def __init__(self,
parent,
filename=None,
groupname=None,
last_array_sel=None,
read_ok_cb=None,
edit_groupname=True,
_larch=None):
self.parent = parent
self._larch = _larch
self.path = filename
group = self.initgroup = self.read_column_file(self.path)
self.subframes = {}
self.workgroup = Group(raw=group)
for attr in ('path', 'filename', 'groupname', 'datatype',
'array_labels'):
setattr(self.workgroup, attr, getattr(group, attr, None))
arr_labels = [l.lower() for l in self.initgroup.array_labels]
if self.workgroup.datatype is None:
self.workgroup.datatype = 'raw'
if ('energ' in arr_labels[0] or 'energ' in arr_labels[1]):
self.workgroup.datatype = 'xas'
self.read_ok_cb = read_ok_cb
self.array_sel = {
'xpop': '',
'xarr': None,
'ypop': '',
'yop': '/',
'yarr1': None,
'yarr2': None,
'use_deriv': False
}
if last_array_sel is not None:
self.array_sel.update(last_array_sel)
if self.array_sel['yarr2'] is None and 'i0' in arr_labels:
self.array_sel['yarr2'] = 'i0'
if self.array_sel['yarr1'] is None:
if 'itrans' in arr_labels:
self.array_sel['yarr1'] = 'itrans'
elif 'i1' in arr_labels:
self.array_sel['yarr1'] = 'i1'
message = "Data Columns for %s" % group.filename
wx.Frame.__init__(self,
None,
-1,
'Build Arrays from Data Columns for %s' %
group.filename,
style=FRAMESTYLE)
self.SetFont(Font(10))
panel = wx.Panel(self)
self.SetMinSize((600, 600))
self.colors = GUIColors()
# title row
title = SimpleText(panel,
message,
font=Font(13),
colour=self.colors.title,
style=LCEN)
opts = dict(action=self.onUpdate, size=(120, -1))
yarr_labels = self.yarr_labels = arr_labels + ['1.0', '0.0', '']
xarr_labels = self.xarr_labels = arr_labels + ['_index']
self.xarr = Choice(panel, choices=xarr_labels, **opts)
self.yarr1 = Choice(panel, choices=arr_labels, **opts)
self.yarr2 = Choice(panel, choices=yarr_labels, **opts)
self.yerr_arr = Choice(panel, choices=yarr_labels, **opts)
self.yerr_arr.Disable()
self.datatype = Choice(panel, choices=DATATYPES, **opts)
self.datatype.SetStringSelection(self.workgroup.datatype)
opts['size'] = (50, -1)
self.yop = Choice(panel, choices=ARR_OPS, **opts)
opts['size'] = (120, -1)
self.use_deriv = Check(panel,
label='use derivative',
default=self.array_sel['use_deriv'],
**opts)
self.xpop = Choice(panel, choices=XPRE_OPS, **opts)
self.ypop = Choice(panel, choices=YPRE_OPS, **opts)
opts['action'] = self.onYerrChoice
self.yerr_op = Choice(panel, choices=YERR_OPS, **opts)
self.yerr_op.SetSelection(0)
self.yerr_const = FloatCtrl(panel, value=1, precision=4, size=(90, -1))
ylab = SimpleText(panel, 'Y = ')
xlab = SimpleText(panel, 'X = ')
yerr_lab = SimpleText(panel, 'Yerror = ')
self.xsuf = SimpleText(panel, '')
self.ysuf = SimpleText(panel, '')
self.xpop.SetStringSelection(self.array_sel['xpop'])
self.ypop.SetStringSelection(self.array_sel['ypop'])
