def legosurface(self, vmin=None, vmax=None, invert=False, cmap='afmhot_r'):
"""
Represent a ``Volume`` as lego blocks (voxels).
By default colors correspond to the volume's scalar.
Returns an ``Mesh``.
:param float vmin: the lower threshold, voxels below this value are not shown.
:param float vmax: the upper threshold, voxels above this value are not shown.
:param str cmap: color mapping of the scalar associated to the voxels.
|legosurface| |legosurface.py|_
"""
dataset = vtk.vtkImplicitDataSet()
dataset.SetDataSet(self._imagedata)
window = vtk.vtkImplicitWindowFunction()
window.SetImplicitFunction(dataset)
srng = list(self._imagedata.GetScalarRange())
if vmin is not None:
srng[0] = vmin
if vmax is not None:
srng[1] = vmax
tol = 0.00001*(srng[1]-srng[0])
srng[0] -= tol
srng[1] += tol
window.SetWindowRange(srng)
extract = vtk.vtkExtractGeometry()
extract.SetInputData(self._imagedata)
extract.SetImplicitFunction(window)
extract.SetExtractInside(invert)
extract.ExtractBoundaryCellsOff()
extract.Update()
gf = vtk.vtkGeometryFilter()
gf.SetInputData(extract.GetOutput())
gf.Update()
a = Mesh(gf.GetOutput()).lw(0.1).flat()
scalars = a.getPointArray()
if scalars is None:
print("Error in legosurface(): no scalars found!")
return a
a.pointColors(scalars, vmin=srng[0], vmax=srng[1], cmap=cmap)
a.mapPointsToCells()
return a
# Example demonstrates how to generate a 3D tetrahedra mesh from a # volume. This example differs from the previous clipVolume.tcl examples # in that it uses the slower ordered triangulator and generates clip scalars. # Quadric definition quadric = vtk.vtkQuadric() quadric.SetCoefficients([.5,1,.2,0,.1,0,0,.2,0,0]) sample = vtk.vtkSampleFunction() sample.SetSampleDimensions(20,20,20) sample.SetImplicitFunction(quadric) sample.ComputeNormalsOff() sample.Update() # Program a bandpass filter to clip a range of data. What we do is transform the # scalars so that values laying betweeen (minRange,maxRange) are >= 0.0; all # others are < 0.0, dataset = vtk.vtkImplicitDataSet() dataset.SetDataSet(sample.GetOutput()) window = vtk.vtkImplicitWindowFunction() window.SetImplicitFunction(dataset) window.SetWindowRange(0.5,1.0) # Generate tetrahedral mesh clip = vtk.vtkClipVolume() clip.SetInputConnection(sample.GetOutputPort()) clip.SetClipFunction(window) clip.SetValue(0.0) clip.GenerateClippedOutputOff() clip.Mixed3DCellGenerationOff() gf = vtk.vtkGeometryFilter() # gf SetInput [clip GetClippedOutput] gf.SetInputConnection(clip.GetOutputPort()) clipMapper = vtk.vtkPolyDataMapper()
VTK_DATA_ROOT = vtkGetDataRoot() # Example demonstrates how to generate a 3D tetrahedra mesh from a volume. This example # differs from clipVolume.tcl in that the mesh is generated within a range of contour values. # # Quadric definition quadric = vtk.vtkQuadric() quadric.SetCoefficients([.5,1,.2,0,.1,0,0,.2,0,0]) sample = vtk.vtkSampleFunction() sample.SetSampleDimensions(20,20,20) sample.SetImplicitFunction(quadric) sample.ComputeNormalsOff() # Program a bandpass filter to clip a range of data. What we do is transform the # scalars so that values laying betweeen (minRange,maxRange) are >= 0.0; all # others are < 0.0, dataset = vtk.vtkImplicitDataSet() dataset.SetDataSet(sample.GetOutput()) window = vtk.vtkImplicitWindowFunction() window.SetImplicitFunction(dataset) window.SetWindowRange(0.5,1.0) # Generate tetrahedral mesh clip = vtk.vtkClipVolume() clip.SetInputConnection(sample.GetOutputPort()) clip.SetClipFunction(window) clip.SetValue(0.0) clip.GenerateClippedOutputOff() clipMapper = vtk.vtkDataSetMapper() clipMapper.SetInputConnection(clip.GetOutputPort()) clipMapper.ScalarVisibilityOff() clipActor = vtk.vtkActor() clipActor.SetMapper(clipMapper)
