def __init__(self, entry=None, title=None, dataverse=None, edit_uri=None,
edit_media_uri=None, statement_uri=None, **kwargs):
# Generate sword entry
sword_entry = sword2.Entry(entry)
if not get_elements(sword_entry.pretty_print(), namespace='dcterms', tag='title'):
# Append title to entry
if isinstance(title, basestring):
sword_entry.add_field(format_term('title'), title)
else:
raise DataverseException('Study needs a single, valid title.')
if kwargs:
# Updates sword entry from keyword arguments
for k in kwargs.keys():
if isinstance(kwargs[k], list):
for item in kwargs[k]:
sword_entry.add_field(format_term(k), item)
else:
sword_entry.add_field(format_term(k), kwargs[k])
self.entry = sword_entry.pretty_print()
self.dataverse = dataverse
self.edit_uri = edit_uri
self.edit_media_uri = edit_media_uri
self.statement_uri = statement_uri
def imagevenue(url, name, dest, delim, digits, number):
print "Downloading images from [imagevenue]...\n"
links = get_page_links(url, lambda x: "imagevenue.com" in x)
regex_base_url = re.compile(r'.*imagevenue.com', re.IGNORECASE)
regex_ext = re.compile(r'\.[a-zA-Z]*$', re.IGNORECASE)
for link in links:
try:
# source image (i.e. "Open image in a new tab")
img = get_elements(link, "img#thepic")
base_url_match = regex_base_url.search(link)
if base_url_match and img is not []:
# image name and filetype
img_url = img[0]['src']
ext = regex_ext.search(img_url).group(0)
# image URL and output filename
new_name = set_name(name, ext, delim, number, digits)
image_url = "{0}/{1}".format(base_url_match.group(0), img_url)
# download
download_file(image_url, new_name, dest, number)
number += 1
except:
pass
def get_dataverses(self, refresh=False):
collections = get_elements(
self.get_service_document(refresh)[0],
tag='collection',
)
return [Dataverse(self, col) for col in collections]
def imgur(url, name, dest, delim, digits, number):
print "Downloading images from [imgur]...\n"
if not str.endswith(url, "/layout/blog"):
url += "/layout/blog"
links = [div.a.get('href') for div in get_elements(
url, "div.item.view.album-view-image-link")]
regex = re.compile(r'\.com/\w*(\.[a-zA-Z]*)$', re.IGNORECASE)
for link in links:
try:
# image URL and filetype
image_url = "http://" + link[2:]
ext = regex.search(image_url).group(1)
# output filename
new_name = set_name(name, ext, delim, number, digits)
# download
download_file(image_url, new_name, dest, number)
number += 1
except:
pass
def imagevenue(url, name, dest, delim, digits, number):
print "Downloading images from [imagevenue]...\n"
links = get_page_links(url, lambda x: "imagevenue.com" in x)
regex_base_url = re.compile(r'.*imagevenue.com', re.IGNORECASE)
regex_ext = re.compile(r'\.[a-zA-Z]*$', re.IGNORECASE)
for link in links:
try:
# source image (i.e. "Open image in a new tab")
img = get_elements(link, "img#thepic")
base_url_match = regex_base_url.search(link)
if base_url_match and img is not []:
# image name and filetype
img_url = img[0]['src']
ext = regex_ext.search(img_url).group(0)
# image URL and output filename
new_name = set_name(name, ext, delim, number, digits)
image_url = "{0}/{1}".format(base_url_match.group(0), img_url)
# download
download_file(image_url, new_name, dest, number)
number += 1
except:
pass
def get_dataverses(self, refresh=False):
collections = get_elements(
self.get_service_document(refresh)[0],
tag='collection',
)
return [Dataverse(self, col) for col in collections]
def get_datasets(self):
collection_info = requests.get(
self.collection.get('href'),
auth=self.connection.auth,
).content
entries = get_elements(collection_info, tag='entry')
return [Dataset.from_dataverse(entry, self) for entry in entries]
