Beispiel #1
0
def data_package_id(filename=None):
    form = DataPackageIDForm()
    eml_node = load_eml(filename=filename)

    # Process POST
    # if request.method == 'POST' and form.validate_on_submit():
    if request.method == 'POST':
        save = False
        if is_dirty_form(form):
            save = True

        if save:
            data_package_id = form.data_package_id.data
            create_data_package_id(data_package_id, filename)
            set_active_packageid(data_package_id)
            form.md5.data = form_md5(form)

        new_page = PAGE_TITLE
        this_page = PAGE_DATA_PACKAGE_ID
        new_page = handle_hidden_buttons(new_page, this_page)

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    data_package_id = eml_node.attribute_value('packageId')
    form.data_package_id.data = data_package_id if data_package_id else ''
    form.md5.data = form_md5(form)

    set_current_page('data_package_id')
    help = get_helps(['data_package_id'])
    return render_template('data_package_id.html',
                           form=form,
                           help=help,
                           title='Data Package ID')
Beispiel #2
0
def abstract(filename=None):
    form = AbstractForm(filename=filename)

    # Process POST
    if request.method == 'POST':

        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        if form_dict:
            if 'Reset' in form_dict:
                # User has elected to reset to last valid saved state
                return get_abstract(filename, form)

        new_page = PAGE_KEYWORD_SELECT
        this_page = PAGE_ABSTRACT
        new_page = handle_hidden_buttons(new_page, this_page)

        if form.validate_on_submit():
            if is_dirty_form(form):
                abstract = form.abstract.data
                valid, msg = is_valid_xml_fragment(abstract, names.ABSTRACT)
                if valid:
                    create_abstract(filename=filename, abstract=abstract)
                    return redirect(url_for(new_page, filename=filename))
                else:
                    flash(invalid_xml_error_message(msg), 'error')
                    return render_get_abstract_page(form, filename)
            else:
                return redirect(url_for(new_page, filename=filename))

    # Process GET
    return get_abstract(filename, form)
Beispiel #3
0
def publication_info(filename=None):
    form = PublicationInfoForm()

    # Process POST
    # if request.method == 'POST' and form.validate_on_submit():
    if request.method == 'POST':
        if 'Next' in request.form:
            new_page = PAGE_METHOD_STEP_SELECT
        elif BTN_HIDDEN_CHECK in request.form:
            new_page = PAGE_CHECK
        elif BTN_HIDDEN_SAVE in request.form:
            new_page = PAGE_PUBLICATION_INFO
        elif BTN_HIDDEN_DOWNLOAD in request.form:
            new_page = PAGE_DOWNLOAD
        elif BTN_HIDDEN_NEW in request.form:
            new_page = PAGE_CREATE
        elif BTN_HIDDEN_OPEN in request.form:
            new_page = PAGE_OPEN
        elif BTN_HIDDEN_CLOSE in request.form:
            new_page = PAGE_CLOSE
        else:
            new_page = PAGE_PUBLISHER

        save = False
        if is_dirty_form(form):
            save = True

        if save:
            pubplace = form.pubplace.data
            pubdate = form.pubdate.data
            create_pubinfo(pubplace=pubplace,
                           pubdate=pubdate,
                           filename=filename)

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    eml_node = load_eml(filename=filename)
    pubplace_node = eml_node.find_single_node_by_path(
        [names.DATASET, names.PUBPLACE])
    if pubplace_node:
        form.pubplace.data = pubplace_node.content
    pubdate_node = eml_node.find_single_node_by_path(
        [names.DATASET, names.PUBDATE])
    if pubdate_node:
        form.pubdate.data = pubdate_node.content
    form.md5.data = form_md5(form)
    set_current_page('publication_info')
    help = get_helps(['pubplace', 'pubdate'])
    return render_template('publication_info.html',
                           help=help,
                           form=form,
                           title='Publication Info')
Beispiel #4
0
def maintenance(filename=None):
    form = MaintenanceForm(filename=filename)
    eml_node = load_eml(filename=filename)
    if eml_node:
        dataset_node = eml_node.find_child(names.DATASET)
        if not dataset_node:
            dataset_node = Node(names.DATASET, parent=eml_node)
            add_child(eml_node, dataset_node)

    # Process POST
    if request.method == 'POST' and BTN_CANCEL in request.form:
        url = url_for(PAGE_MAINTENANCE, filename=filename)
        return redirect(url)

    if request.method == 'POST' and form.validate_on_submit():
        save = False
        if is_dirty_form(form):
            save = True

        if save:
            maintenace_description = form.description.data
            valid, msg = is_valid_xml_fragment(maintenace_description, names.MAINTENANCE)
            if not valid:
                flash(invalid_xml_error_message(msg, False, names.DESCRIPTION), 'error')
                return render_get_maintenance_page(eml_node, form, filename)

            update_frequency = form.update_frequency.data
            create_maintenance(dataset_node, maintenace_description, update_frequency)
            save_both_formats(filename=filename, eml_node=eml_node)

        form_value = request.form
        form_dict = form_value.to_dict(flat=False)

        new_page = PAGE_MAINTENANCE
        if form_dict:
            for key in form_dict:
                val = form_dict[key][0]  # value is the first list element
                if val == BTN_SAVE_AND_CONTINUE:
                    new_page = PAGE_PUBLISHER
                else:
                    new_page = handle_hidden_buttons(new_page, PAGE_MAINTENANCE)

        return redirect(url_for(new_page, filename=filename))


    # Process GET
    if dataset_node:
        maintenance_node = dataset_node.find_child(names.MAINTENANCE)
        if maintenance_node:
            populate_maintenance_form(form, maintenance_node)

    return render_get_maintenance_page(eml_node, form, filename)
Beispiel #5
0
def title(filename=None):
    form = TitleForm()

    # Process POST
    # if request.method == 'POST' and form.validate_on_submit():
    if request.method == 'POST':
        new_page = PAGE_DATA_TABLE_SELECT
        save = False
        if is_dirty_form(form):
            save = True

        if save:
            create_title(title=form.title.data, filename=filename)
            form.md5.data = form_md5(form)

        if 'Next' in request.form:
            new_page = PAGE_DATA_TABLE_SELECT
        elif BTN_HIDDEN_CHECK in request.form:
            new_page = PAGE_CHECK
        elif BTN_HIDDEN_SAVE in request.form:
            new_page = PAGE_TITLE
        elif BTN_HIDDEN_DOWNLOAD in request.form:
            new_page = PAGE_DOWNLOAD
        elif BTN_HIDDEN_NEW in request.form:
            new_page = PAGE_CREATE
        elif BTN_HIDDEN_OPEN in request.form:
            new_page = PAGE_OPEN
        elif BTN_HIDDEN_CLOSE in request.form:
            new_page = PAGE_CLOSE

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    eml_node = load_eml(filename=filename)
    dataset_node = eml_node.find_child(child_name=names.DATASET)
    title_node = dataset_node.find_child(names.TITLE)
    if title_node:
        form.title.data = title_node.content
    form.md5.data = form_md5(form)

    set_current_page('title')
    help = get_helps(['title', 'nav', 'welcome'])
    first_usage = is_first_usage()
    return render_template('title.html',
                           title='Title',
                           form=form,
                           help=help,
                           is_first_usage=first_usage)
Beispiel #6
0
def intellectual_rights(filename=None):
    form = IntellectualRightsForm(filename=filename)