self.yop.SetStringSelection(self.array_sel['yop'])
if '(' in self.array_sel['ypop']:
self.ysuf.SetLabel(')')
ixsel, iysel, iy2sel = 0, 1, len(yarr_labels) - 1
if self.array_sel['xarr'] in xarr_labels:
ixsel = xarr_labels.index(self.array_sel['xarr'])
if self.array_sel['yarr1'] in arr_labels:
iysel = arr_labels.index(self.array_sel['yarr1'])
if self.array_sel['yarr2'] in yarr_labels:
iy2sel = yarr_labels.index(self.array_sel['yarr2'])
self.xarr.SetSelection(ixsel)
self.yarr1.SetSelection(iysel)
self.yarr2.SetSelection(iy2sel)
bpanel = wx.Panel(panel)
bsizer = wx.BoxSizer(wx.HORIZONTAL)
_ok = Button(bpanel, 'OK', action=self.onOK)
_cancel = Button(bpanel, 'Cancel', action=self.onCancel)
_edit = Button(bpanel, 'Edit Array Names', action=self.onEditNames)
bsizer.Add(_ok)
bsizer.Add(_cancel)
bsizer.Add(_edit)
_ok.SetDefault()
pack(bpanel, bsizer)
sizer = wx.GridBagSizer(4, 8)
sizer.Add(title, (0, 0), (1, 7), LCEN, 5)
ir = 1
sizer.Add(xlab, (ir, 0), (1, 1), LCEN, 0)
sizer.Add(self.xpop, (ir, 1), (1, 1), CEN, 0)
sizer.Add(self.xarr, (ir, 2), (1, 1), CEN, 0)
sizer.Add(self.xsuf, (ir, 3), (1, 1), CEN, 0)
ir += 1
sizer.Add(ylab, (ir, 0), (1, 1), LCEN, 0)
sizer.Add(self.ypop, (ir, 1), (1, 1), CEN, 0)
sizer.Add(self.yarr1, (ir, 2), (1, 1), CEN, 0)
sizer.Add(self.yop, (ir, 3), (1, 1), CEN, 0)
sizer.Add(self.yarr2, (ir, 4), (1, 1), CEN, 0)
sizer.Add(self.ysuf, (ir, 5), (1, 1), CEN, 0)
sizer.Add(self.use_deriv, (ir, 6), (1, 1), LCEN, 0)
ir += 1
sizer.Add(yerr_lab, (ir, 0), (1, 1), LCEN, 0)
sizer.Add(self.yerr_op, (ir, 1), (1, 1), CEN, 0)
sizer.Add(self.yerr_arr, (ir, 2), (1, 1), CEN, 0)
sizer.Add(SimpleText(panel, 'Value:'), (ir, 3), (1, 1), CEN, 0)
sizer.Add(self.yerr_const, (ir, 4), (1, 2), CEN, 0)
ir += 1
sizer.Add(SimpleText(panel, 'Data Type:'), (ir, 0), (1, 1), LCEN, 0)
sizer.Add(self.datatype, (ir, 1), (1, 2), LCEN, 0)
ir += 1
self.wid_groupname = wx.TextCtrl(panel,
value=group.groupname,
size=(240, -1))
if not edit_groupname:
self.wid_groupname.Disable()
sizer.Add(SimpleText(panel, 'Group Name:'), (ir, 0), (1, 1), LCEN, 0)
sizer.Add(self.wid_groupname, (ir, 1), (1, 2), LCEN, 0)
ir += 1
sizer.Add(bpanel, (ir, 0), (1, 5), LCEN, 3)
pack(panel, sizer)
self.nb = fnb.FlatNotebook(self, -1, agwStyle=FNB_STYLE)
self.nb.SetTabAreaColour(wx.Colour(248, 248, 240))
self.nb.SetActiveTabColour(wx.Colour(254, 254, 195))
self.nb.SetNonActiveTabTextColour(wx.Colour(40, 40, 180))
self.nb.SetActiveTabTextColour(wx.Colour(80, 0, 0))
self.plotpanel = PlotPanel(self, messenger=self.plot_messages)
textpanel = wx.Panel(self)
ftext = wx.TextCtrl(textpanel,
style=wx.TE_MULTILINE | wx.TE_READONLY,
size=(400, 250))
ftext.SetValue(group.text)
ftext.SetFont(Font(10))
textsizer = wx.BoxSizer(wx.VERTICAL)
textsizer.Add(ftext, 1, LCEN | wx.GROW, 1)
pack(textpanel, textsizer)