def imagebam(url, name, dest, delim, digits, number):
print "Downloading images from [imagebam]...\n"
# gallery page numbers (ascending)
page_count = [int(el.contents[0])
for el in get_elements(url, "a.pagination_link")]
if page_count:
# multi-page gallery
links = get_imagebam_htmlcode_links(url, page_count[-1])
else:
# single-page gallery
links = get_page_links(url, lambda x: "imagebam.com" in x)
# remove any duplicate links
links = list(unique_everseen(links))
regex = re.compile(r'\.[a-zA-Z]*$', re.IGNORECASE)
for link in links:
try:
# source image (i.e. "Open image in a new tab")
src = [el['src']
for el in get_elements(link, 'img')
if 'id' in el.attrs]
if len(src) > 0:
# image URL
image_url = src[0]
# filetype
ext = regex.search(image_url)
if ext is None:
ext = ".jpg"
else:
ext = ext.group(0)
# output filename
new_name = set_name(name, ext, delim, number, digits)
# download
download_file(image_url, new_name, dest, number)
number += 1
except:
pass
def imagebam(url, name, dest, delim, digits, number):
print "Downloading images from [imagebam]...\n"
# gallery page numbers (ascending)
page_count = [int(el.contents[0])
for el in get_elements(url, "a.pagination_link")]
if page_count:
# multi-page gallery
links = get_imagebam_htmlcode_links(url, page_count[-1])
else:
# single-page gallery
links = get_page_links(url, lambda x: "imagebam.com" in x)
# remove any duplicate links
links = list(unique_everseen(links))
regex = re.compile(r'\.[a-zA-Z]*$', re.IGNORECASE)
for link in links:
try:
# source image (i.e. "Open image in a new tab")
src = [el['src']
for el in get_elements(link, 'img')
if 'id' in el.attrs]
if len(src) > 0:
# image URL
image_url = src[0]
# filetype
ext = regex.search(image_url)
if ext is None:
ext = ".jpg"
else:
ext = ext.group(0)
# output filename
new_name = set_name(name, ext, delim, number, digits)
# download
download_file(image_url, new_name, dest, number)
number += 1
except:
pass
def imgbox(url, name, dest, delim, digits, number):
print "Downloading images from [imgbox]...\n"
links = ['https://imgbox.com/' + el['href']
for el in get_elements(url, '#gallery-view-content a')]
regex = re.compile(r'(\.[a-zA-Z]*)$', re.IGNORECASE)
for link in links:
try:
image_url = [el['src'] for el in get_elements(link, '#img')][0]
ext = regex.search(image_url).group(1)
new_name = set_name(name, ext, delim, number, digits)
download_file(image_url, new_name, dest, number)
number += 1
except:
pass
def get_studies(self):
studiesResponse = self.connection.swordConnection.get_resource(self.collection.href)
# get all the entry nodes and parse them into study objects
studies = []
for element in utils.get_elements(studiesResponse.content, tag="entry"):
s = Study.CreateStudyFromEntryElement(element, hostDataverse=self)
studies.append(s)
return studies
def get_dataverses(self, refresh=False):
if refresh:
self.connect()
collections = get_elements(
self.service_document[0],
tag="collection",
)
return [Dataverse(self, col) for col in collections]
def CreateFromAtomEntry(cls, atomXml, hostStudy):
url = utils.get_elements(atomXml,
tag="id",
numberOfElements=1).text
name = url.rsplit("/")[-1]
editMediaUri = url
contentType = utils.get_elements(atomXml,
tag="content",
numberOfElements=1).get("type")
mimetype = mimetypes.guess_type(contentType)
updatedString = utils.get_elements(atomXml,
tag="updated",
numberOfElements=1).text
updated = datetime.utcfromtimestamp(updatedString)
return cls(name, editMediaUri, mimetype, updated, hostStudy)
def get_statement(self):
if not self.statementUri:
atomXml = self.get_entry()
statementLink = utils.get_elements(atomXml,
