def test_group_in_filter_packets(self):
items = list(range(10))
packets = list(group_in_filter_packets(items, 4))
res = [{FILTERED_OUT: [], PASSED: (0, 1, 2, 3)},
{FILTERED_OUT: [], PASSED: (4, 5, 6, 7)},
{FILTERED_OUT: [], PASSED: (8, 9)}]
assert res == packets
def filter_vcf(vcf_fhand, filter_):
snps = VCFReader(vcf_fhand, min_calls_for_pop_stats=1).parse_snvs()
packet = list(group_in_filter_packets(snps, 10))[0]
filtered_packet = filter_(packet)
return filtered_packet