self.nb.AddPage(textpanel, ' Text of Data File ', True)
self.nb.AddPage(self.plotpanel, ' Plot of Selected Arrays ', True)
mainsizer = wx.BoxSizer(wx.VERTICAL)
mainsizer.Add(panel, 0, wx.GROW | wx.ALL, 2)
mainsizer.Add(self.nb, 1, LCEN | wx.GROW, 2)
pack(self, mainsizer)
self.statusbar = self.CreateStatusBar(2, 0)
self.statusbar.SetStatusWidths([-1, -1])
statusbar_fields = [group.filename, ""]
for i in range(len(statusbar_fields)):
self.statusbar.SetStatusText(statusbar_fields[i], i)
self.Show()
self.Raise()
self.onUpdate(self)
def __init__(self,
parent,
group=None,
last_array_sel=None,
read_ok_cb=None,
edit_groupname=True):
self.parent = parent
self.dgroup = group
if not hasattr(self.dgroup, 'is_xas'):
try:
self.dgroup.is_xas = 'energ' in self.dgroup.array_labels[
0].lower()
except:
self.dgroup.is_xas = False
self.read_ok_cb = read_ok_cb
self.array_sel = {
'xpop': '',
'xarr': None,
'ypop': '',
'yop': '/',
'yarr1': None,
'yarr2': None,
'use_deriv': False
}
if last_array_sel is not None:
self.array_sel.update(last_array_sel)
if self.array_sel['yarr2'] is None and 'i0' in self.dgroup.array_labels:
self.array_sel['yarr2'] = 'i0'
if self.array_sel['yarr1'] is None:
if 'itrans' in self.dgroup.array_labels:
self.array_sel['yarr1'] = 'itrans'
elif 'i1' in self.dgroup.array_labels:
self.array_sel['yarr1'] = 'i1'
message = "Build Arrys from Data Columns for %s" % self.dgroup.filename
wx.Frame.__init__(self,
None,
-1,
'Build Arrays from Data Columns for %s' %
self.dgroup.filename,
style=FRAMESTYLE)
self.SetFont(Font(10))
panel = scrolled.ScrolledPanel(self)
self.SetMinSize((600, 600))
self.colors = GUIColors()
self.plotframe = None
# title row
title = SimpleText(panel,
message,
font=Font(13),
colour=self.colors.title,
style=LCEN)
opts = dict(action=self.onColumnChoice, size=(120, -1))
arr_labels = self.dgroup.array_labels
yarr_labels = arr_labels + ['1.0', '0.0', '']
xarr_labels = arr_labels + ['<index>']
self.xarr = Choice(panel, choices=xarr_labels, **opts)
self.yarr1 = Choice(panel, choices=arr_labels, **opts)
self.yarr2 = Choice(panel, choices=yarr_labels, **opts)
opts['size'] = (90, -1)
self.xpop = Choice(panel, choices=XPRE_OPS, **opts)
self.ypop = Choice(panel, choices=YPRE_OPS, **opts)
opts['size'] = (50, -1)
self.yop = Choice(panel, choices=ARR_OPS, **opts)
ylab = SimpleText(panel, 'Y = ')
xlab = SimpleText(panel, 'X = ')
self.xsuf = SimpleText(panel, '')
self.ysuf = SimpleText(panel, '')
self.xpop.SetStringSelection(self.array_sel['xpop'])
self.ypop.SetStringSelection(self.array_sel['ypop'])
self.yop.SetStringSelection(self.array_sel['yop'])
if '(' in self.array_sel['ypop']:
self.ysuf.SetLabel(')')
ixsel, iysel, iy2sel = 0, 1, len(yarr_labels) - 1
if self.array_sel['xarr'] in xarr_labels:
ixsel = xarr_labels.index(self.array_sel['xarr'])
