def test_help(self):
with self.assertRaises(SystemExit):
with __main__.App(argv=['--help']) as app:
app.run()
self.assertRegex(context.Exception, 'usage: wc-cli')
with capturer.CaptureOutput(merged=False, relay=False) as captured:
with __main__.App(argv=[]) as app:
app.run()
self.assertRegex(captured.stdout.get_text(), 'usage: wc-cli')
self.assertEqual(captured.stderr.get_text(), '')
def test_version(self):
with __main__.App(argv=['-v']) as app:
with capturer.CaptureOutput(merged=False, relay=False) as captured:
with self.assertRaises(SystemExit):
app.run()
self.assertEqual(captured.stdout.get_text(),
wc_cli.__version__)
self.assertEqual(captured.stderr.get_text(), '')
with __main__.App(argv=['--version']) as app:
with capturer.CaptureOutput(merged=False, relay=False) as captured:
with self.assertRaises(SystemExit):
app.run()
self.assertEqual(captured.stdout.get_text(),
wc_cli.__version__)
self.assertEqual(captured.stderr.get_text(), '')
def test_tool_help(self):
config = {
'tool': {
'wc_kb': {
'label':
'kb',
'description':
'Framework for knowledge bases for whole-cell models',
},
'wc_lang': {
'label': 'lang',
'description':
'Framework for representing whole-cell models',
},
},
'model': {},
}
with capturer.CaptureOutput(merged=False, relay=False) as captured:
with __main__.App(argv=['tool'], config=config) as app:
# run app
app.run()
# test that the CLI produced the correct output
self.assertRegex(captured.stdout.get_text(), 'kb')
self.assertRegex(captured.stdout.get_text(), 'lang')
self.assertEqual(captured.stderr.get_text(), '')
def test_tool_wc_lang(self):
with capturer.CaptureOutput(merged=False, relay=False) as captured:
with __main__.App(argv=['tool', 'lang', '--version']) as app:
# run app
app.run()
self.assertRegex(captured.stdout.get_text(),
r'^\d+\.\d+\.\d+[a-zA-Z0-9]*$')
self.assertEqual(captured.stderr.get_text(), '')
def test_tool_wc_lang(self):
os.remove(self.filename)
with __main__.App(argv=[
'tool', 'lang', 'create-template', self.filename,
'--ignore-repo-metadata'
]) as app:
# run app
app.run()
self.assertTrue(os.path.isfile(self.filename))
def test_model_not_installed(self):
config = {
'tool': {},
'model': {
'not_installed_model': {
'label': 'not_installed_model',
'description': 'A model that is not installed',
},
},
}
with self.assertRaises(SystemExit) as context:
with __main__.App(argv=['model', 'not-installed-model', '--help'],
config=config) as app:
# run app
app.run()
self.assertRegex(context.Exception,
'must be installed to use this command')
def test_model_help(self):
config = {
'tool': {},
'model': {
'mycoplasma_pneumoniae': {
'label': 'mycoplasma_pneumoniae',
'description': 'Whole-cell model of Mycoplasma pneumoniae',
}
},
}
with capturer.CaptureOutput(merged=False, relay=False) as captured:
with __main__.App(argv=['model'], config=config) as app:
# run app
app.run()
# test that the CLI produced the correct output
self.assertRegex(captured.stdout.get_text(),
'mycoplasma-pneumoniae')
self.assertEqual(captured.stderr.get_text(), '')