    # Process POST
    if request.method == 'POST' and form.validate_on_submit():

        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        if form_dict:
            if 'Reset' in form_dict:
                # User has elected to reset to last valid saved state
                return get_intellectual_rights(filename, form)

        submit_type = None
        if is_dirty_form(form):
            submit_type = 'Save Changes'

        if submit_type == 'Save Changes':
            if form.intellectual_rights_radio.data == 'CC0':
                intellectual_rights = INTELLECTUAL_RIGHTS_CC0
            elif form.intellectual_rights_radio.data == 'CCBY':
                intellectual_rights = INTELLECTUAL_RIGHTS_CC_BY
            else:
                intellectual_rights = form.intellectual_rights.data

            valid, msg = is_valid_xml_fragment(intellectual_rights,
                                               names.INTELLECTUALRIGHTS)
            if valid:
                create_intellectual_rights(
                    filename=filename, intellectual_rights=intellectual_rights)
            else:
                flash(invalid_xml_error_message(msg), 'error')
                form.intellectual_rights.data = intellectual_rights
                # We don't have valid XML, so we can't look for literal descendant nodes
                font_family = ''
                return render_get_intellectual_rights_page(
                    form, filename, font_family)

        new_page = PAGE_GEOGRAPHIC_COVERAGE_SELECT
        this_page = PAGE_INTELLECTUAL_RIGHTS
        new_page = handle_hidden_buttons(new_page, this_page)

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    return get_intellectual_rights(filename=filename, form=form)
Beispiel #7
0
def data_package_id(filename=None):
    form = DataPackageIDForm()
    eml_node = load_eml(filename=filename)

    # Process POST
    # if request.method == 'POST' and form.validate_on_submit():
    if request.method == 'POST':
        new_page = PAGE_TITLE
        save = False
        if is_dirty_form(form):
            save = True

        if save:
            data_package_id = form.data_package_id.data
            create_data_package_id(data_package_id, filename)
            set_active_packageid(data_package_id)
            form.md5.data = form_md5(form)

        if 'Next' in request.form:
            new_page = PAGE_CHECK
        elif BTN_HIDDEN_CHECK in request.form:
            new_page = PAGE_CHECK
        elif BTN_HIDDEN_SAVE in request.form:
            new_page = PAGE_DATA_PACKAGE_ID
        elif BTN_HIDDEN_DOWNLOAD in request.form:
            new_page = PAGE_DOWNLOAD
        elif BTN_HIDDEN_NEW in request.form:
            new_page = PAGE_CREATE
        elif BTN_HIDDEN_OPEN in request.form:
            new_page = PAGE_OPEN
        elif BTN_HIDDEN_CLOSE in request.form:
            new_page = PAGE_CLOSE

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    data_package_id = eml_node.attribute_value('packageId')
    form.data_package_id.data = data_package_id if data_package_id else ''
    form.md5.data = form_md5(form)

    set_current_page('data_package_id')
    help = get_helps(['data_package_id'])
    return render_template('data_package_id.html',
                           form=form,
                           help=help,
                           title='Data Package ID')
Beispiel #8
0
def abstract(filename=None):
    form = AbstractForm(filename=filename)

    # Process POST
    if request.method == 'POST':
        if 'Next' in request.form:
            new_page = PAGE_KEYWORD_SELECT
        elif BTN_HIDDEN_CHECK in request.form:
            new_page = PAGE_CHECK
        elif BTN_HIDDEN_SAVE in request.form:
            new_page = PAGE_ABSTRACT
        elif BTN_HIDDEN_DOWNLOAD in request.form:
            new_page = PAGE_DOWNLOAD
        elif BTN_HIDDEN_NEW in request.form:
            new_page = PAGE_CREATE
        elif BTN_HIDDEN_OPEN in request.form:
            new_page = PAGE_OPEN
        elif BTN_HIDDEN_CLOSE in request.form:
            new_page = PAGE_CLOSE
        else:
            submit_type = None
            new_page = PAGE_KEYWORD_SELECT

        if form.validate_on_submit():
            if is_dirty_form(form):
                abstract = add_paragraph_tags(form.abstract.data)
                create_abstract(filename=filename, abstract=abstract)
            return redirect(url_for(new_page, filename=filename))

    # Process GET
    eml_node = load_eml(filename=filename)
    abstract_node = eml_node.find_single_node_by_path(
        [names.DATASET, names.ABSTRACT])
    if abstract_node:
        form.abstract.data = remove_paragraph_tags(abstract_node.content)
    form.md5.data = form_md5(form)
    set_current_page('abstract')
    help = [get_help('abstract'), get_help('nav')]
    return render_template('abstract.html',
                           title='Abstract',
                           filename=filename,
                           form=form,
                           help=help)
Beispiel #9
0
def publication_info(filename=None):
    form = PublicationInfoForm()

    # Process POST
    # if request.method == 'POST' and form.validate_on_submit():
    if request.method == 'POST':

        new_page = PAGE_METHOD_STEP_SELECT
        this_page = PAGE_PUBLICATION_INFO
        new_page = handle_hidden_buttons(new_page, this_page)

        save = False
        if is_dirty_form(form):
            save = True

        if save:
            pubplace = form.pubplace.data
            pubdate = form.pubdate.data
            create_pubinfo(pubplace=pubplace,
                           pubdate=pubdate,
                           filename=filename)

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    eml_node = load_eml(filename=filename)
    pubplace_node = eml_node.find_single_node_by_path(
        [names.DATASET, names.PUBPLACE])
    if pubplace_node:
        form.pubplace.data = pubplace_node.content
    pubdate_node = eml_node.find_single_node_by_path(
        [names.DATASET, names.PUBDATE])
    if pubdate_node:
        form.pubdate.data = pubdate_node.content
    form.md5.data = form_md5(form)
    set_current_page('publication_info')
    help = get_helps(['pubplace', 'pubdate'])
    return render_template('publication_info.html',
                           help=help,
                           form=form,
                           title='Publication Info')
Beispiel #10
0
def title(filename=None):
    log_info(f'Title')

    form = TitleForm()

    # Process POST
    if request.method == 'POST' and form.validate_on_submit():
        save = False
        if is_dirty_form(form):
            save = True

        if save:
            create_title(title=form.title.data, filename=filename)
            form.md5.data = form_md5(form)

        new_page = PAGE_DATA_TABLE_SELECT
        this_page = PAGE_TITLE
        new_page = handle_hidden_buttons(new_page, this_page)