if self.array_sel['yarr1'] in arr_labels:
iysel = arr_labels.index(self.array_sel['yarr1'])
if self.array_sel['yarr2'] in yarr_labels:
iy2sel = yarr_labels.index(self.array_sel['yarr2'])
self.xarr.SetSelection(ixsel)
self.yarr1.SetSelection(iysel)
self.yarr2.SetSelection(iy2sel)
opts['size'] = (150, -1)
self.use_deriv = Check(panel,
label='use derivative',
default=self.array_sel['use_deriv'],
**opts)
self.is_xas = Check(panel,
label='use as XAS data',
default=self.dgroup.is_xas,
**opts)
bpanel = wx.Panel(panel)
bsizer = wx.BoxSizer(wx.HORIZONTAL)
bsizer.Add(Button(bpanel, 'Preview', action=self.onColumnChoice), 4)
bsizer.Add(Button(bpanel, 'OK', action=self.onOK), 4)
bsizer.Add(Button(bpanel, 'Cancel', action=self.onCancel), 4)
pack(bpanel, bsizer)
sizer = wx.GridBagSizer(4, 8)
sizer.Add(title, (0, 0), (1, 7), LCEN, 5)
ir = 1
sizer.Add(xlab, (ir, 0), (1, 1), CEN, 0)
sizer.Add(self.xpop, (ir, 1), (1, 1), CEN, 0)
sizer.Add(self.xarr, (ir, 2), (1, 1), CEN, 0)
sizer.Add(self.xsuf, (ir, 3), (1, 1), CEN, 0)
ir += 1
sizer.Add(ylab, (ir, 0), (1, 1), CEN, 0)
sizer.Add(self.ypop, (ir, 1), (1, 1), CEN, 0)
sizer.Add(self.yarr1, (ir, 2), (1, 1), CEN, 0)
sizer.Add(self.yop, (ir, 3), (1, 1), CEN, 0)
sizer.Add(self.yarr2, (ir, 4), (1, 1), CEN, 0)
sizer.Add(self.ysuf, (ir, 5), (1, 1), CEN, 0)
ir += 1
sizer.Add(self.use_deriv, (ir, 0), (1, 3), LCEN, 0)
ir += 1
sizer.Add(self.is_xas, (ir, 0), (1, 3), LCEN, 0)
self.wid_groupname = None
if edit_groupname:
wid_grouplab = SimpleText(panel, 'Use Group Name: ')
self.wid_groupname = wx.TextCtrl(panel,
value=self.dgroup._groupname,
size=(100, -1))
ir += 1
sizer.Add(wid_grouplab, (ir, 0), (1, 2), LCEN, 3)
sizer.Add(self.wid_groupname, (ir, 2), (1, 3), LCEN, 3)
ir += 1
sizer.Add(bpanel, (ir, 0), (1, 5), LCEN, 3)
pack(panel, sizer)
ftext = wx.TextCtrl(self,
style=wx.TE_MULTILINE | wx.TE_READONLY,
size=(-1, 150))
try:
m = open(self.dgroup.filename, 'r')
text = m.read()
m.close()
except:
text = "The file '%s'\n was not found" % self.dgroup.filename
ftext.SetValue(text)
ftext.SetFont(Font(9))
mainsizer = wx.BoxSizer(wx.VERTICAL)
mainsizer.Add(panel, 0, wx.GROW | wx.ALL, 2)
mainsizer.Add(ftext, 1, LCEN | wx.GROW, 2)
pack(self, mainsizer)
self.Show()
self.Raise()
def __init__(self,
parent,
filename=None,
read_ok_cb=None,
size=(725, 450),
_larch=None):
self.parent = parent
self.filename = filename
self.larch = _larch
self.read_ok_cb = read_ok_cb
self.colors = GUIColors()
wx.Frame.__init__(self, parent, -1, size=size, style=FRAMESTYLE)
splitter = wx.SplitterWindow(self, style=wx.SP_LIVE_UPDATE)
splitter.SetMinimumPaneSize(200)
leftpanel = wx.Panel(splitter)
ltop = wx.Panel(leftpanel)
sel_none = Button(ltop,
'Select None',
size=(100, 30),
action=self.onSelNone)
sel_all = Button(ltop,
'Select All',
size=(100, 30),
