument('--threshold', default=0.5, type=float)
# output path for your prediction
parser.add_argument(
'--result_path',
default='result.csv',
)
# put model in the same directory
parser.add_argument('--load_model', default=None)
parser.add_argument('--load_token', default=True, type=bool)
parser.add_argument('--save_dir', default='model/')
# log dir for tensorboard
parser.add_argument('--log_dir', default='log_dir/')
# testing output
parser.add_argument('--testfile', default='data/ohca_scripts.txt')
parser.add_argument('--testout', default='data/script_test.txt')
args = parser.parse_args()
train_path = 'data/ohca_scripts.txt'
test_path = args.testfile
save_path = 'token/'
#load token path
if args.load_token is not None:
load_path = os.path.join(save_path)
# limit gpu memory usage
def get_session(gpu_fraction):
gpu_options = tf.GPUOptions(
per_process_gpu_memory_fraction=gpu_fraction)
return tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
sess = get_session(args.gpu_fraction)
#####read data#####
dm = DataManager()
print('Loading data...')
if args.action == 'train':
dm.add_data('train_data', train_path, with_label=True)
else:
dm.add_data('test_data', test_path,
with_label=True) # now the test will have label
# prepare tokenizer
print('get Tokenizer...')
if args.load_token is not None:
# read exist tokenizer
dm.load_tokenizer(os.path.join(load_path, 'token.pk'))
else:
# create tokenizer on new data
dm.tokenize(args.vocab_size)
if not os.path.isdir(save_path):
os.makedirs(save_path)
if not os.path.exists(os.path.join(save_path, 'token.pk')):
dm.save_tokenizer(os.path.join(save_path, 'token.pk'))
# convert to sequences
dm.to_sequence(args.max_length)
# Create the graph object
tf.reset_default_graph()
# initial model
print('initial model...')
rnnmodel = simpleRNN(args)
#print (model.summary())
with tf.name_scope('inputs'):
#create placeholder for training (testing) data
X_ = tf.placeholder(tf.int32, [None, args.max_length], name='X')
y_ = tf.placeholder(tf.int32, [
args.batch_size,
], name='y_')
keep_prob = tf.placeholder_with_default(1.0,
shape=(),
name="keep_prob")
y_predict = rnnmodel.model(args, X_, keep_prob)
#prepare for saving model to evaluate
train_var = [X_, y_, keep_prob, y_predict]
tf.add_to_collection('train_var', train_var[0])
tf.add_to_collection('train_var', train_var[1])
tf.add_to_collection('train_var', train_var[2])
tf.add_to_collection('train_var', train_var[3])
#loss (MSE)
mse = rnnmodel.loss(y_, y_predict)
#optimizers
train_op = rnnmodel.optimizer(args, mse)
#accuracy for validation
accuracy = rnnmodel.accuracy(y_, y_predict)
#initial state of LSTM
init_state = rnnmodel.initial_state
# merge the write out histogram plots (tensorboard)
merged = tf.summary.merge_all()
#check outputs of LSTM
routputs = rnnmodel.outputs
if args.load_model is not None:
load_path = os.path.join(args.save_dir)
if args.action == 'train':
print('Warning : load a exist model variables and keep training')
path = os.path.join(load_path, 'Sentimen_rnn_final')
if os.path.exists(path + ".meta"):
print('load model from %s' % path)
#model.load_weights(path) change to tensorflow model
else:
raise ValueError("Can't find the file %s" % path)
elif args.action == 'test':
print('Warning : testing without loading any model')
raise Exception('Not loading model for testing...')
# training
if args.action == 'train':
(X, Y), (X_val, Y_val) = dm.split_data('train_data', args.val_ratio)
print("Shape of X is {}, and y is {}".format(
np.array(X).shape,
np.array(Y).shape))
elif args.action == 'test':
(X, Y) = dm.get_labeldata('test_data')
print("Load test data (shape {})".format(X.shape))
#raise Exception ('Implement your testing function')
init = tf.global_variables_initializer()
#prepare to save model
save_vars = tf.trainable_variables()
saver = tf.train.Saver(save_vars,
max_to_keep=7,
keep_checkpoint_every_n_hours=1)
last_loss = 1000000.0
with tf.Session() as sess:
init.run()
#if pre-trained, load embedding matrix
if (args.pretrain_emb == True):
emb_npfn = save_path + args.emb_matrix
emb_matrix = np.load(emb_npfn)['embed_m']
if (emb_matrix.shape[0] != args.vocab_size
or emb_matrix.shape[1] != args.embedding_dim):
print(
"Import embedding matrix shape {} does not match shape of ({},{})..."
