def vmtkimagereader(path):
"""Read an image and store it in a vtkImageData object.
Args:
path: Path to the image file.
Returns:
vtkImageData object.
Note:
Reads several image formats: vti, vtk, dcm, raw, mha, mhd, tif, png
"""
reader = vmtkscripts.vmtkImageReader()
reader.InputFileName = path
reader.Execute()
return reader.Image
def vmtkimagereader(path):
"""Read an image and store it in a vtkImageData object.
Args:
path: Path to the image file.
Returns:
vtkImageData object.
Note:
Reads several image formats: vti, vtk, dcm, raw, mha, mhd, tif, png
"""
reader = vmtkscripts.vmtkImageReader()
reader.InputFileName = path
reader.Execute()
return reader.Image
def read_vtifile(path):
imageReader = vmtkscripts.vmtkImageReader()
imageReader.InputFileName = path
imageReader.Execute()
return imageReader
float_path = os.path.join(image_vols_path, post_name_float)
level_set_path = os.path.join(norm_path, level_set_name)
initial_path = os.path.join(image_vols_path, post_name)
#print(directory_path, image_vols_path, registration_path, norm_path)
#print(initial_path)
if do_processing:
if not os.path.exists(norm_path):
try:
os.mkdir(norm_path)
except:
print("unable to create directory{0}".fomat(norm_path))
pass
image_reader = vmtkscripts.vmtkImageReader()
image_reader.InputFileName = initial_path
image_reader.Execute()
cast_float = vtk.vtkImageCast()
cast_float.SetInputData(image_reader.Output)
cast_float.SetOutputScalarTypeToFloat()
cast_float.Update()
float_image = cast_float.GetOutput()
#cast_float = vmtkscripts.vmtkImageCast()
#cast_float.Image = image_reader.Output
#cast_float.OutputType = 'float'
#cast_float.Execute()
#print(cast_float.Image.GetOrigin(), cast_float.Image.GetSpacing())
def vmtkimagereader(filename):
reader = vmtkscripts.vmtkImageReader()
reader.InputFileName = filename
reader.Execute()
return reader.Image