tag="link",
attribute="rel",
attributeValue="http://purl.org/net/sword/terms/statement",
numberOfElements=1)
self.statementUri = statementLink.get("href")
studyStatement = self.hostDataverse.connection.swordConnection.get_resource(self.statementUri).content
return studyStatement
def get_released_files(self):
"""
Uses data sharing API to retrieve a list of files from the most
recently released version of the study
"""
metadata_url = 'https://{0}/dvn/api/metadata/{1}'.format(
self.dataverse.connection.host, self.doi
)
xml = requests.get(metadata_url, verify=False).content
elements = get_elements(xml, tag='otherMat')
return [DataverseFile.from_metadata(element, self)
for element in elements]
def CreateStudyFromEntryElement(cls, entryElement, hostDataverse=None):
idElement = utils.get_elements(entryElement,
tag="id",
numberOfElements=1)
titleElement = utils.get_elements(entryElement,
tag="title",
numberOfElements=1)
editMediaLinkElement = utils.get_elements(entryElement,
tag="link",
attribute="rel",
attributeValue="edit-media",
numberOfElements=1)
editMediaLink = editMediaLinkElement.get("href") if editMediaLinkElement is not None else None
return cls(idElement.text,
titleElement.text,
editUri=entryElement.base, # edit iri
editMediaUri=editMediaLink,
hostDataverse=hostDataverse) # edit-media iri
def get_files(self):
atomXml = self.get_entry()
statementLink = utils.get_elements(atomXml,
tag="link",
attribute="rel",
attributeValue="http://purl.org/net/sword/terms/statement",
numberOfElements=1)
studyStatementLink = statementLink.get("href")
atomStatement = self.hostDataverse.connection.swordConnection.get_atom_sword_statement(studyStatementLink)
files = []
for res in atomStatement.resources:
f = DvnFile.CreateFromAtomStatementObject(res, self)
files.append(f)
return files
def imgur(url, name, dest, delim, digits, number):
print "Downloading images from [imgur]...\n"
links = ['https:' + el['src']
for el in get_elements(url, '.post-image-placeholder, .post-image img')]
regex = re.compile(r'\.com/\w*(\.[a-zA-Z]*)$', re.IGNORECASE)
for image_url in links:
try:
# filetype
ext = regex.search(image_url).group(1)
# output filename
new_name = set_name(name, ext, delim, number, digits)
# download
download_file(image_url, new_name, dest, number)
number += 1
except:
pass
def imgbox(url, name, dest, delim, digits, number):
print "Downloading images from [imgbox]...\n"
links = [el['src']
for el in get_elements(url, '#gallery-view-content img')]
regex = re.compile(r'\.com/(\w*)(\.[a-zA-Z]*)$', re.IGNORECASE)
for link in links:
try:
# image name and filetype
match = regex.search(link)
image, ext = match.group(1), match.group(2)
# image URL and output filename
image_url = "http://i.imgbox.com/" + image
new_name = set_name(name, ext, delim, number, digits)
# download
download_file(image_url, new_name, dest, number)
number += 1
except:
pass
def get_state(self):
return utils.get_elements(self.get_statement(), tag="category", attribute="term", attributeValue="latestVersionState", numberOfElements=1).text
def get_citation(self):
return utils.get_elements(self.get_entry(), namespace="http://purl.org/dc/terms/", tag="bibliographicCitation", numberOfElements=1).text
def get_studies(self):
response = self.connection.sword.get_resource(self.collection.href)
entries = utils.get_elements(response.content, tag='entry')
return [Study.from_entry(entry, dataverse=self) for entry in entries]
ax = pylab.subplot(111)
pylab.grid(True)
pylab.plot(P1[0], P1[1], "go", P2[0], P2[1], "ro")
ax.set_title("Total cost: %s" % COST)
for l in LINES:
pylab.plot((l[0][0], l[1][0]), (l[0][1], l[1][1]), "k-")
