def get_form():
"""
@return: the body of a form
"""
# define the default xml string
default_xml_string = DirectRna.get_sample_xml_string()
# define the form objects
return [Form.MultiLine('model', 'mixture model', default_xml_string)]
def get_form():
"""
@return: the body of a form
"""
# define the default xml string
default_xml_string = DirectRna.get_sample_xml_string()
# define the form objects
return [Form.MultiLine('model', 'mixture model', default_xml_string)]
def get_form():
"""
@return: the body of a form
"""
# define the tree
tree_string = '(((Human:0.1, Chimpanzee:0.2):0.8, Gorilla:0.3):0.7, Orangutan:0.4, Gibbon:0.5);'
tree = Newick.parse(tree_string, Newick.NewickTree)
formatted_tree_string = Newick.get_narrow_newick_string(tree, 60)
# define the form objects
form_objects = [
Form.MultiLine('tree', 'newick tree', formatted_tree_string),
Form.MultiLine('model', 'Direct RNA mixture model',
DirectRna.get_sample_xml_string().strip()),
Form.Integer('ncols', 'sample this many columns',
100, low=1, high=10000)]
return form_objects
def get_form():
"""
@return: the body of a form
"""
# define the newick string
tree_string = '(((Human:0.1, Chimpanzee:0.2):0.8, Gorilla:0.3):0.7, Orangutan:0.4, Gibbon:0.5);'
tree = Newick.parse(tree_string, Newick.NewickTree)
formatted_tree_string = Newick.get_narrow_newick_string(tree, 60)
# define the form objects
form_objects = [
Form.MultiLine('tree', 'newick tree', formatted_tree_string),
Form.MultiLine('alignment', 'nucleotide alignment',
g_sample_alignment_string.strip()),
Form.MultiLine('model', 'Direct RNA mixture model',
DirectRna.get_sample_xml_string().strip())]
return form_objects
def get_form():
"""
@return: the body of a form
"""
# define the newick string
tree_string = '(((Human:0.1, Chimpanzee:0.2):0.8, Gorilla:0.3):0.7, Orangutan:0.4, Gibbon:0.5);'
tree = Newick.parse(tree_string, Newick.NewickTree)
formatted_tree_string = Newick.get_narrow_newick_string(tree, 60)
# define the form objects
form_objects = [
Form.MultiLine('tree', 'newick tree', formatted_tree_string),
Form.MultiLine('alignment', 'nucleotide alignment',
g_sample_alignment_string.strip()),
Form.MultiLine('model', 'Direct RNA mixture model',
DirectRna.get_sample_xml_string().strip())
]
return form_objects
def get_form():
"""
@return: the body of a form
"""
# define the tree
tree_string = '(((Human:0.1, Chimpanzee:0.2):0.8, Gorilla:0.3):0.7, Orangutan:0.4, Gibbon:0.5);'
tree = Newick.parse(tree_string, Newick.NewickTree)
formatted_tree_string = Newick.get_narrow_newick_string(tree, 60)
# define the form objects
form_objects = [
Form.MultiLine('tree', 'newick tree', formatted_tree_string),
Form.MultiLine('model', 'Direct RNA mixture model',
DirectRna.get_sample_xml_string().strip()),
Form.Integer('ncols',
'sample this many columns',
100,
low=1,
high=10000)
]
return form_objects