.format(emb_matrix.shape, args.vocab_size,
args.embedding_dim))
exit(1)
else:
print("Loading embedding matrix.....")
sess.run(rnnmodel.embedding_mat.assign(emb_matrix))
train_writer = tf.summary.FileWriter(args.log_dir + 'train',
sess.graph)
valid_writer = tf.summary.FileWriter(args.log_dir + 'valid',
sess.graph)
# load variables in graphs if assigned
if args.load_model is not None:
saver.restore(sess, path)
#if semi-learning, first apply model to semi-learning data
if (args.action == 'train'):
#training
early_stop_counter = 0
generation_num = 0
# repeat nb_epoch times
for e in range(args.nb_epoch):
state = sess.run([init_state])
semi_preds = []
if (e == 0):
# hard copy
X_train = X.copy()
Y_train = Y.copy()
#elif ( args.action='train'):
#reset initial LSTM state every epochs
n_batches = len(X) // args.batch_size
for ix, (X_batch, y_batch) in enumerate(
get_batches(X_train, Y_train, args.batch_size), 1):
generation_num += 1
train_dict = {
X_: X_batch,
y_: y_batch,
keep_prob: args.keep_prob,
init_state: state
}
#for each traing generation, reload zero initial states
_, summary, mse_train, accu_train = sess.run(
[train_op, merged, mse, accuracy],
feed_dict=train_dict)
train_writer.add_summary(summary, generation_num)
outputs_ = routputs.eval(feed_dict=train_dict)
if (ix == 1):
print(X_batch.shape)
#print("shape of outputs is {}".format(outputs_[:,-1].shape))
if (generation_num % 10 == 0):
print("Epoch: {}/{}".format(e, args.nb_epoch),
"Iteration: {}".format(generation_num),
"Train loss: {:.3f}".format(mse_train))
#validation for each 50 generations or end of each epoch
if (generation_num % 50 == 0 or ix == n_batches):
val_acc = []
val_loss = []
val_state = sess.run([init_state])
for iv, (X_batch, y_batch) in enumerate(
get_batches(X_val, Y_val, args.batch_size), 1):
val_dict = {
X_: X_batch,
y_: y_batch,
keep_prob: 1,
init_state: val_state
}
summary, batch_acc, batch_loss = sess.run(
[merged, accuracy, mse], feed_dict=val_dict)
#print out some answer for checking
val_predict = sess.run(y_predict,
feed_dict=val_dict)
#print("shape of val_predict is {}".format(np.array(val_predict).shape))
#last ten elements of each batch
for y_true, y_pre in zip(y_batch[-9:],
val_predict[-9:]):
print("y_true: {}, y_predict: {}".format(
y_true, y_pre))
val_loss.append(batch_loss)
val_acc.append(batch_acc)
sys.stdout.flush()
print("Iteration: {}".format(generation_num),
"Val acc: {:.3f}".format(np.mean(val_acc)),
"Val mse: {:.3f}".format(np.mean(val_loss)))
valid_writer.add_summary(summary, generation_num)
loss_val_avg = np.mean(val_loss)
#save variables every 50 generations
saver.save(sess,
os.path.join(args.save_dir, "Sentimen_rnn"),
global_step=generation_num)
if (ix == n_batches):
#early stop count here
if (last_loss > loss_val_avg):
last_loss = loss_val_avg
early_stop_counter = 0
else:
early_stop_counter += 1
if (early_stop_counter >= args.patience
or e == (args.nb_epoch - 1)):
#save model
saver.save(
sess, os.path.join(args.save_dir,
"Sentimen_rnn_final"))
saver.export_meta_graph(os.path.join(
args.save_dir, "Sentimen_rnn_final.meta"),
collection_list=['train_var'])
break
print("End of training.....")
#testing
elif (args.action == 'test'):
# hard copy
X_test = X.copy()
Y_test = Y.copy()
state = sess.run([init_state])
with open(args.testout, 'w+') as outfile:
for ix, (X_batch, y_batch) in enumerate(
get_batches(X_test, Y_test, args.batch_size), 1):
test_dict = {
X_: X_batch,
y_: y_batch,
keep_prob: args.keep_prob,
init_state: state
}
#for each traing generation, reload zero initial states
_, y_prebatch, accu_train = sess.run(
[train_op, y_predict, accuracy], feed_dict=test_dict)
for y_true, y_pre in zip(y_batch, y_prebatch):
strout = "%d\t%f\n" % (y_true, y_pre)
outfile.write(strout)
print("Testing finish, write out file {}".format(args.testout))
#raise Exception ('Implement your testing function')
return
def main():
# limit gpu memory usage
def get_session(gpu_fraction):
gpu_options = tf.GPUOptions(
per_process_gpu_memory_fraction=gpu_fraction)
return tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
K.set_session(get_session(args.gpu_fraction))
save_path = os.path.join(args.save_dir, args.model)
if args.load_model is not None:
load_path = os.path.join(args.save_dir, args.load_model)
#####read data#####
dm = DataManager()
print('Loading data...')
