def show_plot(self,result):
if result is not None:
if (self.options.show_plots) :
try :
result.plots.show_all_pyplot()
from wxtbx.command_line import loggraph
loggraph.run([result.loggraph_file])
except Exception as e :
print "Can't display plots"
print "You should be able to view them by running this command:"
print " wxtbx.loggraph %s" % result.loggraph_file
raise e
a_values=self.unit_cell_statistics.all_uc_a_values,
b_values=self.unit_cell_statistics.all_uc_b_values,
c_values=self.unit_cell_statistics.all_uc_c_values,
n_slots=n_slots,
title=\
"Unit cell length distribution (all frames with compatible indexing): %s" % self.prefix)
plt.show()
fig = plt.figure(figsize=(9, 12))
self.plot_statistics_histograms(figure=fig, n_slots=n_slots)
plt.show()
def plot_statistics_histograms(self, figure, n_slots=20):
ax3 = figure.add_axes([0.1, 0.7, 0.8, 0.25])
ax3.hist(self.frame_d_min, n_slots, color=[0.0, 0.5, 1.0])
ax3.set_xlabel("Integrated resolution limit")
ax3.set_title("Resolution by frame (%s)" % self.prefix)
if (__name__ == "__main__"):
show_plots = False
if ("--plots" in sys.argv):
sys.argv.remove("--plots")
show_plots = True
result = run(args=sys.argv[1:])
if result is None:
sys.exit(1)
if (show_plots):
result.plots.show_all_pyplot()
from wxtbx.command_line import loggraph
loggraph.run([result.loggraph_file])
if work_params.merging.reverse_lookup is not None:
for key in scaler.reverse_lookup:
if reindexing_ops.get(scaler.reverse_lookup[key], None) is None:
reindexing_ops[scaler.reverse_lookup[key]]=0
reindexing_ops[scaler.reverse_lookup[key]]+=1
from xfel.cxi.cxi_cc import run_cc
for key in reindexing_ops.keys():
run_cc(work_params,reindexing_op=key,output=out)
return result
if (__name__ == "__main__"):
show_plots = False
if ("--plots" in sys.argv) :
sys.argv.remove("--plots")
show_plots = True
result = run(args=sys.argv[1:])
if result is None:
sys.exit(1)
if (show_plots) :
try :
result.plots.show_all_pyplot()
from wxtbx.command_line import loggraph
loggraph.run([result.loggraph_file])
except Exception, e :
print "Can't display plots"
print "You should be able to view them by running this command:"
print " wxtbx.loggraph %s" % result.loggraph_file
raise e