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    eml_node = load_eml(filename=filename)
    dataset_node = eml_node.find_child(child_name=names.DATASET)
    title_node = dataset_node.find_child(names.TITLE)
    if title_node:
        form.title.data = title_node.content
    form.md5.data = form_md5(form)

    set_current_page('title')
    help = get_helps(['title', 'nav', 'welcome'])
    first_usage = is_first_usage()
    return render_template('title.html',
                           title='Title',
                           form=form,
                           help=help,
                           is_first_usage=first_usage)
Beispiel #11
0
def maintenance(filename=None):
    form = MaintenanceForm(filename=filename)
    eml_node = load_eml(filename=filename)
    if eml_node:
        dataset_node = eml_node.find_child(names.DATASET)
        if not dataset_node:
            dataset_node = Node(names.DATASET, parent=eml_node)
            add_child(eml_node, dataset_node)

    # Process POST
    if request.method == 'POST' and form.validate_on_submit():
        save = False
        if is_dirty_form(form):
            save = True
        # flash(f'save: {save}')

        if save:
            description = add_paragraph_tags(form.description.data)
            update_frequency = form.update_frequency.data
            create_maintenance(dataset_node, description, update_frequency)
            save_both_formats(filename=filename, eml_node=eml_node)

        form_value = request.form
        form_dict = form_value.to_dict(flat=False)

        if form_dict:
            for key in form_dict:
                val = form_dict[key][0]  # value is the first list element
                if val == BTN_SAVE_AND_CONTINUE:
                    new_page = PAGE_PUBLISHER
                elif val == BTN_HIDDEN_CHECK:
                    new_page = PAGE_CHECK
                elif val == BTN_HIDDEN_SAVE:
                    new_page = PAGE_PROJECT
                elif val == BTN_HIDDEN_DOWNLOAD:
                    new_page = PAGE_DOWNLOAD
                elif val == BTN_HIDDEN_NEW:
                    new_page = PAGE_CREATE
                elif val == BTN_HIDDEN_OPEN:
                    new_page = PAGE_OPEN
                elif val == BTN_HIDDEN_CLOSE:
                    new_page = PAGE_CLOSE

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    if dataset_node:
        maintenance_node = dataset_node.find_child(names.MAINTENANCE)
        if maintenance_node:
            populate_maintenance_form(form, maintenance_node)

    set_current_page('maintenance')
    help = [
        get_help('maintenance'),
        get_help('maintenance_description'),
        get_help('maintenance_freq')
    ]
    return render_template('maintenance.html',
                           title='Maintenance',
                           filename=filename,
                           form=form,
                           help=help)
Beispiel #12
0
def project(filename=None, node_id=None):
    form = ProjectForm(filename=filename)
    eml_node = load_eml(filename=filename)
    if eml_node:
        dataset_node = eml_node.find_child(names.DATASET)
        if not dataset_node:
            dataset_node = Node(names.DATASET, parent=eml_node)
            add_child(eml_node, dataset_node)

    # Process POST
    if request.method == 'POST' and form.validate_on_submit():
        save = False
        if is_dirty_form(form):
            save = True
        # flash(f'save: {save}')

        if 'Next' in request.form:
            if not node_id:
                new_page = PAGE_OTHER_ENTITY_SELECT
            else:
                new_page = PAGE_RELATED_PROJECT_SELECT
        elif BTN_PROJECT_PERSONNEL in request.form:
            new_page = PAGE_PROJECT_PERSONNEL_SELECT
        elif BTN_FUNDING_AWARDS in request.form:
            new_page = PAGE_FUNDING_AWARD_SELECT
        elif BTN_RELATED_PROJECTS in request.form:
            new_page = PAGE_RELATED_PROJECT_SELECT
        elif BTN_HIDDEN_CHECK in request.form:
            new_page = PAGE_CHECK
        elif BTN_HIDDEN_SAVE in request.form:
            new_page = PAGE_PROJECT
        elif BTN_HIDDEN_DOWNLOAD in request.form:
            new_page = PAGE_DOWNLOAD
        elif BTN_HIDDEN_NEW in request.form:
            new_page = PAGE_CREATE
        elif BTN_HIDDEN_OPEN in request.form:
            new_page = PAGE_OPEN
        elif BTN_HIDDEN_CLOSE in request.form:
            new_page = PAGE_CLOSE

        if save:
            title = form.title.data
            abstract = add_paragraph_tags(form.abstract.data)
            if not node_id:
                create_project(dataset_node, title, abstract)
            else:
                related_project_node = create_related_project(
                    dataset_node, title, abstract, node_id)
                node_id = related_project_node.id
            save_both_formats(filename=filename, eml_node=eml_node)

        if not node_id:
            return redirect(url_for(new_page, filename=filename))
        else:
            return redirect(
                url_for(new_page, filename=filename, node_id=node_id))

    # Process GET
    if node_id == '1':
        form.init_md5()
    elif node_id:
        related_project_node = Node.get_node_instance(node_id)
        populate_project_form(form, related_project_node)
    elif dataset_node:
        project_node = dataset_node.find_child(names.PROJECT)
        populate_project_form(form, project_node)

    set_current_page('project')
    if not node_id:
        help = [get_help('project'), get_help('project_title')]
    else:
        help = [get_help('related_project'), get_help('project_title')]
    if not node_id:
        page_title = 'Project'
    else:
        page_title = 'Related Project'
    return render_template('project.html',
                           title=page_title,
                           filename=filename,
                           form=form,
                           help=help)
Beispiel #13
0
def funding_award(filename=None, node_id=None, project_node_id=None):
    form = AwardForm(filename=filename)

    eml_node = load_eml(filename=filename)
    if not project_node_id:
        project_node = eml_node.find_single_node_by_path(
            [names.DATASET, names.PROJECT])
    else:
        project_node = Node.get_node_instance(project_node_id)
    if request.method == 'POST':
        form_value = request.form
        form_dict = form_value.to_dict(flat=False)

        if request.method == 'POST' and BTN_CANCEL in request.form:
            url = url_for(PAGE_FUNDING_AWARD_SELECT,
                          filename=filename,
                          node_id=project_node_id)
            return redirect(url)

        # if request.method == 'POST' and form.validate_on_submit():
        if request.method == 'POST':
            next_page = PAGE_FUNDING_AWARD_SELECT

        submit_type = None
        if is_dirty_form(form):
            submit_type = 'Save Changes'
        # flash(f'submit_type: {submit_type}')

        if submit_type == 'Save Changes':
            funder_name = form.funder_name.data
            award_title = form.award_title.data
            funder_identifier = form.funder_identifier.data
            award_number = form.award_number.data
            award_url = form.award_url.data

            award_node = Node(names.AWARD, parent=project_node)

            create_funding_award(award_node, funder_name, award_title,
                                 funder_identifier, award_number, award_url)

            if node_id and len(node_id) != 1:
                old_award_node = Node.get_node_instance(node_id)

                if old_award_node:
                    award_parent_node = old_award_node.parent
                    award_parent_node.replace_child(old_award_node, award_node)
                else:
                    msg = f"No funding award node found in the node store with node id {node_id}"
                    raise Exception(msg)
            else:
                add_child(project_node, award_node)

            save_both_formats(filename=filename, eml_node=eml_node)

        url = select_post(filename,
                          form,
                          form_dict,
                          'POST',
                          PAGE_FUNDING_AWARD_SELECT,
                          PAGE_PROJECT,
                          PAGE_FUNDING_AWARD_SELECT,
                          PAGE_FUNDING_AWARD,
                          project_node_id=project_node_id)
        return redirect(url)

