def mapper_from_yaml(yamlfilename):
import yaml
ydict = yaml.load(open(yamlfilename, 'rt'))
ybins = ydict['bins']
from westpa._rc import bins_from_yaml_dict
#return mapper_from_dict(ybins)
return bins_from_yaml_dict(ybins)
def mapper_from_yaml(yamlfilename):
import yaml
ydict = yaml.load(open(yamlfilename, 'rt'))
ybins = ydict['bins']
from westpa._rc import bins_from_yaml_dict
#return mapper_from_dict(ybins)
return bins_from_yaml_dict(ybins)
def load_config_from_west(self, scheme):
try:
config = westpa.rc.config['west']['analysis']
except:
raise ValueError('There is no configuration file specified.')
ystates = config['analysis_schemes'][scheme]['states']
self.states_from_dict(ystates)
try:
self.subsample = config['subsample']
except:
pass
from westpa._rc import bins_from_yaml_dict
self.binning.mapper = bins_from_yaml_dict(
config['analysis_schemes'][scheme]['bins'][0])
import os
path = os.path.join(os.getcwd(), config['directory'], scheme)
try:
os.mkdir(config['directory'])
os.mkdir(path)
except:
pass
self.output_filename = os.path.join(path, 'assign.h5')