def downloadPDBfiles(self, site="ebi", verbose=False):
""" working directory must be well formed for the system the file is being executed"""
ftp = wget.setUp()
for pdbIDentry in self.pdbIDs:
if verbose:
print ("%s "% (pdbIDentry[0],))
if not wget.wgetPDB(self.__composeLocalFileNameExtension(self.workingDirectory, wget.getPDBfileName(pdbIDentry[0])), pdbIDentry[0], ftp, site):
self.notDownloadedPDBS.append(wget.getPDBfileName(pdbIDentry[0]))
if verbose:
print (" not downloaded \n")
else:
self.downloadedPDBS.append(wget.getPDBfileName(pdbIDentry[0]))
if verbose:
print (" downloaded \n")
wget.tearDown(ftp)
def uncompressPDBFiles(self, verbose=False):
for pdbIDentry in self.pdbIDs:
if verbose:
print ("%s "% (pdbIDentry[0],))
if not wget.uncompressPDB(self.__composeLocalFileNameExtension(self.workingDirectory, wget.getPDBfileName(pdbIDentry[0])), \
self.__composeLocalFileName(self.workingDirectory, pdbIDentry[0])):
self.notUncompressedFiles.append(self.__composeLocalFileName(self.workingDirectory, pdbIDentry[0]))
if verbose:
print (" not uncompressed \n")
else:
self.uncompressedFiles.append(self.__composeLocalFileName(self.workingDirectory, pdbIDentry[0]))
if verbose:
print (" uncompressed\n")