    # Process GET
    if not project_node_id:
        title = 'Project Funding Award'
        related_project = False
    else:
        title = 'Related Project Funding Award'
        related_project = True

    if node_id == '1':
        form.init_md5()
    else:
        award_nodes = project_node.find_all_children(names.AWARD)
        if award_nodes:
            for award_node in award_nodes:
                if node_id == award_node.id:
                    populate_award_form(form, award_node)
                    break

    set_current_page('project')
    help = [
        get_help('award'),
        get_help('funder_name'),
        get_help('award_title'),
        get_help('funder_identifiers'),
        get_help('award_number'),
        get_help('award_url')
    ]
    return render_template('award.html',
                           title=title,
                           form=form,
                           help=help,
                           related_project=related_project)
Beispiel #14
0
def method_step(filename=None, node_id=None):
    eml_node = load_eml(filename=filename)
    dataset_node = eml_node.find_child(names.DATASET)

    if dataset_node:
        methods_node = dataset_node.find_child(names.METHODS)
    else:
        dataset_node = Node(names.DATASET, parent=eml_node)
        add_child(eml_node, dataset_node)

    if not methods_node:
        methods_node = Node(names.METHODS, parent=dataset_node)
        add_child(dataset_node, methods_node)

    form = MethodStepForm(filename=filename, node_id=node_id)

    # Process POST
    if request.method == 'POST' and BTN_CANCEL in request.form:
        url = url_for(PAGE_METHOD_STEP_SELECT, filename=filename)
        return redirect(url)

    if request.method == 'POST' and form.validate_on_submit():
        new_page = PAGE_METHOD_STEP_SELECT  # Save or Back sends us back to the list of method steps

        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        if form_dict:
            for key in form_dict:
                val = form_dict[key][0]  # value is the first list element
                if val == BTN_HIDDEN_NEW:
                    new_page = PAGE_CREATE
                    break
                elif val == BTN_HIDDEN_OPEN:
                    new_page = PAGE_OPEN
                    break
                elif val == BTN_HIDDEN_CLOSE:
                    new_page = PAGE_CLOSE
                    break

        submit_type = None
        if is_dirty_form(form):
            submit_type = 'Save Changes'

        if submit_type == 'Save Changes':
            description = add_paragraph_tags(form.description.data)
            instrumentation = form.instrumentation.data
            method_step_node = Node(names.METHODSTEP, parent=methods_node)
            create_method_step(method_step_node, description, instrumentation)

            if node_id and len(node_id) != 1:
                old_method_step_node = Node.get_node_instance(node_id)

                if old_method_step_node:
                    method_step_parent_node = old_method_step_node.parent
                    method_step_parent_node.replace_child(
                        old_method_step_node, method_step_node)
                else:
                    msg = f"No methodStep node found in the node store with node id {node_id}"
                    raise Exception(msg)
            else:
                add_child(methods_node, method_step_node)

            save_both_formats(filename=filename, eml_node=eml_node)

        url = url_for(new_page, filename=filename)
        return redirect(url)

    # Process GET
    if node_id == '1':
        form.init_md5()
    else:
        method_step_nodes = methods_node.find_all_children(names.METHODSTEP)
        if method_step_nodes:
            for ms_node in method_step_nodes:
                if node_id == ms_node.id:
                    populate_method_step_form(form, ms_node)
                    break

    set_current_page('method_step')
    help = [
        get_help('method_step_description'),
        get_help('method_step_instrumentation')
    ]
    return render_template('method_step.html',
                           title='Method Step',
                           form=form,
                           filename=filename,
                           help=help)
Beispiel #15
0
def project(filename=None, project_node_id=None):
    form = ProjectForm(filename=filename)
    eml_node = load_eml(filename=filename)
    if eml_node:
        dataset_node = eml_node.find_child(names.DATASET)
        if not dataset_node:
            dataset_node = Node(names.DATASET, parent=eml_node)
            add_child(eml_node, dataset_node)

    doing_related_project = project_node_id

    # Process POST
    if request.method == 'POST' and form.validate_on_submit():
        save = False
        if is_dirty_form(form):
            save = True

        # if not node_id:
        if not doing_related_project:
            this_page = PAGE_PROJECT
        else:
            this_page = PAGE_RELATED_PROJECT_SELECT  # FIXME?
        new_page = None

        if 'Next' in request.form:
            # if not node_id:
            if not doing_related_project:
                new_page = PAGE_OTHER_ENTITY_SELECT
            else:
                new_page = PAGE_RELATED_PROJECT_SELECT
        elif BTN_PROJECT_PERSONNEL in request.form:
            new_page = PAGE_PROJECT_PERSONNEL_SELECT
        elif BTN_FUNDING_AWARDS in request.form:
            new_page = PAGE_FUNDING_AWARD_SELECT
        elif BTN_RELATED_PROJECTS in request.form:
            new_page = PAGE_RELATED_PROJECT_SELECT
            # doing_related_project = True
        else:
            new_page = handle_hidden_buttons(new_page, this_page)

        if save:
            abstract = form.abstract.data
            valid, msg = is_valid_xml_fragment(abstract, names.ABSTRACT)
            if not valid:
                flash(invalid_xml_error_message(msg, False, names.ABSTRACT),
                      'error')
                return render_get_project_page(eml_node, form, filename,
                                               doing_related_project,
                                               project_node_id)

            funding = form.funding.data
            valid, msg = is_valid_xml_fragment(funding, names.FUNDING)
            if not valid:
                flash(invalid_xml_error_message(msg, False, names.FUNDING),
                      'error')
                return render_get_project_page(eml_node, form, filename,
                                               doing_related_project,
                                               project_node_id)

            title = form.title.data

            if not doing_related_project:
                create_project(dataset_node, title, abstract, funding)
            else:
                related_project_node = create_related_project(
                    dataset_node, title, abstract, funding, project_node_id)
                project_node_id = related_project_node.id
            save_both_formats(filename=filename, eml_node=eml_node)

        # if not node_id:
        if not doing_related_project:
            return redirect(url_for(new_page, filename=filename))
        else:
            # return redirect(url_for(new_page, filename=filename, node_id=None, project_node_id=project_node_id))
            return redirect(
                url_for(new_page,
                        filename=filename,
                        node_id='None',
                        project_node_id=project_node_id))

