class FilterVariantsFromSimpleSubset(unittest.TestCase):
def setUp(self):
intervals = [(1e9 + 1000, 1e9 + 2000), (2e9 + 1000, 2e9 + 2000)]
self.genomesubset = GenomeSubsetFilter(intervals)
def test_filter_variants_both_sides(self):
v1 = Variant(1e9 + 1, "A", "T")
v2 = Variant(1e9 + 1000, "A", "T")
v3 = Variant(1e9 + 2001, "A", "T")
v4 = Variant(2e9 + 2000, "A", "T")
v5 = Variant(3e9 + 1, "A", "T")
results = [t[1] for t in self.genomesubset.filter_variant_list([v1, v2, v3, v4, v5])]
self.assertEqual(results, [0, 1, 0, 1, 0])
class FilterVariantsFromSimpleSubset(unittest.TestCase):
def setUp(self):
intervals = [
(1e9+1000, 1e9+2000),
(2e9+1000, 2e9+2000)
]
self.genomesubset = GenomeSubsetFilter(intervals)
def test_filter_variants_both_sides(self):
v1 = Variant(1e9+1, 'A', 'T')
v2 = Variant(1e9+1000, 'A', 'T')
v3 = Variant(1e9+2001, 'A', 'T')
v4 = Variant(2e9+2000, 'A', 'T')
v5 = Variant(3e9+1, 'A', 'T')
results = [t[1] for t in self.genomesubset.filter_variant_list([v1, v2, v3, v4, v5])]
self.assertEqual(results, [0,1,0,1,0])
def setUp(self):
intervals = [(1e9 + 1000, 1e9 + 2000), (2e9 + 1000, 2e9 + 2000)]
self.genomesubset = GenomeSubsetFilter(intervals)
def setUp(self):
intervals = [
(1e9+1000, 1e9+2000),
(2e9+1000, 2e9+2000)
]
self.genomesubset = GenomeSubsetFilter(intervals)