if args.action == 'train':
dm.add_data('train_data', train_path, True)
elif args.action == 'semi':
dm.add_data('train_data', train_path, True)
dm.add_data('semi_data', semi_path, False)
elif args.action == 'test':
dm.add_data('test_data', test_path, True)
else:
raise Exception('Action except for train, semi, and test')
# prepare tokenizer
print('get Tokenizer...')
if args.load_model is not None:
# read exist tokenizer
dm.load_tokenizer(os.path.join(load_path, 'token.pk'))
else:
# create tokenizer on new data
dm.tokenize(args.vocab_size)
if not os.path.isdir(save_path):
os.makedirs(save_path)
if not os.path.exists(os.path.join(save_path, 'token.pk')):
dm.save_tokenizer(os.path.join(save_path, 'token.pk'))
# convert to sequences
dm.to_sequence(args.max_length)
# prepare glove embedding
embedding_matrix = preEB(dm)
# initial model
print('initial model...')
model = simpleRNN(args, embedding_matrix, dm.tokenizer.word_index)
model.summary()
print("args.load_model =", args.load_model)
if args.load_model is not None:
if args.action == 'train':
print('Warning : load a exist model and keep training')
path = os.path.join(load_path, 'model.h5')
if os.path.exists(path):
print('load model from %s' % path)
model.load_weights(path)
else:
raise ValueError("Can't find the file %s" % path)
elif args.action == 'test':
#print ('Warning : testing without loading any model')
print('args.action is %s' % (args.action))
path = os.path.join(load_path, 'model.h5')
if os.path.exists(path):
print('load model from %s' % path)
model.load_weights(path)
else:
raise ValueError("Can't find the file %s" % path)
# training
if args.action == 'train':
(X, Y), (X_val, Y_val) = dm.split_data('train_data', args.val_ratio)
#earlystopping = EarlyStopping(monitor='val_loss', patience = 3, verbose=1, mode='max')
save_path = os.path.join(save_path, 'model.h5')
"""
checkpoint = ModelCheckpoint(filepath=save_path,
verbose=1,
save_best_only=True,
save_weights_only=True,
monitor='val_loss',
mode='max' )
"""
history = model.fit(X,
Y,
validation_data=(X_val, Y_val),
epochs=args.nb_epoch,
batch_size=args.batch_size) #,
#callbacks=[checkpoint, earlystopping] )
model.save(save_path)
# testing
elif args.action == 'test':
args.val_ratio = 0
(X, Y), (X_val, Y_val) = dm.split_data('test_data', args.val_ratio)
pred = model.predict(X)
scores = model.evaluate(X, Y)
print("test data scores(loss = mse) = %f" % scores[1])
print("mse: ", evaluation(pred, Y, 'mse'))
print("micro: ", evaluation(pred, Y, 'f1_micro'))
print("macro: ", evaluation(pred, Y, 'f1_macro'))
# semi-supervised training
elif args.action == 'semi':
(X, Y), (X_val, Y_val) = dm.split_data('train_data', args.val_ratio)
[semi_all_X] = dm.get_data('semi_data')
earlystopping = EarlyStopping(monitor='val_loss',
patience=3,
verbose=1,
mode='max')
save_path = os.path.join(save_path, 'model.h5')
checkpoint = ModelCheckpoint(filepath=save_path,
verbose=1,
save_best_only=True,
save_weights_only=True,
monitor='val_loss',
mode='max')
# repeat 10 times
for i in range(10):
# label the semi-data
semi_pred = model.predict(semi_all_X,
batch_size=1024,
verbose=True)
semi_X, semi_Y = dm.get_semi_data('semi_data', semi_pred,
args.threshold,
args.loss_function)
semi_X = np.concatenate((semi_X, X))
semi_Y = np.concatenate((semi_Y, Y))
print('-- iteration %d semi_data size: %d' % (i + 1, len(semi_X)))
# train
history = model.fit(semi_X,
semi_Y,
validation_data=(X_val, Y_val),
epochs=2,
batch_size=args.batch_size,
callbacks=[checkpoint, earlystopping])
if os.path.exists(save_path):
print('load model from %s' % save_path)
model.load_weights(save_path)
else:
raise ValueError("Can't find the file %s" % path)
def main():
parser = argparse.ArgumentParser(description='Text OHCA recognition')
parser.add_argument('--batch_size', default=1,
type=float) # change to 1 for single setence
parser.add_argument('--vocab_size', default=50000, type=int)