    # Process GET
    if project_node_id == '1':
        form.init_md5()
    elif doing_related_project:
        related_project_node = Node.get_node_instance(project_node_id)
        populate_project_form(form, related_project_node)
    elif dataset_node:
        project_node = dataset_node.find_child(names.PROJECT)
        populate_project_form(form, project_node)
    return render_get_project_page(eml_node, form, filename,
                                   doing_related_project, project_node_id)
Beispiel #16
0
def responsible_party(filename=None, node_id=None, method=None,
                      node_name=None, back_page=None, title=None,
                      next_page=None, save_and_continue=False, help=None,
                      project_node_id=None):

    if BTN_CANCEL in request.form:
        if not project_node_id:
            url = url_for(back_page, filename=filename)
        else:
            url = url_for(back_page, filename=filename, node_id=project_node_id)
        return redirect(url)

    form = ResponsiblePartyForm(filename=filename)
    eml_node = load_eml(filename=filename)
    dataset_node = eml_node.find_child(names.DATASET)
    if not dataset_node:
        dataset_node = Node(names.DATASET, parent=eml_node)
        add_child(eml_node, dataset_node)
    parent_node = dataset_node
    role = False
    new_page = select_new_page(back_page, next_page)
    # new_page = back_page

    form_value = request.form
    form_dict = form_value.to_dict(flat=False)
    url = select_post(filename, form, form_dict,
                      'POST', PAGE_PUBLISHER,
                      PAGE_MAINTENANCE, PAGE_PUBLICATION_INFO,
                      PAGE_PUBLISHER, project_node_id=project_node_id)

    # If this is an associatedParty or a project personnel element,
    # set role to True so it will appear as a form field.
    if node_name == names.ASSOCIATEDPARTY or node_name == names.PERSONNEL:
        role = True

    # If this is a project personnel party, place it under the
    # project node, not under the dataset node
    if node_name == names.PERSONNEL:
        if not project_node_id:
            project_node = dataset_node.find_child(names.PROJECT)
            if not project_node:
                project_node = Node(names.PROJECT, parent=dataset_node)
                add_child(dataset_node, project_node)
            parent_node = project_node
        else:
            parent_node = Node.get_node_instance(project_node_id)

    # Process POST
    save = False
    if is_dirty_form(form):
        save = True

    if form.validate_on_submit():
        if save:
            salutation = form.salutation.data
            gn = form.gn.data
            mn = form.mn.data
            sn = form.sn.data
            user_id = form.user_id.data
            organization = form.organization.data
            position_name = form.position_name.data
            address_1 = form.address_1.data
            address_2 = form.address_2.data
            city = form.city.data
            state = form.state.data
            postal_code = form.postal_code.data
            country = form.country.data
            phone = form.phone.data
            fax = form.fax.data
            email = form.email.data
            online_url = form.online_url.data
            role = form.role.data

            rp_node = Node(node_name, parent=parent_node)

            create_responsible_party(
                rp_node,
                filename,
                salutation,
                gn,
                mn,
                sn,
                user_id,
                organization,
                position_name,
                address_1,
                address_2,
                city,
                state,
                postal_code,
                country,
                phone,
                fax,
                email,
                online_url,
                role)

            if node_id and len(node_id) != 1:
                old_rp_node = Node.get_node_instance(node_id)
                if old_rp_node:
                    old_rp_parent_node = old_rp_node.parent
                    old_rp_parent_node.replace_child(old_rp_node, rp_node)
                else:
                    msg = f"No node found in the node store with node id {node_id}"
                    raise Exception(msg)
            else:
                add_child(parent_node, rp_node)

            save_both_formats(filename=filename, eml_node=eml_node)
            # flash(f"Changes to the '{node_name}' element have been saved.")

            # There is at most only one publisher element, so we don't have a
            # list of publishers to navigate back to. Stay on this page after
            # saving changes.
            # FIXME
            if node_name == names.PUBLISHER:
                new_page = PAGE_PUBLICATION_INFO

        if node_name != names.PUBLISHER:
            return redirect(url_for(new_page, filename=filename, node_id=project_node_id))
        else:
            return redirect(url)

    # Process GET
    if node_id == '1':
        form.init_md5()
    else:
        if parent_node:
            rp_nodes = parent_node.find_all_children(child_name=node_name)
            if rp_nodes:
                for rp_node in rp_nodes:
                    if node_id == rp_node.id:
                        populate_responsible_party_form(form, rp_node)

    if project_node_id:
        title = 'Related ' + title
    help = get_helps([node_name])
    return render_template('responsible_party.html', title=title, node_name=node_name,
                           form=form, role=role, next_page=next_page, save_and_continue=save_and_continue, help=help)
Beispiel #17
0
def taxonomic_coverage(filename=None, node_id=None, taxon=None):
    form = TaxonomicCoverageForm(filename=filename)

    # Process POST
    if request.method == 'POST' and BTN_CANCEL in request.form:
        url = url_for(PAGE_TAXONOMIC_COVERAGE_SELECT, filename=filename)
        return redirect(url)

    if request.method == 'POST' and form.validate_on_submit():
        save = False
        if is_dirty_form(form):
            save = True
        # flash(f'save: {save}')

        form_value = request.form
        have_links = False

        if 'Fill' in form_value:
            source = form.taxonomic_authority.data
            if source == 'ITIS':
                source_type = TaxonomySourceEnum.ITIS
            elif source == 'NCBI':
                source_type = TaxonomySourceEnum.NCBI
            elif source == "WORMS":
                source_type = TaxonomySourceEnum.WORMS
            try:
                source_name = ''
                for choice in form.taxonomic_authority.choices:
                    if choice[0] == source:
                        source_name = choice[1]
                        break
                hierarchy = fill_taxonomic_coverage(form.taxon_value.data,
                                                    source_type, source_name)
                if hierarchy:
                    # set the taxon rank dropdown appropriately
                    rank = hierarchy[0][0].capitalize()
                    if (rank, rank) in form.taxon_rank.choices:
                        form.taxon_rank.data = rank
                    # see if we should display a Links column
                    for taxon in hierarchy:
                        if taxon[4]:
                            have_links = True
                            break
            except ValueError as e:
                flash(str(e))
                hierarchy = [(form.taxon_rank.data, form.taxon_value.data, '',
                              '')]
            form.hierarchy.data = hierarchy
            form.hidden_taxon_rank.data = form.taxon_rank.data
            form.hidden_taxon_value.data = form.taxon_value.data
            form.hidden_taxonomic_authority.data = form.taxonomic_authority.data
            help = get_helps(['taxonomic_coverage_fill_hierarchy'])

            return render_template(
                'taxonomic_coverage.html',
                title='Taxonomic Coverage',
                form=form,
                hierarchy=hierarchy,
                taxon_rank=form.taxon_rank.data,
                taxon_value=form.taxon_value.data,
                taxonomic_authority=form.taxonomic_authority.data,
                help=help,
                have_links=have_links)

        form_dict = form_value.to_dict(flat=False)
        new_page = PAGE_TAXONOMIC_COVERAGE_SELECT
        if form_dict:
            for key in form_dict:
                val = form_dict[key][0]  # value is the first list element

                if val == BTN_HIDDEN_NEW:
                    new_page = PAGE_CREATE
                    break
                elif val == BTN_HIDDEN_OPEN:
                    new_page = PAGE_OPEN
                    break
                elif val == BTN_HIDDEN_CLOSE:
                    new_page = PAGE_CLOSE
                    break

        if save:
            if not form.taxon_value.data and not form.taxon_rank.data:
                return redirect(url_for(new_page, filename=filename))

            submitted_hierarchy = form_value.get('hierarchy')
            if isinstance(form_value.get('hierarchy'),
                          str) and form_value.get('hierarchy'):
                # convert hierarchy string to list
                submitted_hierarchy = ast.literal_eval(
                    form_value.get('hierarchy'))
                form.hierarchy.data = submitted_hierarchy

