def __ensure_directory(self, number=0):
hotspot_dir = "%s/hotspots" % self.project_config['output_dir']
bash.make_dir(hotspot_dir)
config_mongo.change_config_field('hotspot_dir', hotspot_dir)
directory = '%s/%s' % (hotspot_dir, number)
bash.make_dir(directory)
return directory
def __init__(self):
self.project_config = config_mongo.get_project_config()
self.logger = Logger.get_logger()
self.output_files_dir = '%s/output_files' % self.project_config['output_dir']
if 'output_files_dir' not in self.project_config or not os.path.isdir(self.project_config['output_files_dir']):
bash.make_dir(self.output_files_dir)
config_mongo.change_config_field('output_files_dir', self.output_files_dir)
else:
self.output_files_dir = self.project_config['output_files_dir']
def __init__(self):
"""
This init method is different in that it will create the annotation_dir config parameter if it doesn't
already exist. This is not necessarily the most elegant way to do this, but it works.
:return:
"""
self.project_config = config_mongo.get_project_config()
self.logger = Logger.get_logger()
# Creates the annotation_dir if needed and loads it into the config file
self.annotations_dir = '%s/annotations' % self.project_config['output_dir']
if 'annotation_dir' not in self.project_config or not\
os.path.isdir(self.project_config['annotation_dir']):
bash.make_dir(self.annotations_dir)
config_mongo.change_config_field('annotation_dir', self.annotations_dir)
else:
self.annotations_dir = self.project_config['annotation_dir']