def __init__(self, bbox, colorbar=None,
loc_signal=None, image_signal=None, props_signal=None,
overlay=None, **traits):
"""
Parameters
----------
bbox : iterable
the {x,y,z} limits of the volume in which to plot an overlay
colorbar : ColorbarPanel object (optional)
a Qt4 widget with a color table mapping the overlay values
loc_signal : QtCore.pyqtSignal (optional)
optional PyQt4 callback signal to emit when peak finding
(call pattern is loc_signal.emit(x,y,z))
image_signal : QtCore.pyqtSignal (optional)
optional PyQt4 callback signal to emit when updating the image
(call pattern is image_signal.emit(self))
props_signal : QtCore.pyqtSignal (optional)
optional PyQt4 callback signal to emit when only updating
image mapping properties
overlay : str, NIPY Image (optional)
some version of the data to be overlaid
"""
OverlayInterface.__init__(self,
loc_signal=loc_signal,
props_signal=props_signal,
image_signal=image_signal,
**traits)
self.bbox = bbox
self.threshold = ThresholdMap()
self.connect_colorbar(colorbar)
if overlay:
self.set_ndimage_data(overlay)
def __init__(self, bbox,
image_signal=None,
loc_signal=None,
props_signal=None,
beam_vox_signal=None,
**traits):
"""
Create a TFBeamManager
Parameters
----------
bbox : iterable
the {x,y,z} limits of the enrounding volume box to which TFBeam
overlays will be mapped.
loc_signal : QtCore.pyqtSignal
optional PyQt4 callback signal to emit when peak finding
(call pattern is loc_signal.emit(x,y,z))
props_signal : QtCore.pyqtSignal
optional PyQt4 callback signal to emit when image colormapping
properties change
image_signal : QtCore.pyqtSignal
optional PyQt4 callback signal to emit when updating the image
(call pattern is image_signal.emit(self))
beam_vox_signal : QtCore.pyqtSignal
optional PyQt4 callback signal to emit when the current TFBeam
voxel list index has changed. (call pattern is beam_vox_signal(vox))
"""
self.bbox = bbox
self.beam = None
# want to start out with larger alpha, unless requested differently
if 'alpha_scale' not in traits:
traits['alpha_scale'] = 2.0
OverlayInterface.__init__(self,
loc_signal=loc_signal,
props_signal=props_signal,
image_signal=image_signal,
**traits)
self.beam_vox_signal = beam_vox_signal
self._max_radius = np.round(maximum_world_distance(bbox))
self.__needs_refresh = False
self.bstats_manager.tfbeam_man = self
self.bstats_manager.on_trait_change(self._lame_coupling,
'thresh_changed')