            # if we're saving after doing 'Fill Hierarchy', fill in the values we've been passed
            if form_value.get('hidden_taxon_rank'):
                form.taxon_rank.data = form_value.get('hidden_taxon_rank')
                form.taxon_value.data = form_value.get('hidden_taxon_value')
                form.taxonomic_authority.data = form_value.get(
                    'hidden_taxonomic_authority')
            elif not submitted_hierarchy:
                # we don't have a hierarchy, so construct a fake hierarchy to be used by create_taxonomic_coverage()
                form.hierarchy.data = [(form_value.get('taxon_rank'),
                                        form_value.get('taxon_value'), '', '',
                                        '', '')]

            if not form_value.get('taxon_rank'):
                flash('Taxon Rank is required.')
                return redirect(
                    url_for(PAGE_TAXONOMIC_COVERAGE,
                            filename=filename,
                            node_id=node_id,
                            taxon=form.taxon_value.data))

            eml_node = load_eml(filename=filename)

            dataset_node = eml_node.find_child(names.DATASET)
            if not dataset_node:
                dataset_node = Node(names.DATASET)

            coverage_node = dataset_node.find_child(names.COVERAGE)
            if not coverage_node:
                coverage_node = Node(names.COVERAGE, parent=dataset_node)
                add_child(dataset_node, coverage_node)

            txc_node = Node(names.TAXONOMICCOVERAGE, parent=coverage_node)

            create_taxonomic_coverage(txc_node,
                                      form.general_taxonomic_coverage.data,
                                      form.hierarchy.data,
                                      form.taxonomic_authority.data)

            if node_id and len(node_id) != 1:
                old_txc_node = Node.get_node_instance(node_id)
                if old_txc_node:
                    coverage_parent_node = old_txc_node.parent
                    coverage_parent_node.replace_child(old_txc_node, txc_node)
                else:
                    msg = f"No node found in the node store with node id {node_id}"
                    raise Exception(msg)
            else:
                add_child(coverage_node, txc_node)

            save_both_formats(filename=filename, eml_node=eml_node)

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    have_links = False
    if node_id == '1':
        form.init_md5()
        if taxon:
            form.taxon_value.data = taxon
    else:
        eml_node = load_eml(filename=filename)
        dataset_node = eml_node.find_child(names.DATASET)
        if dataset_node:
            coverage_node = dataset_node.find_child(names.COVERAGE)
            if coverage_node:
                txc_nodes = coverage_node.find_all_children(
                    names.TAXONOMICCOVERAGE)
                if txc_nodes:
                    for txc_node in txc_nodes:
                        if node_id == txc_node.id:
                            have_links = populate_taxonomic_coverage_form(
                                form, txc_node)

    help = get_helps(['taxonomic_coverage_fill_hierarchy'])

    set_current_page('taxonomic_coverage')
    return render_template('taxonomic_coverage.html',
                           title='Taxonomic Coverage',
                           form=form,
                           hierarchy=form.hierarchy.data,
                           have_links=have_links,
                           help=help)
Beispiel #18
0
def geographic_coverage(filename=None, node_id=None):
    form = GeographicCoverageForm(filename=filename)

    # Process POST
    if request.method == 'POST' and BTN_CANCEL in request.form:
        url = url_for(PAGE_GEOGRAPHIC_COVERAGE_SELECT, filename=filename)
        return redirect(url)

    if request.method == 'POST' and form.validate_on_submit():
        submit_type = None
        if is_dirty_form(form):
            submit_type = 'Save Changes'

        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        new_page = PAGE_GEOGRAPHIC_COVERAGE_SELECT
        if form_dict:
            for key in form_dict:
                val = form_dict[key][0]  # value is the first list element

                if val == BTN_HIDDEN_NEW:
                    new_page = PAGE_CREATE
                    break
                elif val == BTN_HIDDEN_OPEN:
                    new_page = PAGE_OPEN
                    break
                elif val == BTN_HIDDEN_CLOSE:
                    new_page = PAGE_CLOSE
                    break

        url = url_for(new_page, filename=filename)

        if submit_type == 'Save Changes':
            eml_node = load_eml(filename=filename)

            dataset_node = eml_node.find_child(names.DATASET)
            if not dataset_node:
                dataset_node = Node(names.DATASET)

            coverage_node = dataset_node.find_child(names.COVERAGE)
            if not coverage_node:
                coverage_node = Node(names.COVERAGE, parent=dataset_node)
                add_child(dataset_node, coverage_node)

            geographic_description = form.geographic_description.data
            wbc = form.wbc.data if form.wbc.data is not None else ''
            ebc = form.ebc.data if form.ebc.data is not None else ''
            nbc = form.nbc.data if form.nbc.data is not None else ''
            sbc = form.sbc.data if form.sbc.data is not None else ''

            gc_node = Node(names.GEOGRAPHICCOVERAGE, parent=coverage_node)

            create_geographic_coverage(gc_node, geographic_description, wbc,
                                       ebc, nbc, sbc)

            if node_id and len(node_id) != 1:
                old_gc_node = Node.get_node_instance(node_id)
                if old_gc_node:
                    coverage_parent_node = old_gc_node.parent
                    coverage_parent_node.replace_child(old_gc_node, gc_node)
                else:
                    msg = f"No node found in the node store with node id {node_id}"
                    raise Exception(msg)
            else:
                add_child(coverage_node, gc_node)

            if nbc and sbc and nbc < sbc:
                flash('North should be greater than or equal to South')
                url = (url_for(PAGE_GEOGRAPHIC_COVERAGE,
                               filename=filename,
                               node_id=gc_node.id))

            if ebc and wbc and ebc < wbc:
                flash('East should be greater than or equal to West')
                url = (url_for(PAGE_GEOGRAPHIC_COVERAGE,
                               filename=filename,
                               node_id=gc_node.id))

            save_both_formats(filename=filename, eml_node=eml_node)

        return redirect(url)

    # Process GET
    if node_id == '1':
        form.init_md5()
    else:
        eml_node = load_eml(filename=filename)
        dataset_node = eml_node.find_child(names.DATASET)
        if dataset_node:
            coverage_node = dataset_node.find_child(names.COVERAGE)
            if coverage_node:
                gc_nodes = coverage_node.find_all_children(
                    names.GEOGRAPHICCOVERAGE)
                if gc_nodes:
                    for gc_node in gc_nodes:
                        if node_id == gc_node.id:
                            populate_geographic_coverage_form(form, gc_node)

    set_current_page('geographic_coverage')
    help = [
        get_help('geographic_coverages'),
        get_help('geographic_description'),
        get_help('bounding_coordinates')
    ]
    return render_template('geographic_coverage.html',
                           title='Geographic Coverage',
                           form=form,
                           help=help)
Beispiel #19
0
def intellectual_rights(filename=None):
    form = IntellectualRightsForm(filename=filename)

