fileName = sys.argv[3]
# generate RPRD, RS, CT file lists
with open(confFile) as f:
confCont = f.readlines()
whatToGet = [
'common.RPfilePrefix', 'common.RDfilePrefix',
'common.RSfilePrefix', 'common.CTfilePrefix',
'common.DICOMfileEnding'
]
affix = struct()
affix = CTCtools.getConfVars(affix, whatToGet, confCont)
CTCtools.genRPRD(DICOMdir, affix.RPfilePrefix, affix.RDfilePrefix,
affix.DICOMfileEnding, fileName)
CTCtools.genRS(DICOMdir, affix.RSfilePrefix, affix.DICOMfileEnding,
fileName)
CTCtools.genCT(DICOMdir, affix.CTfilePrefix, affix.DICOMfileEnding,
fileName)
RPRDfile = os.path.sep.join([DICOMdir, 'RPRD.txt'])
RSfile = os.path.sep.join([DICOMdir, 'RS.txt'])
CTfile = os.path.sep.join([DICOMdir, 'CT.txt'])
else:
RPRDfile = sys.argv[2]
RSfile = sys.argv[3]
CTfile = sys.argv[4]
fileName = sys.argv[5]
if len(sys.argv) > cnt:
while len(sys.argv) > cnt:
addStructType.append(sys.argv[cnt])
addRampName.append(sys.argv[cnt + 1])
cnt += 2
func_arg[sys.argv[1]](RPRDfile, RSfile, CTfile, fileName,
addStructType, addRampName)
RPRDfile = sys.argv[1]
RSfile = sys.argv[2]
CTfile = sys.argv[3]
fileName = sys.argv[4]
cnt = 5
while len(sys.argv) > cnt:
addStructType.append(sys.argv[cnt])
addRampName.append(sys.argv[cnt + 1])
cnt += 2
else: # if usage B
DICOMdirectory = sys.argv[1]
fileName = sys.argv[2]
#synthesize RPRDfile, RSfile, CTfile from DICOMdirectory
CTCtools.genRPRD(DICOMdirectory, cv.RPfilePrefix, cv.RDfilePrefix, cv.DICOMfileEnding, fileName)
CTCtools.genRS(DICOMdirectory, cv.RSfilePrefix, cv.DICOMfileEnding, fileName)
CTCtools.genCT(DICOMdirectory, cv.CTfilePrefix, cv.DICOMfileEnding, fileName)
RPRDfile = ''.join([DICOMdirectory, 'RPRD.txt'])
RSfile = ''.join([DICOMdirectory, 'RS.txt'])
CTfile = ''.join([DICOMdirectory, 'CT.txt'])
# load density ramp
# densRamp = CTCtools.getStructFromMatFile(cv.densRampName, 'densRamp', 1)
densRamp = CTCtools.grabData(cv.densRampName, 'densRamp', 1, 1)
# Use DICOM to obtain data
# CT
with open(CTfile) as f:
ct = f.readlines()
ct = map(str.strip, ct)
# get x and y coords, just use first file in list as all will have same grid
CTfile = sys.argv[3]
fileName = sys.argv[4]
cnt = 5
while len(sys.argv) > cnt:
addStructType.append(sys.argv[cnt])
addRampName.append(sys.argv[cnt + 1])
cnt += 2
else: # if usage B
DICOMdirectory = sys.argv[1]
fileName = sys.argv[2]
#synthesize RPRDfile, RSfile, CTfile from DICOMdirectory
CTCtools.genRPRD(DICOMdirectory, cv.RPfilePrefix, cv.RDfilePrefix,
cv.DICOMfileEnding, fileName)
CTCtools.genRS(DICOMdirectory, cv.RSfilePrefix, cv.DICOMfileEnding,
fileName)
CTCtools.genCT(DICOMdirectory, cv.CTfilePrefix, cv.DICOMfileEnding,
fileName)
RPRDfile = ''.join([DICOMdirectory, 'RPRD.txt'])
RSfile = ''.join([DICOMdirectory, 'RS.txt'])
CTfile = ''.join([DICOMdirectory, 'CT.txt'])
# load density ramp
# densRamp = CTCtools.getStructFromMatFile(cv.densRampName, 'densRamp', 1)
densRamp = CTCtools.grabData(cv.densRampName, 'densRamp', 1, 1)
# Use DICOM to obtain data
# CT
with open(CTfile) as f:
ct = f.readlines()
ct = map(str.strip, ct)
# get x and y coords, just use first file in list as all will have same grid
if len(sys.argv) == 4:
DICOMdir = sys.argv[2]
fileName = sys.argv[3]
# generate RPRD, RS, CT file lists
with open(confFile) as f:
confCont = f.readlines()
whatToGet = ['common.RPfilePrefix', 'common.RDfilePrefix',
'common.RSfilePrefix', 'common.CTfilePrefix',
'common.DICOMfileEnding']
affix = struct()
affix = CTCtools.getConfVars(affix, whatToGet, confCont)
CTCtools.genRPRD(DICOMdir, affix.RPfilePrefix, affix.RDfilePrefix,
affix.DICOMfileEnding, fileName)
CTCtools.genRS(DICOMdir, affix.RSfilePrefix, affix.DICOMfileEnding,
fileName)
CTCtools.genCT(DICOMdir, affix.CTfilePrefix, affix.DICOMfileEnding,
fileName)
RPRDfile = os.path.sep.join([DICOMdir, 'RPRD.txt'])
RSfile = os.path.sep.join([DICOMdir, 'RS.txt'])
CTfile = os.path.sep.join([DICOMdir, 'CT.txt'])
else:
RPRDfile = sys.argv[2]
RSfile = sys.argv[3]
CTfile = sys.argv[4]
fileName = sys.argv[5]
if len(sys.argv) > cnt:
while len(sys.argv) > cnt:
addStructType.append(sys.argv[cnt])
addRampName.append(sys.argv[cnt + 1])
cnt += 2
func_arg[sys.argv[1]](RPRDfile, RSfile, CTfile, fileName, addStructType,
addRampName)
