Beispiel #1
0
    def test_genome_chunk(self):
        poss = [5, 7, 8, 10, 11, 12]
        chroms = ['c1'] * len(poss)
        poss = numpy.array(poss)
        chroms = numpy.array(chroms)
        varis = VariationsArrays()
        varis[POS_FIELD] = poss
        varis[CHROM_FIELD] = chroms

        # empty before
        varis.get_genome_chunk('c1', 1, 4)