    # Process POST
    # if request.method == 'POST' and form.validate_on_submit():
    if request.method == 'POST':
        submit_type = None
        if is_dirty_form(form):
            submit_type = 'Save Changes'

        if submit_type == 'Save Changes':
            if form.intellectual_rights_radio.data == 'CC0':
                intellectual_rights = INTELLECTUAL_RIGHTS_CC0
            elif form.intellectual_rights_radio.data == 'CCBY':
                intellectual_rights = INTELLECTUAL_RIGHTS_CC_BY
            else:
                intellectual_rights = form.intellectual_rights.data

            create_intellectual_rights(filename=filename,
                                       intellectual_rights=intellectual_rights)

        if BTN_HIDDEN_CHECK in request.form:
            new_page = PAGE_CHECK
        elif BTN_HIDDEN_SAVE in request.form:
            new_page = PAGE_INTELLECTUAL_RIGHTS
        elif BTN_HIDDEN_DOWNLOAD in request.form:
            new_page = PAGE_DOWNLOAD
        elif BTN_HIDDEN_NEW in request.form:
            new_page = PAGE_CREATE
        elif BTN_HIDDEN_OPEN in request.form:
            new_page = PAGE_OPEN
        elif BTN_HIDDEN_CLOSE in request.form:
            new_page = PAGE_CLOSE
        else:
            new_page = PAGE_GEOGRAPHIC_COVERAGE_SELECT

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    eml_node = load_eml(filename=filename)
    intellectual_rights_node = eml_node.find_single_node_by_path(
        [names.DATASET, names.INTELLECTUALRIGHTS])
    if intellectual_rights_node:
        ir_content = intellectual_rights_node.content
        if ir_content == INTELLECTUAL_RIGHTS_CC0:
            form.intellectual_rights_radio.data = 'CC0'
            form.intellectual_rights.data = ''
        elif ir_content == INTELLECTUAL_RIGHTS_CC_BY:
            form.intellectual_rights_radio.data = 'CCBY'
            form.intellectual_rights.data = ''
        else:
            form.intellectual_rights_radio.data = "Other"
            form.intellectual_rights.data = intellectual_rights_node.content

    form.md5.data = form_md5(form)

    set_current_page('intellectual_rights')
    help = [get_help('intellectual_rights')]
    return render_template('intellectual_rights.html',
                           title='Intellectual Rights',
                           filename=filename,
                           form=form,
                           help=help)
Beispiel #20
0
def temporal_coverage(filename=None, node_id=None):
    form = TemporalCoverageForm(filename=filename)
    tc_node_id = node_id

    # Process POST
    if request.method == 'POST' and BTN_CANCEL in request.form:
        url = url_for(PAGE_TEMPORAL_COVERAGE_SELECT, filename=filename)
        return redirect(url)

    if request.method == 'POST' and form.validate_on_submit():
        save = False
        if is_dirty_form(form):
            save = True

        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        new_page = PAGE_TEMPORAL_COVERAGE_SELECT
        if form_dict:
            for key in form_dict:
                val = form_dict[key][0]  # value is the first list element

                if val == BTN_HIDDEN_NEW:
                    new_page = PAGE_CREATE
                    break
                elif val == BTN_HIDDEN_OPEN:
                    new_page = PAGE_OPEN
                    break
                elif val == BTN_HIDDEN_CLOSE:
                    new_page = PAGE_CLOSE
                    break
        url = url_for(new_page, filename=filename)

        if save:
            eml_node = load_eml(filename=filename)

            dataset_node = eml_node.find_child(names.DATASET)
            if not dataset_node:
                dataset_node = Node(names.DATASET)

            coverage_node = dataset_node.find_child(names.COVERAGE)
            if not coverage_node:
                coverage_node = Node(names.COVERAGE, parent=dataset_node)
                add_child(dataset_node, coverage_node)

            tc_node = Node(names.TEMPORALCOVERAGE, parent=coverage_node)

            begin_date_str = form.begin_date.data
            end_date_str = form.end_date.data
            create_temporal_coverage(tc_node, begin_date_str, end_date_str)

            if node_id and len(node_id) != 1:
                old_tc_node = Node.get_node_instance(node_id)
                if old_tc_node:
                    coverage_parent_node = old_tc_node.parent
                    coverage_parent_node.replace_child(old_tc_node, tc_node)
                else:
                    msg = f"No node found in the node store with node id {node_id}"
                    raise Exception(msg)
            else:
                add_child(coverage_node, tc_node)

            tc_node_id = tc_node.id

            flash_msg = compare_begin_end_dates(begin_date_str, end_date_str)
            if flash_msg:
                flash(flash_msg)
                url = (url_for(PAGE_TEMPORAL_COVERAGE,
                               filename=filename,
                               node_id=tc_node_id))

            save_both_formats(filename=filename, eml_node=eml_node)

        return redirect(url)

    # Process GET
    if node_id == '1':
        form.init_md5()
    else:
        eml_node = load_eml(filename=filename)
        dataset_node = eml_node.find_child(names.DATASET)
        if dataset_node:
            coverage_node = dataset_node.find_child(names.COVERAGE)
            if coverage_node:
                tc_nodes = coverage_node.find_all_children(
                    names.TEMPORALCOVERAGE)
                if tc_nodes:
                    for tc_node in tc_nodes:
                        if node_id == tc_node.id:
                            populate_temporal_coverage_form(form, tc_node)

    set_current_page('temporal_coverage')
    return render_template('temporal_coverage.html',
                           title='Temporal Coverage',
                           form=form)
Beispiel #21
0
def keyword(filename=None, node_id=None):
    eml_node = load_eml(filename=filename)
    dataset_node = eml_node.find_child(names.DATASET)

    if not dataset_node:
        dataset_node = Node(names.DATASET, parent=eml_node)
        add_child(eml_node, dataset_node)

    form = KeywordForm(filename=filename, node_id=node_id)
    form.init_keywords()

    # Process POST
    if request.method == 'POST' and BTN_CANCEL in request.form:
        url = url_for(PAGE_KEYWORD_SELECT, filename=filename)
        return redirect(url)

    # if request.method == 'POST' and form.validate_on_submit():
    if request.method == 'POST':
        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        new_page = PAGE_KEYWORD_SELECT
        if form_dict:
            for key in form_dict:
                val = form_dict[key][0]  # value is the first list element
                new_page = check_val_for_hidden_buttons(
                    val, new_page, new_page)

        submit_type = None
        if is_dirty_form(form):
            submit_type = 'Save Changes'
        # flash(f'submit_type: {submit_type}')

        if submit_type == 'Save Changes':
            keyword = form.keyword.data
            keyword_type = form.keyword_type.data
            keyword_thesaurus = form.keyword_thesaurus.data