pylab.show()
a = SC(r_outer=2)
sampls = 30
imgs = get_elements("test.png")
points1, t1 = get_points_from_img("9M.png", simpleto=sampls)
P = a.compute(points1)
x1 = [p[0] for p in points1]
y1 = [400 - p[1] for p in points1]
for i, img in enumerate(imgs):
cv.ShowImage("Preview - %s" % i, img)
cv.WaitKey()
sys.exit()
for img in imgs:
cv.ShowImage("Preview2", img)
cv.WaitKey()
def get_datasets(self, refresh=False):
collection_info = self.get_collection_info(refresh)
entries = get_elements(collection_info, tag='entry')
return [Dataset.from_dataverse(entry, self) for entry in entries]
ax = pylab.subplot(111)
pylab.grid(True)
pylab.plot(P1[0],P1[1],'go',P2[0],P2[1],'ro')
ax.set_title('Total cost: %s' % COST)
for l in LINES:
pylab.plot((l[0][0],l[1][0]),(l[0][1],l[1][1]), 'k-')
pylab.show()
a = SC()
sampls = 100
imgs = get_elements('test.png')
points = get_points_from_img('9M2.png',simpleto=sampls)
P = a.compute(points)
x1 = [p[0] for p in points]
y1 = [400-p[1] for p in points]
for img in imgs:
points2 = get_points_from_img(img,simpleto=sampls)
if points2:
Q = a.compute(points2)
x2 = [p[0] for p in points2]
y2 = [400-p[1] for p in points2]
def CreateStudyFromAtomEntryXmlString(cls, xml):
title = utils.get_elements(xml, tag="title", numberOfElements=1).text
return cls(title, atomEntryXml=xml)
def get_studies(self):
response = self.connection.sword.get_resource(self.collection.href)
entries = utils.get_elements(response.content, tag='entry')
return [Study.from_entry(entry, dataverse=self) for entry in entries]
ax = pylab.subplot(111)
pylab.grid(True)
pylab.plot(P1[0],P1[1],'go',P2[0],P2[1],'ro')
ax.set_title('Total cost: %s' % COST)
for l in LINES:
pylab.plot((l[0][0],l[1][0]),(l[0][1],l[1][1]), 'k-')
pylab.show()
a = SC(r_outer=2)
sampls = 30
imgs = get_elements('test.png')
points1,t1 = get_points_from_img('9M.png',simpleto=sampls)
P = a.compute(points1)
x1 = [p[0] for p in points1]
y1 = [400-p[1] for p in points1]
for i,img in enumerate(imgs):
cv.imshow('Preview - %s' % i,img)
cv.waitKey(0)
sys.exit()
for img in imgs:
cv.imshow('Preview2',img)
cv.waitKey(0)
db = tango.Database()
# Setup
pool = sys.argv[1]
pool_server = "Pool/{}".format(pool)
pool_name = db.get_device_name(pool_server, "Pool")[0]
logging.info("Pool: {}".format(pool))
logging.info("Server: {}".format(pool_server))
logging.info("Pool device: {}".format(pool_name))
ms_server = "MacroServer/{}".format(pool)
ms_name = db.get_device_name(ms_server, "MacroServer")[0]
logging.info("MacroServer: {}".format(ms_server))
logging.info("MacroServer device: {}".format(ms_name))
# Prepare environment
elements = get_elements(pool, db)
ms_elements = get_ms_elements(pool, db)
print("controller/endstationmanipulator/a_ea01_mpb_01_ctrl" in elements)
# Generate mapping
aliases = generate_aliases_mapping(elements, db)
ids = generate_id_mapping(elements, db)
ctrl_ids = generate_prop_mapping(elements, db, "ctrl_id")
motor_ids = generate_prop_mapping(elements, db, "motor_role_ids")
pseudo_ids = generate_prop_mapping(elements, db, "pseudo_motor_role_ids")
channel_ids = generate_prop_mapping(elements, db, "elements")
instrument_list = generate_instrument_list(pool_name, db)
instrument_ids = generate_instrument_mapping(instrument_list)
# Class mapping
classes = generate_class_mapping(elements, db)
classes_ms = generate_class_mapping(ms_elements, db)
def is_released(self):
collectionInfo = self.connection.swordConnection.get_resource(self.collection.href).content
status = utils.get_elements(collectionInfo, namespace="http://purl.org/net/sword/terms/state", tag="dataverseHasBeenReleased", numberOfElements=1).text
return bool(status)