action=self.onSelAll)
sel_imp = Button(ltop,
'Import Selected Groups',
size=(200, 30),
action=self.onOK)
self.grouplist = FileCheckList(leftpanel,
select_action=self.onShowGroup)
self.grouplist.SetBackgroundColour(wx.Colour(255, 255, 255))
tsizer = wx.GridBagSizer(2, 2)
tsizer.Add(sel_all, (0, 0), (1, 1), LCEN, 0)
tsizer.Add(sel_none, (0, 1), (1, 1), LCEN, 0)
tsizer.Add(sel_imp, (1, 0), (1, 2), LCEN, 0)
pack(ltop, tsizer)
sizer = wx.BoxSizer(wx.VERTICAL)
sizer.Add(ltop, 0, LCEN | wx.GROW, 1)
sizer.Add(self.grouplist, 1, LCEN | wx.GROW | wx.ALL, 1)
pack(leftpanel, sizer)
# right hand side
rightpanel = wx.Panel(splitter)
self.SetTitle("Reading Athena Project '%s'" % self.filename)
self.title = SimpleText(rightpanel,
self.filename,
font=Font(13),
colour=self.colors.title,
style=LCEN)
self.plotpanel = PlotPanel(rightpanel, messenger=self.plot_messages)
sizer = wx.BoxSizer(wx.VERTICAL)
sizer.Add(self.title, 0, LCEN, 2)
sizer.Add(self.plotpanel, 0, LCEN, 2)
pack(rightpanel, sizer)
splitter.SplitVertically(leftpanel, rightpanel, 1)
self.statusbar = self.CreateStatusBar(2, 0)
self.statusbar.SetStatusWidths([-3, -1])
statusbar_fields = [self.filename, ""]
for i in range(len(statusbar_fields)):
self.statusbar.SetStatusText(statusbar_fields[i], i)
self.all = read_athena(self.filename,
do_bkg=False,
do_fft=False,
_larch=_larch)
for item in dir(self.all):
self.grouplist.Append(item)
self.Show()
self.Raise()
def build(self):
sizer = wx.GridBagSizer(10, 5)
sizer.SetVGap(2)
sizer.SetHGap(2)
panel = scrolled.ScrolledPanel(self)
self.SetMinSize((600, 450))
self.colors = GUIColors()
# title row
self.wids = wids = {}
title = SimpleText(panel, 'Fit Results', font=Font(12),
colour=self.colors.title, style=LCEN)
wids['data_title'] = SimpleText(panel, '< > ', font=Font(12),
colour=self.colors.title, style=LCEN)
wids['hist_info'] = SimpleText(panel, ' ___ ', font=Font(12),
colour=self.colors.title, style=LCEN)
sizer.Add(title, (0, 0), (1, 2), LCEN)
sizer.Add(wids['data_title'], (0, 2), (1, 2), LCEN)
sizer.Add(wids['hist_info'], (0, 4), (1, 2), LCEN)
irow = 1
wids['model_desc'] = SimpleText(panel, '<Model>', font=Font(12),
size=(550, 75), style=LCEN)
sizer.Add(wids['model_desc'], (irow, 0), (1, 6), LCEN)
irow += 1
sizer.Add(HLine(panel, size=(400, 3)), (irow, 0), (1, 5), LCEN)
irow += 1
title = SimpleText(panel, '[[Fit Statistics]]', font=Font(12),
colour=self.colors.title, style=LCEN)
sizer.Add(title, (irow, 0), (1, 4), LCEN)
for label, attr in (('Fit method', 'method'),
('# Fit Evaluations', 'nfev'),
('# Data Points', 'ndata'),
('# Fit Variables', 'nvarys'),
('# Free Points', 'nfree'),
('Chi-square', 'chisqr'),
('Reduced Chi-square', 'redchi'),
('Akaike Info Criteria', 'aic'),
('Bayesian Info Criteria', 'bic')):
irow += 1
wids[attr] = SimpleText(panel, '?')