# model parameter
parser.add_argument('--loss_function', default='binary_crossentropy')
parser.add_argument('--cell', default='LSTM', choices=['LSTM', 'GRU'])
parser.add_argument('-num_lay', '--num_layers', default=2, type=int)
parser.add_argument('-emb_dim', '--embedding_dim', default=256, type=int)
parser.add_argument('-hid_siz', '--hidden_size', default=400, type=int)
parser.add_argument('--pretrain_emb', default=True, type=bool)
parser.add_argument('--emb_matrix', default='cbowemb.npz')
parser.add_argument('--keep_prob', default=1.0, type=float)
parser.add_argument('--max_length', default=400, type=int)
parser.add_argument('--threshold', default=0.6, type=float)
# output path for your prediction
parser.add_argument(
'--result_path',
default='evalresult.txt',
)
# input testing file name
parser.add_argument('--test_file', default="data/ohca_test1.txt")
# output testing result
parser.add_argument('--outfile', default="data/ohca_testout.txt")
# put model in the same directory
parser.add_argument('--load_model', default=True)
parser.add_argument('--load_token', default=True, type=bool)
parser.add_argument('--save_dir', default='model/')
# log dir for tensorboard
parser.add_argument('--log_dir', default='log_dir/')
args = parser.parse_args()
test_path = args.test_file
save_path = 'token/'
#load token path
if args.load_token is not None:
load_path = os.path.join(save_path)
sess = tf.Session()
#####read data#####
dm = DataManager()
print('Loading test data...')
dm.add_data('test_data', test_path, with_label=False)
# prepare tokenizer
print('get Tokenizer...')
if args.load_token is not None:
# read exist tokenizer
dm.load_tokenizer(os.path.join(load_path, 'token.pk'))
else:
raise Exception("Word token is not loaded...")
# convert to sequences
dm.to_sequence(args.max_length)
# Create the graph object
tf.reset_default_graph()
# initial model
print('initial model...')
rnnmodel = simpleRNN(args)
with tf.name_scope('inputs'):
#create placeholder for training (testing) data
X_ = tf.placeholder(tf.int32, [None, args.max_length], name='X')
#y_ = tf.placeholder(tf.int32, [args.batch_size, ], name='y_')
keep_prob = tf.placeholder_with_default(1.0,
shape=(),
name="keep_prob")
y_predict = rnnmodel.model(args, X_, keep_prob)
#initial state of LSTM
init_state = rnnmodel.initial_state
#check outputs of LSTM
routputs = rnnmodel.outputs
if args.load_model is not None:
load_path = os.path.join(args.save_dir)
path = os.path.join(load_path, 'Sentimen_rnn_final')
if os.path.exists(path + ".meta"):
print('load model from %s' % path)
#model.load_weights(path) change to tensorflow model
else:
raise ValueError("Can't find the file %s" % path)
#elif args.action == 'test' :
X = dm.get_data('test_data')
print("Load test data (shape {})".format(X.shape))
#raise Exception ('Implement your testing function')
init = tf.global_variables_initializer()
saver = tf.train.Saver()
with tf.Session() as sess:
#if pre-trained, load embedding matrix
"""
if (args.pretrain_emb==True):
emb_npfn = save_path+args.emb_matrix
emb_matrix = np.load(emb_npfn)['embed_m']
if (emb_matrix.shape[0]!= args.vocab_size or emb_matrix.shape[1]!=args.embedding_dim):
print("Import embedding matrix shape {} does not match shape of ({},{})...".format(emb_matrix.shape, args.vocab_size, args.embedding_dim))
exit(1)
else:
print("Loading embedding matrix.....")
sess.run(rnnmodel.embedding_mat.assign(emb_matrix))
"""
saver.restore(sess, path)
test_state = sess.run([init_state])
#for Xs in X:
test_dict = {X_: X, keep_prob: 1, init_state: test_state}
test_predict = sess.run(y_predict, feed_dict=test_dict)
if (test_predict > args.threshold):
print("Predicted result is OHCA.")
else:
print("Predicted result is not OHCA.")
with open(args.outfile, 'w+') as outfile:
outstr = "%f" % (test_predict[0])
print(outstr)
outfile.write(outstr)
return