def get_response_content(fs):
headers, sequences = Phylip.decode(fs.phylip.splitlines())
if fs.name not in headers:
raise ValueError('the name was not found')
new_pairs = [(h, s) for h, s in zip(headers, sequences) if h != fs.name]
new_headers, new_sequences = zip(*new_pairs)
return Phylip.encode(new_headers, new_sequences) + '\n'
def get_response_content(fs):
headers, sequences = Phylip.decode(fs.phylip.splitlines())
if fs.name not in headers:
raise ValueError('the name was not found')
new_pairs = [(h, s) for h, s in zip(headers, sequences) if h != fs.name]
new_headers, new_sequences = zip(*new_pairs)
return Phylip.encode(new_headers, new_sequences) + '\n'
def process(fs, raw_lines):
headers, sequences = Phylip.decode(raw_lines)
binary_rows = Carbone.get_binary_rows(sequences)
if fs.hud:
return hud.encode(headers, binary_rows) + '\n'
elif fs.phy:
binary_seqs = [''.join(str(x) for x in row) for row in binary_rows]
return Phylip.encode(headers, binary_seqs) + '\n'
def get_response_content(fs):
headers, sequences = Phylip.decode(fs.phylip.splitlines())
new_pairs = sorted(zip(headers, sequences))
new_headers, new_sequences = zip(*new_pairs)
return Phylip.encode(new_headers, new_sequences) + '\n'
def get_response_content(fs):
headers, sequences = Phylip.decode(fs.phylip.splitlines())
new_pairs = sorted(zip(headers, sequences))
new_headers, new_sequences = zip(*new_pairs)
return Phylip.encode(new_headers, new_sequences) + '\n'
def get_response_content(fs):
headers, data_rows = hud.decode(fs.table.splitlines())
sequences = [''.join(str(x) for x in row) for row in data_rows]
return Phylip.encode(headers, sequences)
def get_response_content(fs):
headers, data_rows = hud.decode(fs.table.splitlines())
sequences = [''.join(str(x) for x in row) for row in data_rows]
return Phylip.encode(headers, sequences)