sizer.Add(SimpleText(panel, " %s = " % label), (irow, 0), (1, 1), LCEN)
sizer.Add(wids[attr], (irow, 1), (1, 1), LCEN)
irow += 1
sizer.Add(HLine(panel, size=(400, 3)), (irow, 0), (1, 5), LCEN)
irow += 1
title = SimpleText(panel, '[[Variables]]', font=Font(12),
colour=self.colors.title, style=LCEN)
sizer.Add(title, (irow, 0), (1, 1), LCEN)
self.wids['copy_params'] = Button(panel, 'Update Model with Best Fit Values',
size=(250, -1), action=self.onCopyParams)
sizer.Add(self.wids['copy_params'], (irow, 1), (1, 3), LCEN)
dvstyle = dv.DV_SINGLE|dv.DV_VERT_RULES|dv.DV_ROW_LINES
pview = self.wids['params'] = dv.DataViewListCtrl(panel, style=dvstyle)
self.wids['paramsdata'] = []
pview.AppendTextColumn('Parameter', width=150)
pview.AppendTextColumn('Best-Fit Value', width=100)
pview.AppendTextColumn('Standard Error', width=100)
pview.AppendTextColumn('Info ', width=275)
for col in (0, 1, 2, 3):
this = pview.Columns[col]
isort, align = True, wx.ALIGN_LEFT
if col in (1, 2):
isort, align = False, wx.ALIGN_RIGHT
this.Sortable = isort
this.Alignment = this.Renderer.Alignment = align
pview.SetMinSize((650, 200))
pview.Bind(dv.EVT_DATAVIEW_SELECTION_CHANGED, self.onSelectParameter)
irow += 1
sizer.Add(pview, (irow, 0), (1, 5), LCEN)
irow += 1
sizer.Add(HLine(panel, size=(400, 3)), (irow, 0), (1, 5), LCEN)
irow += 1
title = SimpleText(panel, '[[Correlations]]', font=Font(12),
colour=self.colors.title, style=LCEN)
self.wids['all_correl'] = Button(panel, 'Show All',
size=(100, -1), action=self.onAllCorrel)
self.wids['min_correl'] = FloatCtrl(panel, value=MIN_CORREL,
minval=0, size=(60, -1), gformat=True)
ctitle = SimpleText(panel, 'minimum correlation: ')
sizer.Add(title, (irow, 0), (1, 1), LCEN)
sizer.Add(ctitle, (irow, 1), (1, 1), LCEN)
sizer.Add(self.wids['min_correl'], (irow, 2), (1, 1), LCEN)
sizer.Add(self.wids['all_correl'], (irow, 3), (1, 1), LCEN)
irow += 1
cview = self.wids['correl'] = dv.DataViewListCtrl(panel, style=dvstyle)
cview.AppendTextColumn('Parameter 1', width=150)
cview.AppendTextColumn('Parameter 2', width=150)
cview.AppendTextColumn('Correlation', width=100)
for col in (0, 1, 2):
this = cview.Columns[col]
isort, align = True, wx.ALIGN_LEFT
if col == 1:
isort = False
if col == 2:
align = wx.ALIGN_RIGHT
this.Sortable = isort
this.Alignment = this.Renderer.Alignment = align
cview.SetMinSize((450, 200))
irow += 1
sizer.Add(cview, (irow, 0), (1, 5), LCEN)
irow += 1
sizer.Add(HLine(panel, size=(400, 3)), (irow, 0), (1, 5), LCEN)
pack(panel, sizer)
panel.SetupScrolling()
mainsizer = wx.BoxSizer(wx.VERTICAL)
mainsizer.Add(panel, 1, wx.GROW|wx.ALL, 1)
pack(self, mainsizer)
self.Show()
self.Raise()