def __init__(self, parent = None):
super(VTKFrame, self).__init__(parent)
self.vtkWidget = QVTKRenderWindowInteractor(self)
vl = QtGui.QVBoxLayout(self)
vl.addWidget(self.vtkWidget)
vl.setContentsMargins(0, 0, 0, 0)
self.ren = vtk.vtkRenderer()
self.vtkWidget.GetRenderWindow().AddRenderer(self.ren)
self.iren = self.vtkWidget.GetRenderWindow().GetInteractor()
sphere = vtk.vtkSphereSource()
sphere.SetCenter(1, 1, 1)
sphere.SetRadius(1)
sphere.SetThetaResolution(100)
sphere.SetPhiResolution(100)
sphere.Update()
cube = vtk.vtkCubeSource()
cube.SetBounds(-1,1,-1,1,-1,1)
cube.Update()
# Create 3D cells so vtkImplicitDataSet evaluates inside vs outside correctly
tri = vtk.vtkDelaunay3D()
tri.SetInput(cube.GetOutput())
tri.BoundingTriangulationOff()
# vtkImplicitDataSet needs some scalars to interpolate to find inside/outside
elev = vtk.vtkElevationFilter()
elev.SetInputConnection(tri.GetOutputPort())
implicit = vtk.vtkImplicitDataSet()
implicit.SetDataSet(elev.GetOutput())
clipper = vtk.vtkClipPolyData()
clipper.SetClipFunction(implicit)
clipper.SetInputConnection(sphere.GetOutputPort())
clipper.InsideOutOn()
clipper.Update()
# Vis for clipped sphere
mapper = vtk.vtkPolyDataMapper()
mapper.SetInputConnection(clipper.GetOutputPort())
actor = vtk.vtkActor()
actor.SetMapper(mapper)
actor.GetProperty().SetRepresentationToWireframe()
# Vis for cube so can see it in relation to clipped sphere
mapper2 = vtk.vtkDataSetMapper()
mapper2.SetInputConnection(elev.GetOutputPort())
actor2 = vtk.vtkActor()
actor2.SetMapper(mapper2)
#actor2.GetProperty().SetRepresentationToWireframe()
#create renderers and add actors of plane and cube
self.ren.AddActor(actor)
self.ren.AddActor(actor2)
self.ren.SetBackground(0.1, 0.2, 0.4)
self.ren.ResetCamera()
self._initialized = False
sphere.Update() cube = vtk.vtkCubeSource() cube.SetBounds(-1, 1, -1, 1, -1, 1) cube.Update() # Create 3D cells so vtkImplicitDataSet evaluates inside vs outside correctly tri = vtk.vtkDelaunay3D() tri.SetInputConnection(cube.GetOutputPort()) tri.BoundingTriangulationOff() # vtkImplicitDataSet needs some scalars to interpolate to find inside/outside elev = vtk.vtkElevationFilter() elev.SetInputConnection(tri.GetOutputPort()) implicit = vtk.vtkImplicitDataSet() implicit.SetDataSet(elev.GetOutput()) clipper = vtk.vtkClipPolyData() clipper.SetClipFunction(implicit) clipper.SetInputConnection(sphere.GetOutputPort()) clipper.InsideOutOn() clipper.Update() # Vis for clipped sphere mapper = vtk.vtkPolyDataMapper() mapper.SetInputConnection(clipper.GetOutputPort()) actor = vtk.vtkActor() actor.SetMapper(mapper) # Vis for cube so can see it in relation to clipped sphere
sphere.Update() cube = vtk.vtkCubeSource() cube.SetBounds(-1,1,-1,1,-1,1) cube.Update() # Create 3D cells so vtkImplicitDataSet evaluates inside vs outside correctly tri = vtk.vtkDelaunay3D() tri.SetInput(cube.GetOutput()) tri.BoundingTriangulationOff() # vtkImplicitDataSet needs some scalars to interpolate to find inside/outside elev = vtk.vtkElevationFilter() elev.SetInputConnection(tri.GetOutputPort()) implicit = vtk.vtkImplicitDataSet() implicit.SetDataSet(elev.GetOutput()) clipper = vtk.vtkClipPolyData() clipper.SetClipFunction(implicit) clipper.SetInputConnection(sphere.GetOutputPort()) clipper.InsideOutOn() clipper.Update() # Vis for clipped sphere mapper = vtk.vtkPolyDataMapper() mapper.SetInputConnection(clipper.GetOutputPort()) actor = vtk.vtkActor() actor.SetMapper(mapper) # Vis for cube so can see it in relation to clipped sphere