            # If so thesaurus was specified, see if the LTER Controlled Vocabulary applies
            if not keyword_thesaurus:
                lter_keywords = get_keywords('LTER')
                if keyword in lter_keywords:
                    keyword_thesaurus = 'LTER Controlled Vocabulary'

            keyword_set_nodes = []
            eml_node.find_all_descendants(names.KEYWORDSET, keyword_set_nodes)

            keyword_set_node = None
            for kws_node in keyword_set_nodes:
                keyword_thesaurus_node = kws_node.find_child(
                    names.KEYWORDTHESAURUS)
                if keyword_thesaurus_node and keyword_thesaurus_node.content == keyword_thesaurus:
                    keyword_set_node = kws_node
                    break
                if not keyword_thesaurus_node and not keyword_thesaurus:
                    keyword_set_node = kws_node
                    break
            if not keyword_set_node:
                keyword_set_node = Node(names.KEYWORDSET, parent=dataset_node)
                add_child(dataset_node, keyword_set_node)
                if keyword_thesaurus:
                    keyword_thesaurus_node = Node(names.KEYWORDTHESAURUS,
                                                  parent=keyword_set_node)
                    keyword_thesaurus_node.content = keyword_thesaurus
                    keyword_set_node.children.append(keyword_thesaurus_node)

            keyword_node = Node(names.KEYWORD, parent=keyword_set_node)
            create_keyword(keyword_node, keyword, keyword_type)

            if node_id and len(node_id) != 1:
                old_keyword_node = Node.get_node_instance(node_id)

                if old_keyword_node:
                    keyword_parent_node = old_keyword_node.parent
                    keyword_parent_node.replace_child(old_keyword_node,
                                                      keyword_node)
                else:
                    msg = f"No keyword node found in the node store with node id {node_id}"
                    raise Exception(msg)
            else:
                add_child(keyword_set_node, keyword_node)

            save_both_formats(filename=filename, eml_node=eml_node)

        url = url_for(new_page, filename=filename)
        return redirect(url)

    # Process GET
    if node_id == '1':
        form.init_md5()
    else:
        keyword_set_nodes = []
        eml_node.find_all_descendants(names.KEYWORDSET, keyword_set_nodes)
        found = False
        for keyword_set_node in keyword_set_nodes:
            keyword_nodes = keyword_set_node.find_all_children(names.KEYWORD)
            keyword_thesaurus_node = keyword_set_node.find_child(
                names.KEYWORDTHESAURUS)
            if keyword_nodes:
                for kw_node in keyword_nodes:
                    if node_id == kw_node.id:
                        populate_keyword_form(form, kw_node,
                                              keyword_thesaurus_node)
                        found = True
                        break
            if found:
                break

    set_current_page('keyword')
    help = [get_help('keywords')]
    return render_template('keyword.html',
                           title='Keyword',
                           form=form,
                           filename=filename,
                           help=help)
Beispiel #22
0
def access(filename=None, node_id=None):
    eml_node = load_eml(filename=filename)

    if eml_node:
        access_node = eml_node.find_child(names.ACCESS)
    else:
        return

    if not access_node:
        access_node = Node(names.ACCESS, parent=eml_node)
        add_child(eml_node, access_node)

    form = AccessForm(filename=filename, node_id=node_id)
    # form = AccessForm()

    # Process POST
    if request.method == 'POST':
        if BTN_CANCEL in request.form:
            url = url_for(PAGE_ACCESS_SELECT, filename=filename)
            return redirect(url)

        next_page = PAGE_ACCESS_SELECT  # Save or Back sends us back to the list of access rules

        if form.validate_on_submit():
            if is_dirty_form(form):
                submit_type = 'Save Changes'
            else:
                submit_type = 'Back'

            if submit_type == 'Save Changes':
                userid = form.userid.data
                permission = form.permission.data
                allow_node = Node(names.ALLOW, parent=access_node)
                create_access_rule(allow_node, userid, permission)

                if node_id and len(node_id) != 1:
                    old_allow_node = Node.get_node_instance(node_id)

                    if old_allow_node:
                        access_parent_node = old_allow_node.parent
                        access_parent_node.replace_child(
                            old_allow_node, allow_node)
                    else:
                        msg = f"No 'allow' node found in the node store with node id {node_id}"
                        raise Exception(msg)
                else:
                    add_child(access_node, allow_node)

                save_both_formats(filename=filename, eml_node=eml_node)

            url = url_for(next_page, filename=filename)
            return redirect(url)

    # Process GET
    if node_id == '1':
        form.init_md5()
    else:
        allow_nodes = access_node.find_all_children(names.ALLOW)
        if allow_nodes:
            for allow_node in allow_nodes:
                if node_id == allow_node.id:
                    populate_access_rule_form(form, allow_node)
                    break

    return render_template('access.html',
                           title='Access Rule',
                           form=form,
                           filename=filename)
Beispiel #23
0
def method_step(filename=None, node_id=None):
    eml_node = load_eml(filename=filename)
    dataset_node = eml_node.find_child(names.DATASET)

    if dataset_node:
        methods_node = dataset_node.find_child(names.METHODS)
    else:
        dataset_node = Node(names.DATASET, parent=eml_node)
        add_child(eml_node, dataset_node)

    if not methods_node:
        methods_node = Node(names.METHODS, parent=dataset_node)
        add_child(dataset_node, methods_node)

    form = MethodStepForm(filename=filename, node_id=node_id)

    # Process POST
    if request.method == 'POST' and BTN_CANCEL in request.form:
        url = url_for(PAGE_METHOD_STEP_SELECT, filename=filename)
        return redirect(url)

    if request.method == 'POST' and form.validate_on_submit():
        new_page = PAGE_METHOD_STEP_SELECT  # Save or Back sends us back to the list of method steps

        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        if form_dict:
            for key in form_dict:
                val = form_dict[key][0]  # value is the first list element
                new_page = check_val_for_hidden_buttons(
                    val, new_page, PAGE_METHOD_STEP)

        submit_type = None
        if is_dirty_form(form):
            submit_type = 'Save Changes'

        if submit_type == 'Save Changes':
            description = form.description.data
            valid, msg = is_valid_xml_fragment(description, names.MAINTENANCE)
            if not valid:
                flash(invalid_xml_error_message(msg, False, names.DESCRIPTION),
                      'error')
                return render_get_method_step_page(eml_node, form, filename)

            instrumentation = form.instrumentation.data
            data_sources = form.data_sources.data
            method_step_node = Node(names.METHODSTEP, parent=methods_node)
            create_method_step(method_step_node, description, instrumentation,
                               data_sources, data_sources_marker_begin,
                               data_sources_marker_end)

            if node_id and len(node_id) != 1:
                old_method_step_node = Node.get_node_instance(node_id)

                if old_method_step_node:
                    method_step_parent_node = old_method_step_node.parent
                    method_step_parent_node.replace_child(
                        old_method_step_node, method_step_node)
                else:
                    msg = f"No methodStep node found in the node store with node id {node_id}"
                    raise Exception(msg)
            else:
                add_child(methods_node, method_step_node)

            save_both_formats(filename=filename, eml_node=eml_node)

        url = url_for(new_page, filename=filename)
        return redirect(url)

    # Process GET
    if node_id == '1':
        form.init_md5()
    else:
        method_step_nodes = methods_node.find_all_children(names.METHODSTEP)
        if method_step_nodes:
            for ms_node in method_step_nodes:
                if node_id == ms_node.id:
                    populate_method_step_form(form, ms_node)
                    break
    return render_get_method_step_page(eml_node, form, filename)